| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tgggaat | 7 | ||
| MIMAT0032494 | ssa-miR-205a-2-3p | 7 | ....... | 1 | 100 |
| MIMAT0032493 | ssa-miR-205a-3p | 7 | ....... | 1 | 100 |
| MIMAT0028169 | dev-miR-D1-5p | 2 | ....... | 8 | 100 |
| MIMAT0025844 | hsa-miR-6716-5p | 1 | ....... | 7 | 100 |
| MIMAT0025228 | ptc-miR6427-3p | 2 | ....... | 8 | 100 |
| MIMAT0037221 | ata-miR2118b-3p | 1 | _...... | 6 | 85 |
| MIMAT0037181 | ata-miR2118a-3p | 1 | _...... | 6 | 85 |
| MIMAT0037126 | ata-miR166b-5p | 1 | _...... | 6 | 85 |
| MIMAT0036813 | oha-miR-204-1-3p | 3 | ......_ | 8 | 85 |
| MIMAT0036236 | chi-miR-450-3p | 3 | ......_ | 8 | 85 |
| MIMAT0036051 | chi-miR-204-3p | 3 | ......_ | 8 | 85 |
| MIMAT0035332 | gsa-miR-9394a-5p | 2 | _...... | 7 | 85 |
| MIMAT0034500 | eca-miR-8965 | 6 | ......_ | 1 | 85 |
| MIMAT0034298 | cfa-miR-8808 | 1 | ......_ | 6 | 85 |
| MIMAT0034205 | gra-miR482c | 6 | ......_ | 1 | 85 |
| MIMAT0033514 | sma-miR-36b-5p | 2 | _...... | 7 | 85 |
| MIMAT0033111 | ppc-miR-8297-5p | 6 | _...... | 1 | 85 |
| MIMAT0033011 | ppc-miR-8263-3p | 3 | ......_ | 8 | 85 |
| MIMAT0032787 | cel-miR-8187-5p | 3 | _...... | 8 | 85 |
| MIMAT0032650 | ssa-miR-459-3p | 3 | _...... | 8 | 85 |
| MIMAT0031811 | cpa-miR172b | 1 | _...... | 6 | 85 |
| MIMAT0031810 | cpa-miR172a | 1 | _...... | 6 | 85 |
| MIMAT0031696 | bbe-miR-4873-5p | 8 | ......_ | 3 | 85 |
| MIMAT0031180 | hsa-miR-7977 | 6 | ......_ | 1 | 85 |
| MIMAT0030273 | bdi-miR7763-3p | 6 | _...... | 1 | 85 |
| MIMAT0030093 | bdi-miR395o-5p | 6 | _...... | 1 | 85 |
| MIMAT0029890 | mmu-miR-7684-5p | 3 | ......_ | 8 | 85 |
| MIMAT0029056 | gga-miR-7451-5p | 3 | ......_ | 8 | 85 |
| MIMAT0028465 | mdo-miR-7249-3p | 1 | ......_ | 6 | 85 |
| MIMAT0028454 | mdo-miR-7244-5p | 3 | ......_ | 8 | 85 |
| MIMAT0028317 | mml-miR-3938-3p | 7 | _...... | 2 | 85 |
| MIMAT0026305 | ccr-miR-459-3p | 3 | _...... | 8 | 85 |
| MIMAT0028054 | mmu-miR-7074-5p | 1 | ......_ | 6 | 85 |
| MIMAT0028008 | mmu-miR-7052-5p | 3 | ......_ | 8 | 85 |
| MIMAT0027818 | mmu-miR-6959-5p | 1 | ......_ | 6 | 85 |
| MIMAT0027379 | hsa-miR-6739-5p | 1 | ......_ | 6 | 85 |
| MIMAT0027367 | hsa-miR-6733-5p | 1 | ......_ | 6 | 85 |
| MIMAT0025526 | han-miR3630-3p | 3 | ......_ | 8 | 85 |
| MIMAT0025289 | hbr-miR408b | 3 | ......_ | 8 | 85 |
| MIMAT0025117 | mmu-miR-6373 | 3 | ......_ | 8 | 85 |
| MIMAT0025095 | mmu-miR-6352 | 3 | ......_ | 8 | 85 |
| MIMAT0024945 | hme-miR-1b | 1 | ......_ | 6 | 85 |
| MIMAT0031169 | ppe-miR482c-3p | 6 | ......_ | 1 | 85 |
| MIMAT0024878 | osa-miR6255 | 1 | ......_ | 6 | 85 |
| MIMAT0024493 | mse-miR-1b | 1 | ......_ | 6 | 85 |
| MIMAT0024391 | ppy-miR-3938 | 7 | _...... | 2 | 85 |
| MIMAT0022790 | sha-miR-204 | 3 | ......_ | 8 | 85 |
| MIMAT0022766 | vun-miR482 | 8 | ......_ | 3 | 85 |
| MIMAT0022100 | aca-miR-5467 | 6 | ......_ | 1 | 85 |
