| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tgggaccg | 8 | ||
| MIMAT0028816 | mdo-miR-7380-5p | 8 | ......._ | 2 | 87 |
| MIMAT0028734 | mdo-miR-7361-5p | 1 | ......._ | 7 | 87 |
| MIMAT0020180 | dme-miR-4960-3p | 2 | ......._ | 8 | 87 |
| MIMAT0019880 | hsa-miR-4746-5p | 8 | _....... | 2 | 87 |
| MIMAT0013845 | bta-miR-2887 | 2 | _....... | 8 | 87 |
| MIMAT0019102 | tca-miR-12-3p | 7 | _....... | 1 | 87 |
| MIMAT0034610 | eca-miR-9065 | 1 | ......t. | 8 | 87 |
| MIMAT0028441 | mmu-miR-7236-3p | 1 | .t...... | 8 | 87 |
| MIMAT0027876 | mmu-miR-6987-5p | 1 | ......a. | 8 | 87 |
| MIMAT0007474 | gga-miR-1608 | 1 | ......a. | 8 | 87 |
| MIMAT0034501 | eca-miR-8966 | 3 | _......_ | 8 | 75 |
| MIMAT0034452 | eca-miR-8924 | 1 | ......__ | 6 | 75 |
| MIMAT0034309 | cfa-miR-8819 | 7 | ......__ | 2 | 75 |
| MIMAT0034134 | gra-miR7506b | 2 | ......__ | 7 | 75 |
| MIMAT0033958 | esi-miR8623c | 6 | ......__ | 1 | 75 |
| MIMAT0033393 | str-miR-8375-3p | 3 | ......__ | 8 | 75 |
| MIMAT0033375 | str-miR-7880p-3p | 3 | ......__ | 8 | 75 |
| MIMAT0032338 | ssa-miR-133a-3p | 8 | _......_ | 3 | 75 |
| MIMAT0031738 | bbe-miR-4869-3p | 2 | _......_ | 7 | 75 |
| MIMAT0031586 | bbe-miR-133-5p | 8 | _......_ | 3 | 75 |
| MIMAT0030888 | stu-miR7998 | 3 | __...... | 8 | 75 |
| MIMAT0030821 | prd-miR-7961-3p | 6 | ......__ | 1 | 75 |
| MIMAT0030413 | hsa-miR-4433b-5p | 8 | ......__ | 3 | 75 |
| MIMAT0029667 | cbn-miR-7625 | 1 | _......_ | 6 | 75 |
| MIMAT0029407 | ipu-miR-133a | 8 | _......_ | 3 | 75 |
| MIMAT0028812 | mdo-miR-7378-5p | 2 | ......__ | 7 | 75 |
| MIMAT0028281 | mml-miR-133d-3p | 8 | _......_ | 3 | 75 |
| MIMAT0026215 | ccr-miR-133a-3p | 8 | _......_ | 3 | 75 |
| MIMAT0024938 | hme-miR-133 | 7 | _......_ | 2 | 75 |
| MIMAT0024792 | hbr-miR6172 | 2 | __...... | 7 | 75 |
| MIMAT0024462 | mse-miR-133 | 8 | _......_ | 3 | 75 |
| MIMAT0024340 | mml-miR-3122 | 3 | ......__ | 8 | 75 |
| MIMAT0023892 | cgr-miR-3072-5p | 2 | _......_ | 7 | 75 |
| MIMAT0022560 | ola-miR-133-3p | 7 | _......_ | 2 | 75 |
| MIMAT0023081 | tur-miR-133-3p | 8 | _......_ | 3 | 75 |
| MIMAT0022444 | ath-miR5666 | 2 | ......__ | 7 | 75 |
| MIMAT0022296 | hsa-miR-5588-3p | 8 | ......__ | 3 | 75 |
| MIMAT0021414 | rmi-miR-5341 | 1 | ......__ | 6 | 75 |
| MIMAT0021345 | mtr-miR5285c | 1 | ......__ | 6 | 75 |
| MIMAT0021344 | mtr-miR5285b | 1 | ......__ | 6 | 75 |
| MIMAT0021343 | mtr-miR5285a | 1 | ......__ | 6 | 75 |
| MIMAT0021341 | mtr-miR5284g | 3 | _......_ | 8 | 75 |
| MIMAT0021340 | mtr-miR5284f | 3 | _......_ | 8 | 75 |
| MIMAT0021339 | mtr-miR5284e | 3 | _......_ | 8 | 75 |
| MIMAT0021338 | mtr-miR5284d | 3 | _......_ | 8 | 75 |
| MIMAT0021337 | mtr-miR5284c | 3 | _......_ | 8 | 75 |
| MIMAT0021335 | mtr-miR5284a | 3 | _......_ | 8 | 75 |
| MIMAT0027083 | bdi-miR5178-5p | 3 | ......__ | 8 | 75 |
| MIMAT0020109 | bfl-miR-4869-3p | 1 | _......_ | 6 | 75 |
