| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tggcgacc | 8 | ||
| MIMAT0028424 | mmu-miR-7228-5p | 1 | ........ | 8 | 100 |
| MIMAT0036943 | oha-miR-551b-3p | 1 | _....... | 7 | 87 |
| MIMAT0031635 | bbe-miR-2069-3p | 2 | _....... | 8 | 87 |
| MIMAT0016146 | ppy-miR-1181 | 8 | _....... | 2 | 87 |
| MIMAT0013327 | mtr-miR2613 | 8 | _....... | 2 | 87 |
| MIMAT0009997 | bfl-miR-2069 | 2 | _....... | 8 | 87 |
| MIMAT0009348 | bta-miR-551b | 1 | _....... | 7 | 87 |
| MIMAT0005596 | rno-miR-551b-3p | 1 | _....... | 7 | 87 |
| MIMAT0034637 | eca-miR-9092 | 1 | ......t. | 8 | 87 |
| MIMAT0017209 | mmu-miR-541-3p | 1 | ......a. | 8 | 87 |
| MIMAT0035805 | tae-miR9678-3p | 3 | ......__ | 8 | 75 |
| MIMAT0034395 | cfa-miR-8873b | 2 | __...... | 7 | 75 |
| MIMAT0034320 | cfa-miR-8828 | 1 | _......_ | 6 | 75 |
| MIMAT0034081 | gra-miR8700 | 3 | _......_ | 8 | 75 |
| MIMAT0033759 | pxy-miR-8520-3p | 8 | ......__ | 3 | 75 |
| MIMAT0033252 | ppc-miR-8350-5p | 1 | _......_ | 6 | 75 |
| MIMAT0033049 | ppc-miR-8275-5p | 1 | _......_ | 6 | 75 |
| MIMAT0032878 | ppc-miR-8222-5p | 3 | _......_ | 8 | 75 |
| MIMAT0032664 | ssa-miR-551-3p | 1 | __...... | 6 | 75 |
| MIMAT0031830 | cpa-miR8137 | 7 | ......__ | 2 | 75 |
| MIMAT0031409 | mmu-miR-8105 | 2 | _......_ | 7 | 75 |
| MIMAT0030980 | hsa-miR-8053 | 1 | ......__ | 6 | 75 |
| MIMAT0032179 | pmi-miR-2006-5p | 8 | ......__ | 3 | 75 |
| MIMAT0029542 | ipu-miR-551 | 1 | __...... | 6 | 75 |
| MIMAT0026329 | ccr-miR-551 | 1 | __...... | 6 | 75 |
| MIMAT0027477 | hsa-miR-6788-3p | 7 | ......__ | 2 | 75 |
| MIMAT0025379 | ssc-miR-551a | 1 | __...... | 6 | 75 |
| MIMAT0025159 | mmu-miR-6406 | 2 | __...... | 7 | 75 |
| MIMAT0024289 | ggo-miR-1273c | 1 | _......_ | 6 | 75 |
| MIMAT0024188 | ggo-miR-551b | 1 | __...... | 6 | 75 |
| MIMAT0024186 | ggo-miR-551a | 1 | __...... | 6 | 75 |
| MIMAT0023281 | osa-miR5809 | 8 | _......_ | 3 | 75 |
| MIMAT0023101 | tur-miR-5736a-3p | 8 | ......__ | 3 | 75 |
| MIMAT0021982 | aca-miR-551 | 1 | __...... | 6 | 75 |
| MIMAT0019750 | hsa-miR-4670-5p | 3 | __...... | 8 | 75 |
| MIMAT0019588 | pma-miR-4556 | 3 | __...... | 8 | 75 |
| MIMAT0019558 | pma-miR-551 | 1 | __...... | 6 | 75 |
| MIMAT0018903 | tca-miR-3899-3p | 1 | _......_ | 6 | 75 |
| MIMAT0018812 | tca-miR-3864-5p | 1 | _......_ | 6 | 75 |
| MIMAT0018788 | tca-miR-279d-5p | 1 | ......__ | 6 | 75 |
| MIMAT0018636 | tca-miR-3807-5p | 2 | ......__ | 7 | 75 |
| MIMAT0018127 | pab-miR3695 | 8 | _......_ | 3 | 75 |
| MIMAT0015998 | ppy-miR-551b | 1 | __...... | 6 | 75 |
| MIMAT0015997 | ppy-miR-551a | 1 | __...... | 6 | 75 |
| MIMAT0015440 | bmo-miR-3257-5p | 1 | ......__ | 6 | 75 |
| MIMAT0015017 | hsa-miR-1273c | 1 | _......_ | 6 | 75 |
| MIMAT0014541 | tgu-miR-551-3p | 1 | __...... | 6 | 75 |
| MIMAT0014460 | tgu-miR-2960 | 2 | _......_ | 7 | 75 |
| MIMAT0013850 | bta-miR-2892 | 1 | _......_ | 6 | 75 |
| MIMAT0013094 | eca-miR-551b | 1 | __...... | 6 | 75 |
| MIMAT0012921 | eca-miR-551a | 1 | __...... | 6 | 75 |
| MIMAT0012764 | mdo-miR-551b-3p | 1 | __...... | 6 | 75 |
| MIMAT0012763 | mdo-miR-551a | 1 | __...... | 6 | 75 |
| MIMAT0013694 | bmo-miR-2794 | 3 | _......_ | 8 | 75 |
| MIMAT0009913 | cfa-miR-551b | 1 | __...... | 6 | 75 |
| MIMAT0009912 | cfa-miR-551a | 1 | __...... | 6 | 75 |
| MIMAT0009347 | bta-miR-551a | 1 | __...... | 6 | 75 |
| MIMAT0008232 | ptr-miR-551b | 1 | __...... | 6 | 75 |
| MIMAT0008231 | ptr-miR-551a | 1 | __...... | 6 | 75 |
| MIMAT0007994 | ptr-miR-1273 | 2 | _......_ | 7 | 75 |
| MIMAT0007949 | ptr-miR-1181 | 8 | _......_ | 3 | 75 |
| MIMAT0006420 | mml-miR-551b-3p | 1 | __...... | 6 | 75 |
| MIMAT0006419 | mml-miR-551a | 1 | __...... | 6 | 75 |
| MIMAT0007290 | gga-miR-551-3p | 1 | __...... | 6 | 75 |
| MIMAT0007175 | oan-miR-128-5p | 1 | ......__ | 6 | 75 |
| MIMAT0007130 | oan-miR-551-3p | 1 | __...... | 6 | 75 |
| MIMAT0005926 | hsa-miR-1273a | 2 | _......_ | 7 | 75 |
| MIMAT0005826 | hsa-miR-1181 | 8 | _......_ | 3 | 75 |
| MIMAT0003890 | mmu-miR-551b-3p | 1 | __...... | 6 | 75 |
| MIMAT0003233 | hsa-miR-551b-3p | 1 | __...... | 6 | 75 |
| MIMAT0003214 | hsa-miR-551a | 1 | __...... | 6 | 75 |
| MIMAT0017213 | rno-miR-541-3p | 3 | ......__ | 8 | 75 |
