| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tggctcgg | 8 | ||
| MIMAT0025022 | hsv1-miR-H26 | 1 | ........ | 8 | 100 |
| MIMAT0028658 | mdo-miR-7328-5p | 2 | ......._ | 8 | 87 |
| MIMAT0028268 | mml-miR-7167-5p | 2 | _....... | 8 | 87 |
| MIMAT0025690 | gga-miR-6596-5p | 8 | _....... | 2 | 87 |
| MIMAT0025314 | prv-miR-LLT10b | 7 | _....... | 1 | 87 |
| MIMAT0025313 | prv-miR-LLT10a | 7 | _....... | 1 | 87 |
| MIMAT0023988 | cgr-miR-615-3p | 8 | _....... | 2 | 87 |
| MIMAT0020595 | ssc-miR-615 | 8 | _....... | 2 | 87 |
| MIMAT0017808 | rno-miR-3550 | 7 | _....... | 1 | 87 |
| MIMAT0016057 | ppy-miR-615-3p | 8 | _....... | 2 | 87 |
| MIMAT0015446 | bmo-miR-3262 | 2 | _....... | 8 | 87 |
| MIMAT0012977 | eca-miR-615-3p | 8 | _....... | 2 | 87 |
| MIMAT0009952 | bta-miR-1225-3p | 7 | _....... | 1 | 87 |
| MIMAT0008277 | ptr-miR-615 | 8 | _....... | 2 | 87 |
| MIMAT0006466 | mml-miR-615-3p | 8 | _....... | 2 | 87 |
| MIMAT0007524 | gga-miR-1648-5p | 2 | _....... | 8 | 87 |
| MIMAT0006943 | oan-miR-1351-5p | 7 | _....... | 1 | 87 |
| MIMAT0003783 | mmu-miR-615-3p | 8 | _....... | 2 | 87 |
| MIMAT0003283 | hsa-miR-615-3p | 8 | _....... | 2 | 87 |
| MIMAT0036969 | bta-miR-1842 | 1 | ......t. | 8 | 87 |
| MIMAT0036859 | oha-miR-24-3p | 1 | ......a. | 8 | 87 |
| MIMAT0036091 | chi-miR-24-3p | 1 | ......a. | 8 | 87 |
| MIMAT0032559 | ssa-miR-24b-3p | 1 | ......a. | 8 | 87 |
| MIMAT0032555 | ssa-miR-24a-3p | 1 | ......a. | 8 | 87 |
| MIMAT0029534 | ipu-miR-24b | 1 | ......a. | 8 | 87 |
| MIMAT0029483 | ipu-miR-24 | 1 | ......a. | 8 | 87 |
| MIMAT0028447 | mmu-miR-7239-3p | 1 | ......t. | 8 | 87 |
| MIMAT0026279 | ccr-miR-24 | 1 | ......a. | 8 | 87 |
| MIMAT0025166 | mmu-miR-6413 | 1 | ......a. | 8 | 87 |
| MIMAT0025163 | mmu-miR-6410 | 1 | ......a. | 8 | 87 |
| MIMAT0025136 | mmu-miR-5124b | 1 | ......a. | 8 | 87 |
| MIMAT0025113 | mmu-miR-6369 | 1 | ......a. | 8 | 87 |
| MIMAT0025104 | mmu-miR-6361 | 1 | ......a. | 8 | 87 |
| MIMAT0023867 | cgr-miR-24-3p | 1 | ......a. | 8 | 87 |
| MIMAT0022787 | sha-miR-24 | 1 | ......a. | 8 | 87 |
| MIMAT0022645 | ola-miR-24b-3p | 1 | ......a. | 8 | 87 |
| MIMAT0022585 | ola-miR-24c | 1 | ......a. | 8 | 87 |
| MIMAT0022545 | ola-miR-24a | 1 | ......a. | 8 | 87 |
| MIMAT0021900 | aca-miR-24-3p | 1 | ......a. | 8 | 87 |
| MIMAT0019405 | pma-miR-24 | 1 | ......a. | 8 | 87 |
| MIMAT0015439 | bmo-miR-3256 | 1 | ......t. | 8 | 87 |
| MIMAT0014539 | tgu-miR-24-3p | 1 | ......a. | 8 | 87 |
| MIMAT0013055 | eca-miR-1842 | 1 | ......t. | 8 | 87 |
| MIMAT0012987 | eca-miR-24 | 1 | ......a. | 8 | 87 |