| MIMAT0021854 | aca-miR-204a-3p | 3 | ......_ | 8 | 85 |
| MIMAT0020552 | osa-miR5072 | 8 | _...... | 3 | 85 |
| MIMAT0021002 | gma-miR482c-3p | 6 | ......_ | 1 | 85 |
| MIMAT0020452 | bfl-miR-4873 | 8 | ......_ | 3 | 85 |
| MIMAT0019707 | hsa-miR-4646-5p | 3 | ......_ | 8 | 85 |
| MIMAT0018998 | hsa-miR-4471 | 1 | ......_ | 6 | 85 |
| MIMAT0018473 | csi-miR472 | 8 | ......_ | 3 | 85 |
| MIMAT0018353 | hsa-miR-3938 | 7 | _...... | 2 | 85 |
| MIMAT0018172 | mghv-miR-M1-13-5p | 1 | ......_ | 6 | 85 |
| MIMAT0018143 | pab-miR3710 | 1 | ......_ | 6 | 85 |
| MIMAT0018028 | vvi-miR3630-3p | 3 | ......_ | 8 | 85 |
| MIMAT0016774 | cin-miR-4166-5p | 1 | ......_ | 6 | 85 |
| MIMAT0017837 | rno-miR-3564 | 1 | ......_ | 6 | 85 |
| MIMAT0015718 | ssc-miR-450c-3p | 3 | ......_ | 8 | 85 |
| MIMAT0017769 | esi-miR3454e-5p | 6 | ......_ | 1 | 85 |
| MIMAT0017761 | esi-miR3460-5p | 1 | _...... | 6 | 85 |
| MIMAT0017759 | esi-miR3454b-5p | 6 | ......_ | 1 | 85 |
| MIMAT0017751 | esi-miR3454c-5p | 6 | ......_ | 1 | 85 |
| MIMAT0017747 | esi-miR3454a-5p | 6 | ......_ | 1 | 85 |
| MIMAT0026961 | tgu-miR-2963-5p | 8 | ......_ | 3 | 85 |
| MIMAT0014352 | hsv2-miR-H9-3p | 6 | ......_ | 1 | 85 |
| MIMAT0013788 | bmo-miR-1b-3p | 1 | ......_ | 6 | 85 |
| MIMAT0013627 | bmo-miR-2757-5p | 3 | _...... | 8 | 85 |
| MIMAT0012429 | dsi-miR-991-5p | 6 | ......_ | 1 | 85 |
| MIMAT0012203 | dme-miR-2494-3p | 6 | ......_ | 1 | 85 |
| MIMAT0012024 | bta-miR-2447 | 3 | ......_ | 8 | 85 |
| MIMAT0011914 | bta-miR-2370-5p | 1 | ......_ | 6 | 85 |
| MIMAT0011765 | zma-miR2118f | 6 | ......_ | 1 | 85 |
| MIMAT0011757 | osa-miR2118r | 6 | ......_ | 1 | 85 |
| MIMAT0011744 | osa-miR2118e | 6 | ......_ | 1 | 85 |
| MIMAT0011173 | pvu-miR482-3p | 8 | ......_ | 3 | 85 |
| MIMAT0011165 | mdm-miR482a-3p | 6 | ......_ | 1 | 85 |
| MIMAT0010025 | ppt-miR1023e-3p | 2 | _...... | 7 | 85 |
| MIMAT0009424 | mmu-miR-1953 | 1 | ......_ | 6 | 85 |
| MIMAT0008011 | ptr-miR-1292 | 1 | ......_ | 6 | 85 |
| MIMAT0026878 | mml-miR-450a-1-3p | 3 | ......_ | 8 | 85 |
| MIMAT0007364 | gma-miR482a-3p | 8 | ......_ | 3 | 85 |
| MIMAT0005758 | ssy-miR-513c | 6 | ......_ | 1 | 85 |
| MIMAT0005943 | hsa-miR-1292-5p | 1 | ......_ | 6 | 85 |
| MIMAT0005107 | ppt-miR1023c-3p | 2 | _...... | 7 | 85 |
| MIMAT0004836 | ebv-miR-BART19-5p | 8 | _...... | 3 | 85 |
| MIMAT0003512 | mmu-miR-450b-3p | 3 | ......_ | 8 | 85 |
| MIMAT0002061 | ptc-miR472b | 8 | ......_ | 3 | 85 |
| MIMAT0003408 | dre-miR-459-3p | 3 | _...... | 8 | 85 |
| MIMAT0001587 | osa-miR438 | 6 | ......_ | 1 | 85 |
| MIMAT0017182 | mmu-miR-450a-1-3p | 3 | ......_ | 8 | 85 |
| MIMAT0022700 | hsa-miR-450a-1-3p | 3 | ......_ | 8 | 85 |
| MIMAT0004739 | rno-miR-204-3p | 3 | ......_ | 8 | 85 |
| MIMAT0022693 | hsa-miR-204-3p | 3 | ......_ | 8 | 85 |
| MIMAT0017002 | mmu-miR-204-3p | 3 | ......_ | 8 | 85 |
| MIMAT0020787 | dme-miR-6-1-5p | 2 | _...... | 7 | 85 |