| MIMAT0019710 | hsa-miR-4648 | 3 | ......__ | 8 | 75 |
| MIMAT0019683 | osa-miR3981-5p | 1 | ......__ | 6 | 75 |
| MIMAT0019460 | pma-miR-133a | 8 | _......_ | 3 | 75 |
| MIMAT0020956 | hsa-miR-4433a-5p | 7 | ......__ | 2 | 75 |
| MIMAT0018422 | nlo-miR-133 | 8 | _......_ | 3 | 75 |
| MIMAT0018412 | ngi-miR-133 | 8 | _......_ | 3 | 75 |
| MIMAT0018187 | hsa-miR-3913-5p | 3 | ......__ | 8 | 75 |
| MIMAT0018069 | hsa-miR-3649 | 2 | _......_ | 7 | 75 |
| MIMAT0019219 | hsa-miR-3619-3p | 1 | _......_ | 6 | 75 |
| MIMAT0016907 | hsa-miR-4281 | 7 | _......_ | 2 | 75 |
| MIMAT0016852 | hsa-miR-4298 | 2 | ......__ | 7 | 75 |
| MIMAT0016264 | sja-miR-133 | 8 | _......_ | 3 | 75 |
| MIMAT0016222 | ppy-miR-1302 | 2 | ......__ | 7 | 75 |
| MIMAT0015691 | nvi-miR-133 | 8 | _......_ | 3 | 75 |
| MIMAT0015014 | hsa-miR-3144-5p | 3 | _......_ | 8 | 75 |
| MIMAT0014984 | hsa-miR-3122 | 3 | ......__ | 8 | 75 |
| MIMAT0014972 | oar-miR-133 | 8 | _......_ | 3 | 75 |
| MIMAT0014852 | mmu-miR-3072-5p | 2 | _......_ | 7 | 75 |
| MIMAT0014689 | hsv1-miR-H12 | 2 | ......__ | 7 | 75 |
| MIMAT0014437 | cqu-miR-133 | 8 | _......_ | 3 | 75 |
| MIMAT0014275 | aae-miR-133 | 8 | _......_ | 3 | 75 |
| MIMAT0014117 | bma-miR-133 | 8 | _......_ | 3 | 75 |
| MIMAT0019195 | rlcv-miR-rL1-30-5p | 8 | __...... | 3 | 75 |
| MIMAT0013809 | osa-miR2863a | 8 | ......__ | 3 | 75 |
| MIMAT0013080 | eca-miR-711 | 1 | _......_ | 6 | 75 |
| MIMAT0012969 | eca-miR-1302d | 2 | ......__ | 7 | 75 |
| MIMAT0012934 | eca-miR-1302b | 2 | ......__ | 7 | 75 |
| MIMAT0012907 | eca-miR-1302 | 2 | ......__ | 7 | 75 |
| MIMAT0012859 | rno-miR-711 | 1 | _......_ | 6 | 75 |
| MIMAT0012820 | ptr-miR-711 | 1 | _......_ | 6 | 75 |
| MIMAT0012796 | mml-miR-711 | 1 | _......_ | 6 | 75 |
| MIMAT0012734 | hsa-miR-711 | 1 | _......_ | 6 | 75 |
| MIMAT0012719 | hvt-miR-H7-3p | 8 | __...... | 3 | 75 |
| MIMAT0013662 | bmo-miR-2777-5p | 2 | _......_ | 7 | 75 |
| MIMAT0012686 | isc-miR-133 | 8 | _......_ | 3 | 75 |
| MIMAT0012640 | dpu-miR-133 | 8 | _......_ | 3 | 75 |
| MIMAT0013548 | cte-miR-1990c-3p | 1 | ......__ | 6 | 75 |
| MIMAT0012509 | dsi-miR-2577 | 2 | __...... | 7 | 75 |
| MIMAT0011794 | bta-miR-2287 | 2 | ......__ | 7 | 75 |
| MIMAT0011490 | cbr-miR-64b | 2 | __...... | 7 | 75 |
| MIMAT0011258 | sme-miR-133a-3p | 8 | _......_ | 3 | 75 |
| MIMAT0010186 | ssc-miR-133a-3p | 8 | _......_ | 3 | 75 |
| MIMAT0009834 | cfa-miR-133a | 8 | _......_ | 3 | 75 |
| MIMAT0009833 | cfa-miR-133c | 8 | _......_ | 3 | 75 |
| MIMAT0009695 | aqu-miR-2018-3p | 2 | _......_ | 7 | 75 |
| MIMAT0009627 | sko-miR-133 | 8 | _......_ | 3 | 75 |
| MIMAT0009580 | lgi-miR-133-3p | 8 | _......_ | 3 | 75 |
| MIMAT0009526 | cte-miR-133 | 8 | _......_ | 3 | 75 |
| MIMAT0009484 | bfl-miR-133 | 7 | _......_ | 2 | 75 |
| MIMAT0009436 | mmu-miR-1963 | 1 | ......__ | 6 | 75 |
| MIMAT0009426 | mmu-miR-1955-5p | 7 | ......__ | 2 | 75 |
| MIMAT0009072 | dya-miR-133 | 8 | _......_ | 3 | 75 |