| MIMAT0011146 | xla-miR-24b | 1 | ......a. | 8 | 87 |
| MIMAT0006701 | cfa-miR-1842 | 1 | ......t. | 8 | 87 |
| MIMAT0006614 | cfa-miR-24 | 1 | ......a. | 8 | 87 |
| MIMAT0006583 | vvi-miR845e | 1 | ......t. | 8 | 87 |
| MIMAT0006582 | vvi-miR845d | 1 | ......t. | 8 | 87 |
| MIMAT0006955 | oan-miR-24-3p | 1 | ......a. | 8 | 87 |
| MIMAT0004175 | mdo-miR-24-3p | 1 | ......a. | 8 | 87 |
| MIMAT0003840 | bta-miR-24-3p | 1 | ......a. | 8 | 87 |
| MIMAT0003655 | xtr-miR-24b | 1 | ......a. | 8 | 87 |
| MIMAT0003654 | xtr-miR-24a-3p | 1 | ......a. | 8 | 87 |
| MIMAT0003066 | tni-miR-24 | 1 | ......a. | 8 | 87 |
| MIMAT0003065 | fru-miR-24-3p | 1 | ......a. | 8 | 87 |
| MIMAT0002751 | ptr-miR-24 | 1 | ......a. | 8 | 87 |
| MIMAT0002740 | ggo-miR-24 | 1 | ......a. | 8 | 87 |
| MIMAT0002343 | ppa-miR-24-3p | 1 | ......a. | 8 | 87 |
| MIMAT0002341 | mne-miR-24-3p | 1 | ......a. | 8 | 87 |
| MIMAT0002339 | ppy-miR-24-3p | 1 | ......a. | 8 | 87 |
| MIMAT0002337 | mml-miR-24-3p | 1 | ......a. | 8 | 87 |
| MIMAT0002134 | ssc-miR-24-3p | 1 | ......a. | 8 | 87 |
| MIMAT0001792 | dre-miR-24 | 1 | ......a. | 8 | 87 |
| MIMAT0001188 | gga-miR-24-3p | 1 | ......a. | 8 | 87 |
| MIMAT0000794 | rno-miR-24-3p | 1 | ......a. | 8 | 87 |
| MIMAT0000219 | mmu-miR-24-3p | 1 | ......a. | 8 | 87 |
| MIMAT0000080 | hsa-miR-24-3p | 1 | ......a. | 8 | 87 |
| MIMAT0036525 | tch-miR-423-3p | 2 | __...... | 7 | 75 |
| MIMAT0036221 | chi-miR-423-3p | 2 | __...... | 7 | 75 |
| MIMAT0035726 | rno-miR-149-5p | 3 | ......__ | 8 | 75 |
| MIMAT0035683 | bra-miR408-5p | 8 | ......__ | 3 | 75 |
| MIMAT0035440 | sly-miR9470-3p | 3 | ......__ | 8 | 75 |
| MIMAT0035296 | gsa-miR-277a-5p | 6 | ......__ | 1 | 75 |
| MIMAT0035195 | efu-miR-9368 | 7 | __...... | 2 | 75 |
| MIMAT0035137 | efu-miR-1842 | 2 | ......__ | 7 | 75 |
| MIMAT0035021 | efu-miR-149 | 3 | ......__ | 8 | 75 |
| MIMAT0034764 | eca-miR-9183 | 3 | _......_ | 8 | 75 |
| MIMAT0034741 | eca-miR-9164 | 3 | ......__ | 8 | 75 |
| MIMAT0034384 | cfa-miR-8882 | 7 | __...... | 2 | 75 |
| MIMAT0033875 | atr-miR8588 | 6 | __...... | 1 | 75 |
| MIMAT0032843 | cel-miR-8211-3p | 3 | _......_ | 8 | 75 |
| MIMAT0032813 | cel-miR-8200-5p | 1 | ......__ | 6 | 75 |
| MIMAT0031691 | bbe-miR-4867-3p | 8 | _......_ | 3 | 75 |
| MIMAT0031467 | ppe-miR171d-3p | 6 | _......_ | 1 | 75 |
| MIMAT0031465 | ppe-miR169l | 6 | ......__ | 1 | 75 |
| MIMAT0031464 | ppe-miR169k | 6 | ......__ | 1 | 75 |
| MIMAT0031458 | ppe-miR169d | 7 | ......__ | 2 | 75 |
| MIMAT0031397 | mmu-miR-1291 | 2 | ......__ | 7 | 75 |
