| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tggcccg | 7 | ||
| MIMAT0019879 | hsa-miR-4745-3p | 1 | ....... | 7 | 100 |
| MIMAT0013972 | bhv1-miR-B9 | 2 | ....... | 8 | 100 |
| MIMAT0012409 | dps-miR-2568b-3p | 2 | ....... | 8 | 100 |
| MIMAT0011068 | mtr-miR166d | 8 | ....... | 2 | 100 |
| MIMAT0034738 | eca-miR-9161 | 7 | _...... | 2 | 85 |
| MIMAT0030173 | bdi-miR7723a-3p | 8 | ......_ | 3 | 85 |
| MIMAT0028467 | mdo-miR-7250-3p | 1 | ......_ | 6 | 85 |
| MIMAT0028320 | mml-miR-7184-5p | 8 | ......_ | 3 | 85 |
| MIMAT0028221 | hsa-miR-7155-3p | 1 | ......_ | 6 | 85 |
| MIMAT0027867 | mmu-miR-6982-3p | 1 | ......_ | 6 | 85 |
| MIMAT0027690 | hsa-miR-6895-5p | 8 | ......_ | 3 | 85 |
| MIMAT0027603 | hsa-miR-6851-3p | 1 | ......_ | 6 | 85 |
| MIMAT0027590 | hsa-miR-6845-5p | 8 | ......_ | 3 | 85 |
| MIMAT0027462 | hsa-miR-6781-5p | 6 | _...... | 1 | 85 |
| MIMAT0027424 | hsa-miR-6762-5p | 8 | ......_ | 3 | 85 |
| MIMAT0027398 | hsa-miR-6749-5p | 7 | _...... | 2 | 85 |
| MIMAT0025637 | gga-miR-6566-5p | 3 | _...... | 8 | 85 |
| MIMAT0022075 | aca-miR-5452-5p | 1 | ......_ | 6 | 85 |
| MIMAT0019883 | hsa-miR-4747-3p | 3 | _...... | 8 | 85 |
| MIMAT0019665 | pma-miR-4631 | 8 | _...... | 3 | 85 |
| MIMAT0019641 | pma-miR-4607 | 6 | ......_ | 1 | 85 |
| MIMAT0018556 | ame-miR-3779 | 8 | _...... | 3 | 85 |
| MIMAT0016235 | ppy-miR-1538 | 2 | _...... | 7 | 85 |
| MIMAT0016213 | ppy-miR-1291 | 1 | ......_ | 6 | 85 |
| MIMAT0016093 | ppy-miR-663b | 3 | ......_ | 8 | 85 |
| MIMAT0016016 | ppy-miR-575 | 6 | ......_ | 1 | 85 |
| MIMAT0015061 | hsa-miR-3181 | 8 | _...... | 3 | 85 |
| MIMAT0019203 | hsa-miR-3136-3p | 1 | ......_ | 6 | 85 |
| MIMAT0014950 | mmu-miR-3109-3p | 8 | ......_ | 3 | 85 |
| MIMAT0014904 | mmu-miR-3091-3p | 6 | _...... | 1 | 85 |
| MIMAT0014491 | tgu-miR-2981 | 7 | _...... | 2 | 85 |
| MIMAT0012968 | eca-miR-1291a | 1 | ......_ | 6 | 85 |
| MIMAT0011811 | bta-miR-2284s | 1 | ......_ | 6 | 85 |
| MIMAT0009956 | bta-miR-1291 | 1 | ......_ | 6 | 85 |
| MIMAT0008310 | ptr-miR-663b | 3 | ......_ | 8 | 85 |
| MIMAT0008009 | ptr-miR-1291 | 1 | ......_ | 6 | 85 |
| MIMAT0007767 | osa-miR1847.2 | 1 | ......_ | 6 | 85 |
| MIMAT0007400 | hsa-miR-1538 | 2 | _...... | 7 | 85 |
| MIMAT0005881 | hsa-miR-1291 | 1 | ......_ | 6 | 85 |
| MIMAT0005867 | hsa-miR-663b | 3 | ......_ | 8 | 85 |
| MIMAT0004834 | ppt-miR1221-3p | 1 | ......_ | 6 | 85 |
