| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tgggacg | 7 | ||
| MIMAT0021414 | rmi-miR-5341 | 1 | ....... | 7 | 100 |
| MIMAT0019683 | osa-miR3981-5p | 1 | ....... | 7 | 100 |
| MIMAT0020956 | hsa-miR-4433a-5p | 7 | ....... | 1 | 100 |
| MIMAT0014689 | hsv1-miR-H12 | 2 | ....... | 8 | 100 |
| MIMAT0009436 | mmu-miR-1963 | 1 | ....... | 7 | 100 |
| MIMAT0007554 | gga-miR-1670 | 2 | ....... | 8 | 100 |
| MIMAT0036973 | bta-miR-4449 | 6 | _...... | 1 | 85 |
| MIMAT0035727 | rno-miR-149-3p | 1 | _...... | 6 | 85 |
| MIMAT0035303 | gsa-miR-184b-3p | 1 | _...... | 6 | 85 |
| MIMAT0034610 | eca-miR-9065 | 1 | ......_ | 6 | 85 |
| MIMAT0034452 | eca-miR-8924 | 1 | ......_ | 6 | 85 |
| MIMAT0033958 | esi-miR8623c | 6 | ......_ | 1 | 85 |
| MIMAT0033393 | str-miR-8375-3p | 3 | ......_ | 8 | 85 |
| MIMAT0033375 | str-miR-7880p-3p | 3 | ......_ | 8 | 85 |
| MIMAT0033130 | ppc-miR-360-3p | 8 | _...... | 3 | 85 |
| MIMAT0031826 | cpa-miR398 | 1 | _...... | 6 | 85 |
| MIMAT0030821 | prd-miR-7961-3p | 6 | ......_ | 1 | 85 |
| MIMAT0030413 | hsa-miR-4433b-5p | 8 | ......_ | 3 | 85 |
| MIMAT0028950 | oan-miR-7404-5p | 7 | _...... | 2 | 85 |
| MIMAT0028816 | mdo-miR-7380-5p | 8 | ......_ | 3 | 85 |
| MIMAT0028734 | mdo-miR-7361-5p | 1 | ......_ | 6 | 85 |
| MIMAT0028518 | mdo-miR-92b-5p | 2 | _...... | 7 | 85 |
| MIMAT0027876 | mmu-miR-6987-5p | 1 | ......_ | 6 | 85 |
| MIMAT0024340 | mml-miR-3122 | 3 | ......_ | 8 | 85 |
| MIMAT0024011 | cgr-miR-92b-5p | 2 | _...... | 7 | 85 |
| MIMAT0023680 | ame-miR-6056 | 3 | _...... | 8 | 85 |
| MIMAT0022296 | hsa-miR-5588-3p | 8 | ......_ | 3 | 85 |
| MIMAT0021345 | mtr-miR5285c | 1 | ......_ | 6 | 85 |
| MIMAT0021344 | mtr-miR5285b | 1 | ......_ | 6 | 85 |
| MIMAT0021343 | mtr-miR5285a | 1 | ......_ | 6 | 85 |
| MIMAT0027083 | bdi-miR5178-5p | 3 | ......_ | 8 | 85 |
| MIMAT0019710 | hsa-miR-4648 | 3 | ......_ | 8 | 85 |
| MIMAT0018968 | hsa-miR-4449 | 6 | _...... | 1 | 85 |
| MIMAT0018187 | hsa-miR-3913-5p | 3 | ......_ | 8 | 85 |
| MIMAT0015075 | hsa-miR-3191-3p | 3 | _...... | 8 | 85 |
| MIMAT0014984 | hsa-miR-3122 | 3 | ......_ | 8 | 85 |
| MIMAT0014473 | tgu-miR-2966 | 3 | _...... | 8 | 85 |
| MIMAT0015360 | zma-miR408b-5p | 3 | _...... | 8 | 85 |
| MIMAT0017377 | ssc-miR-92b-5p | 2 | _...... | 7 | 85 |
| MIMAT0013809 | osa-miR2863a | 8 | ......_ | 3 | 85 |
| MIMAT0013548 | cte-miR-1990c-3p | 1 | ......_ | 6 | 85 |
| MIMAT0026810 | mml-miR-92b-5p | 2 | _...... | 7 | 85 |
| MIMAT0007570 | gga-miR-1683 | 3 | ......_ | 8 | 85 |
| MIMAT0007474 | gga-miR-1608 | 1 | ......_ | 6 | 85 |
| MIMAT0017319 | rno-miR-92b-5p | 2 | _...... | 7 | 85 |
| MIMAT0004364 | ppt-miR893 | 3 | ......_ | 8 | 85 |
| MIMAT0017278 | mmu-miR-92b-5p | 2 | _...... | 7 | 85 |
| MIMAT0003901 | ppt-miR1212 | 3 | ......_ | 8 | 85 |
| MIMAT0004792 | hsa-miR-92b-5p | 2 | _...... | 7 | 85 |
| MIMAT0031987 | dre-miR-204-2-3p | 3 | ......_ | 8 | 85 |