| MIMAT0030984 | hsa-miR-8057 | 2 | ......__ | 7 | 75 |
| MIMAT0030188 | bdi-miR7728-5p | 2 | __...... | 7 | 75 |
| MIMAT0029963 | mtr-miR169i | 7 | ......__ | 2 | 75 |
| MIMAT0029899 | mmu-miR-7686-3p | 3 | __...... | 8 | 75 |
| MIMAT0029840 | mmu-miR-7667-5p | 6 | ......__ | 1 | 75 |
| MIMAT0029831 | mmu-miR-7662-3p | 8 | ......__ | 3 | 75 |
| MIMAT0029579 | rno-miR-7578 | 3 | ......__ | 8 | 75 |
| MIMAT0029578 | mmu-miR-7578 | 3 | ......__ | 8 | 75 |
| MIMAT0029222 | mes-miR169n | 6 | ......__ | 1 | 75 |
| MIMAT0029219 | mes-miR169k | 6 | ......__ | 1 | 75 |
| MIMAT0029218 | mes-miR169j | 6 | ......__ | 1 | 75 |
| MIMAT0029217 | mes-miR169i | 6 | ......__ | 1 | 75 |
| MIMAT0029216 | mes-miR169h | 7 | ......__ | 2 | 75 |
| MIMAT0029097 | gga-miR-7471-3p | 7 | __...... | 2 | 75 |
| MIMAT0028985 | oan-miR-7418-3p | 6 | __...... | 1 | 75 |
| MIMAT0028709 | mdo-miR-7348-3p | 3 | ......__ | 8 | 75 |
| MIMAT0028620 | mdo-miR-7311-5p | 6 | ......__ | 1 | 75 |
| MIMAT0028566 | mdo-miR-7291-5p | 3 | ......__ | 8 | 75 |
| MIMAT0028562 | mdo-miR-7290-5p | 3 | ......__ | 8 | 75 |
| MIMAT0028309 | mml-miR-7181-3p | 8 | ......__ | 3 | 75 |
| MIMAT0026187 | cme-miR169t | 7 | ......__ | 2 | 75 |
| MIMAT0026175 | cme-miR169r | 6 | ......__ | 1 | 75 |
| MIMAT0026079 | cme-miR169k | 7 | ......__ | 2 | 75 |
| MIMAT0026075 | cme-miR169p | 7 | ......__ | 2 | 75 |
| MIMAT0026074 | cme-miR169s | 7 | ......__ | 2 | 75 |
| MIMAT0026073 | cme-miR169q | 7 | ......__ | 2 | 75 |
| MIMAT0028007 | mmu-miR-7051-3p | 7 | ......__ | 2 | 75 |
| MIMAT0027963 | mmu-miR-7029-3p | 3 | ......__ | 8 | 75 |
| MIMAT0027772 | mmu-miR-6936-5p | 8 | ......__ | 3 | 75 |
| MIMAT0027514 | hsa-miR-6807-5p | 8 | ......__ | 3 | 75 |
| MIMAT0025866 | blv-miR-B5-3p | 8 | _......_ | 3 | 75 |
| MIMAT0025498 | han-miR160a | 2 | __...... | 7 | 75 |
| MIMAT0031172 | ppe-miR169e-5p | 7 | ......__ | 2 | 75 |
| MIMAT0027199 | lus-miR169i | 7 | ......__ | 2 | 75 |
| MIMAT0027139 | lus-miR169e | 7 | ......__ | 2 | 75 |
| MIMAT0024570 | bta-miR-149-5p | 3 | ......__ | 8 | 75 |
| MIMAT0024345 | mml-miR-2114 | 6 | _......_ | 1 | 75 |
| MIMAT0024144 | ggo-miR-149 | 3 | ......__ | 8 | 75 |
| MIMAT0024072 | ptr-miR-2114 | 6 | _......_ | 1 | 75 |
| MIMAT0023979 | cgr-miR-505-5p | 8 | ......__ | 3 | 75 |
| MIMAT0023957 | cgr-miR-423-3p | 2 | __...... | 7 | 75 |
| MIMAT0023780 | cgr-miR-149-5p | 3 | ......__ | 8 | 75 |
| MIMAT0023234 | gma-miR171s | 6 | _......_ | 1 | 75 |
| MIMAT0023229 | gma-miR171r | 6 | _......_ | 1 | 75 |
| MIMAT0023217 | gma-miR169r | 7 | ......__ | 2 | 75 |