| MIMAT0009051 | dwi-miR-133 | 8 | _......_ | 3 | 75 |
| MIMAT0008936 | dvi-miR-133-3p | 8 | _......_ | 3 | 75 |
| MIMAT0008900 | dsi-miR-133 | 8 | _......_ | 3 | 75 |
| MIMAT0008834 | dse-miR-133 | 8 | _......_ | 3 | 75 |
| MIMAT0008712 | dpe-miR-133 | 8 | _......_ | 3 | 75 |
| MIMAT0008678 | dmo-miR-133 | 8 | _......_ | 3 | 75 |
| MIMAT0008620 | dgr-miR-133 | 8 | _......_ | 3 | 75 |
| MIMAT0008490 | der-miR-133 | 8 | _......_ | 3 | 75 |
| MIMAT0008468 | dan-miR-133 | 8 | _......_ | 3 | 75 |
| MIMAT0008400 | hsv1-miR-H3-3p | 2 | ......__ | 7 | 75 |
| MIMAT0019130 | tca-miR-317-5p | 3 | _......_ | 8 | 75 |
| MIMAT0008372 | tca-miR-133-3p | 8 | _......_ | 3 | 75 |
| MIMAT0008021 | ptr-miR-1302 | 2 | ......__ | 7 | 75 |
| MIMAT0011138 | xla-miR-133d | 8 | _......_ | 3 | 75 |
| MIMAT0011137 | xla-miR-133b | 8 | _......_ | 3 | 75 |
| MIMAT0007901 | bmo-miR-133 | 8 | _......_ | 3 | 75 |
| MIMAT0007570 | gga-miR-1683 | 3 | ......__ | 8 | 75 |
| MIMAT0007554 | gga-miR-1670 | 2 | ......__ | 7 | 75 |
| MIMAT0006128 | csa-miR-133 | 8 | _......_ | 3 | 75 |
| MIMAT0006102 | cin-miR-133-3p | 8 | _......_ | 3 | 75 |
| MIMAT0007277 | oan-miR-1418-3p | 8 | __...... | 3 | 75 |
| MIMAT0026761 | oan-miR-1413-5p | 3 | _......_ | 8 | 75 |
| MIMAT0007131 | oan-miR-1383 | 8 | _......_ | 3 | 75 |
| MIMAT0006865 | oan-miR-133a-3p | 8 | _......_ | 3 | 75 |
| MIMAT0005890 | hsa-miR-1302 | 2 | ......__ | 7 | 75 |
| MIMAT0005421 | cre-miR1165-3p | 3 | __...... | 8 | 75 |
| MIMAT0004964 | cre-miR905-5p | 7 | _......_ | 2 | 75 |
| MIMAT0004364 | ppt-miR893 | 3 | ......__ | 8 | 75 |
| MIMAT0004107 | mdo-miR-133a-3p | 8 | _......_ | 3 | 75 |
| MIMAT0003999 | sme-miR-133b-3p | 8 | _......_ | 3 | 75 |
| MIMAT0003708 | xtr-miR-133a | 8 | _......_ | 3 | 75 |
| MIMAT0003597 | xtr-miR-133b | 8 | _......_ | 3 | 75 |
| MIMAT0003596 | xtr-miR-133d | 8 | _......_ | 3 | 75 |
| MIMAT0003595 | xtr-miR-133c | 8 | _......_ | 3 | 75 |
| MIMAT0003901 | ppt-miR1212 | 3 | ......__ | 8 | 75 |
| MIMAT0003501 | mmu-miR-711 | 1 | _......_ | 6 | 75 |
| MIMAT0002247 | mne-miR-133a | 8 | _......_ | 3 | 75 |
| MIMAT0002246 | lla-miR-133a | 8 | _......_ | 3 | 75 |
| MIMAT0002245 | sla-miR-133a | 8 | _......_ | 3 | 75 |
| MIMAT0002241 | ppa-miR-133a | 8 | _......_ | 3 | 75 |
| MIMAT0002240 | age-miR-133a | 8 | _......_ | 3 | 75 |
| MIMAT0002239 | ggo-miR-133a | 8 | _......_ | 3 | 75 |
| MIMAT0031987 | dre-miR-204-2-3p | 3 | ......__ | 8 | 75 |
| MIMAT0001501 | aga-miR-133 | 8 | _......_ | 3 | 75 |
| MIMAT0001475 | ame-miR-133 | 8 | _......_ | 3 | 75 |
| MIMAT0001350 | xla-miR-133a | 8 | _......_ | 3 | 75 |
| MIMAT0001231 | dps-miR-133 | 8 | _......_ | 3 | 75 |
| MIMAT0001176 | gga-miR-133c-3p | 8 | _......_ | 3 | 75 |
| MIMAT0001138 | gga-miR-133b | 8 | _......_ | 3 | 75 |
| MIMAT0001126 | gga-miR-133a-3p | 8 | _......_ | 3 | 75 |
| MIMAT0000340 | dme-miR-133-3p | 8 | _......_ | 3 | 75 |