| MIMAT0023211 | gma-miR169p | 7 | ......__ | 2 | 75 |
| MIMAT0023206 | gma-miR169o | 7 | ......__ | 2 | 75 |
| MIMAT0023132 | mtr-miR171g | 6 | _......_ | 1 | 75 |
| MIMAT0023034 | tur-miR-276-5p | 2 | __...... | 7 | 75 |
| MIMAT0022249 | sbi-miR5387b | 3 | ......__ | 8 | 75 |
| MIMAT0022117 | osa-miR5484 | 8 | __...... | 3 | 75 |
| MIMAT0021269 | mtr-miR171h | 6 | _......_ | 1 | 75 |
| MIMAT0021111 | osa-miR5158 | 7 | ......__ | 2 | 75 |
| MIMAT0021052 | gma-miR5032 | 7 | ......__ | 2 | 75 |
| MIMAT0020140 | cel-miR-4934 | 8 | __...... | 3 | 75 |
| MIMAT0020103 | bfl-miR-4867 | 8 | _......_ | 3 | 75 |
| MIMAT0020403 | tcc-miR169m | 7 | ......__ | 2 | 75 |
| MIMAT0019758 | hsa-miR-4676-5p | 6 | ......__ | 1 | 75 |
| MIMAT0019643 | pma-miR-4609 | 3 | __...... | 8 | 75 |
| MIMAT0019614 | pma-miR-4581 | 1 | __...... | 6 | 75 |
| MIMAT0018455 | csi-miR171b | 6 | _......_ | 1 | 75 |
| MIMAT0018379 | ssc-miR-149 | 3 | ......__ | 8 | 75 |
| MIMAT0018330 | gma-miR169d | 7 | ......__ | 2 | 75 |
| MIMAT0018191 | hsa-miR-3917 | 1 | __...... | 6 | 75 |
| MIMAT0018864 | tca-miR-980-5p | 2 | _......_ | 7 | 75 |
| MIMAT0016081 | ppy-miR-647 | 2 | ......__ | 7 | 75 |
| MIMAT0015883 | ppy-miR-423-3p | 2 | __...... | 7 | 75 |
| MIMAT0015773 | ppy-miR-149 | 3 | ......__ | 8 | 75 |
| MIMAT0017741 | ath-miR841b-5p | 8 | _......_ | 3 | 75 |
| MIMAT0017497 | aly-miR169g-5p | 7 | ......__ | 2 | 75 |
| MIMAT0017495 | aly-miR169f-5p | 7 | ......__ | 2 | 75 |
| MIMAT0017493 | aly-miR169e-5p | 7 | ......__ | 2 | 75 |
| MIMAT0017491 | aly-miR169d-5p | 7 | ......__ | 2 | 75 |
| MIMAT0014171 | rco-miR169c | 7 | ......__ | 2 | 75 |
| MIMAT0014074 | csi-miR169 | 6 | ......__ | 1 | 75 |
| MIMAT0013881 | ssc-miR-423-3p | 2 | __...... | 7 | 75 |
| MIMAT0013040 | eca-miR-423-3p | 2 | __...... | 7 | 75 |
| MIMAT0012973 | eca-miR-149 | 3 | ......__ | 8 | 75 |
| MIMAT0013648 | bmo-miR-375-5p | 8 | __...... | 3 | 75 |
| MIMAT0013583 | cte-miR-2714 | 8 | _......_ | 3 | 75 |
| MIMAT0013321 | mtr-miR169j | 7 | ......__ | 2 | 75 |
| MIMAT0013248 | mtr-miR169k | 7 | ......__ | 2 | 75 |
| MIMAT0012053 | bta-miR-2465 | 7 | ......__ | 2 | 75 |
| MIMAT0011919 | bta-miR-2373-3p | 6 | _......_ | 1 | 75 |
| MIMAT0011568 | crm-miR-72-3p | 2 | __...... | 7 | 75 |
| MIMAT0011157 | hsa-miR-2114-3p | 6 | _......_ | 1 | 75 |
| MIMAT0009908 | cfa-miR-505 | 8 | ......__ | 3 | 75 |
| MIMAT0009884 | cfa-miR-149 | 3 | ......__ | 8 | 75 |
| MIMAT0008249 | ptr-miR-575 | 6 | ......__ | 1 | 75 |
| MIMAT0008142 | ptr-miR-423 | 2 | __...... | 7 | 75 |
| MIMAT0008043 | ptr-miR-149 | 3 | ......__ | 8 | 75 |
| MIMAT0007824 | osa-miR1871 | 2 | ......__ | 7 | 75 |
| MIMAT0006551 | vvi-miR169q | 6 | ......__ | 1 | 75 |
| MIMAT0006550 | vvi-miR169o | 6 | ......__ | 1 | 75 |
| MIMAT0006549 | vvi-miR169n | 6 | ......__ | 1 | 75 |
| MIMAT0006548 | vvi-miR169l | 6 | ......__ | 1 | 75 |
| MIMAT0006547 | vvi-miR169i | 6 | ......__ | 1 | 75 |
| MIMAT0006546 | vvi-miR169h | 7 | ......__ | 2 | 75 |
| MIMAT0006545 | vvi-miR169b | 7 | ......__ | 2 | 75 |
| MIMAT0006322 | mml-miR-423-3p | 2 | __...... | 7 | 75 |
| MIMAT0006210 | mml-miR-149-5p | 3 | ......__ | 8 | 75 |
| MIMAT0007655 | gga-miR-1749-3p | 2 | ......__ | 7 | 75 |
| MIMAT0007645 | gga-miR-1741 | 2 | ......__ | 7 | 75 |
| MIMAT0007442 | gga-miR-1581 | 6 | _......_ | 1 | 75 |
| MIMAT0007363 | gma-miR171b-3p | 6 | _......_ | 1 | 75 |
| MIMAT0006032 | odi-miR-1480 | 3 | ......__ | 8 | 75 |
| MIMAT0005996 | ptc-miR171j | 6 | _......_ | 1 | 75 |
| MIMAT0005995 | ptc-miR171m | 6 | _......_ | 1 | 75 |
| MIMAT0005994 | ptc-miR171l-3p | 6 | _......_ | 1 | 75 |
| MIMAT0007026 | oan-miR-1363-3p | 8 | _......_ | 3 | 75 |
| MIMAT0005686 | vvi-miR169p | 6 | ......__ | 1 | 75 |
| MIMAT0005685 | vvi-miR169m | 6 | ......__ | 1 | 75 |
| MIMAT0005624 | bna-miR169m | 7 | ......__ | 2 | 75 |
| MIMAT0005313 | rno-miR-423-3p | 2 | __...... | 7 | 75 |
| MIMAT0005211 | ppt-miR1079-5p | 8 | __...... | 3 | 75 |
| MIMAT0020883 | dme-miR-985-5p | 2 | ......__ | 7 | 75 |
| MIMAT0011109 | mtr-miR169h | 7 | ......__ | 2 | 75 |
| MIMAT0011065 | mtr-miR169e-5p | 6 | ......__ | 1 | 75 |
| MIMAT0004263 | ath-miR841a-5p | 8 | _......_ | 3 | 75 |
| MIMAT0003831 | bta-miR-423-3p | 3 | __...... | 8 | 75 |
| MIMAT0017259 | mmu-miR-505-5p | 8 | ......__ | 3 | 75 |
| MIMAT0003454 | mmu-miR-423-3p | 2 | __...... | 7 | 75 |
| MIMAT0014817 | mmu-miR-3106-5p | 1 | ......__ | 6 | 75 |
| MIMAT0017226 | rno-miR-505-5p | 8 | ......__ | 3 | 75 |
| MIMAT0003240 | hsa-miR-575 | 6 | ......__ | 1 | 75 |
| MIMAT0004776 | hsa-miR-505-5p | 8 | ......__ | 3 | 75 |
| MIMAT0001976 | ptc-miR169t | 6 | ......__ | 1 | 75 |
| MIMAT0001970 | ptc-miR169n-5p | 7 | ......__ | 2 | 75 |
| MIMAT0001952 | ptc-miR169aa | 6 | ......__ | 1 | 75 |
| MIMAT0001340 | hsa-miR-423-3p | 2 | __...... | 7 | 75 |
| MIMAT0000911 | ath-miR169g-5p | 7 | ......__ | 2 | 75 |
| MIMAT0000910 | ath-miR169f-5p | 7 | ......__ | 2 | 75 |
| MIMAT0000909 | ath-miR169e | 7 | ......__ | 2 | 75 |
| MIMAT0000908 | ath-miR169d | 7 | ......__ | 2 | 75 |
| MIMAT0000450 | hsa-miR-149-5p | 3 | ......__ | 8 | 75 |
| MIMAT0000159 | mmu-miR-149-5p | 3 | ......__ | 8 | 75 |
