| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tgggggag | 8 | ||
| MIMAT0028119 | hsa-miR-7111-5p | 1 | ........ | 8 | 100 |
| MIMAT0027844 | mmu-miR-6971-5p | 1 | ........ | 8 | 100 |
| MIMAT0027640 | hsa-miR-6870-5p | 1 | ........ | 8 | 100 |
| MIMAT0022491 | hsa-miR-5698 | 1 | ........ | 8 | 100 |
| MIMAT0019838 | hsa-miR-4723-5p | 1 | ........ | 8 | 100 |
| MIMAT0007683 | gga-miR-1773-5p | 1 | ........ | 8 | 100 |
| MIMAT0015238 | kshv-miR-K12-12-3p | 1 | ........ | 8 | 100 |
| MIMAT0036891 | oha-miR-30b-3p | 2 | ......._ | 8 | 87 |
| MIMAT0036172 | chi-miR-361-3p | 7 | ......._ | 1 | 87 |
| MIMAT0034774 | efu-miR-9194 | 2 | ......._ | 8 | 87 |
| MIMAT0028740 | mdo-miR-7364-5p | 2 | ......._ | 8 | 87 |
| MIMAT0028364 | mml-miR-7200-5p | 7 | ......._ | 1 | 87 |
| MIMAT0028135 | mmu-miR-7119-5p | 2 | ......._ | 8 | 87 |
| MIMAT0028052 | mmu-miR-7073-5p | 1 | ......._ | 7 | 87 |
| MIMAT0027995 | mmu-miR-7045-3p | 8 | _....... | 2 | 87 |
| MIMAT0027952 | mmu-miR-7024-5p | 2 | ......._ | 8 | 87 |
| MIMAT0027950 | mmu-miR-7023-5p | 2 | ......._ | 8 | 87 |
| MIMAT0027782 | mmu-miR-6941-5p | 2 | ......._ | 8 | 87 |
| MIMAT0025721 | gga-miR-6625-5p | 1 | ......._ | 7 | 87 |
| MIMAT0021314 | mtr-miR5276 | 2 | _....... | 8 | 87 |
| MIMAT0021275 | mtr-miR5266 | 2 | ......._ | 8 | 87 |
| MIMAT0019739 | hsa-miR-4665-5p | 2 | ......._ | 8 | 87 |
| MIMAT0016199 | ppy-miR-1275 | 2 | ......._ | 8 | 87 |
| MIMAT0015849 | ppy-miR-361-3p | 7 | ......._ | 1 | 87 |
| MIMAT0013209 | eca-miR-361-3p | 7 | ......._ | 1 | 87 |
| MIMAT0008115 | ptr-miR-361 | 7 | ......._ | 1 | 87 |
| MIMAT0007996 | ptr-miR-1275 | 2 | ......._ | 8 | 87 |
| MIMAT0006287 | mml-miR-361-3p | 7 | ......._ | 1 | 87 |
| MIMAT0005929 | hsa-miR-1275 | 2 | ......._ | 8 | 87 |
| MIMAT0017075 | mmu-miR-361-3p | 7 | ......._ | 1 | 87 |
| MIMAT0004682 | hsa-miR-361-3p | 7 | ......._ | 1 | 87 |
| MIMAT0034985 | efu-miR-4667 | 1 | ......c. | 8 | 87 |
| MIMAT0034035 | gra-miR7486d | 1 | ......c. | 8 | 87 |
| MIMAT0032780 | ath-miR8181 | 1 | ......t. | 8 | 87 |
| MIMAT0031773 | hbv-miR-B22-3p | 1 | .a...... | 8 | 87 |
| MIMAT0031394 | mmu-miR-8093 | 1 | .t...... | 8 | 87 |
| MIMAT0028117 | hsa-miR-7110-5p | 1 | ......t. | 8 | 87 |
| MIMAT0027916 | mmu-miR-7006-5p | 1 | ......t. | 8 | 87 |
| MIMAT0027678 | hsa-miR-6889-5p | 1 | .c...... | 8 | 87 |
| MIMAT0027586 | hsa-miR-6842-5p | 1 | ......t. | 8 | 87 |
| MIMAT0025688 | gga-miR-6594-5p | 1 | ......t. | 8 | 87 |
| MIMAT0018904 | tca-miR-3900-5p | 1 | ......t. | 8 | 87 |
| MIMAT0012032 | bta-miR-1777a | 1 | ......c. | 8 | 87 |
| MIMAT0012005 | bta-miR-2433 | 1 | ......c. | 8 | 87 |
| MIMAT0012002 | bta-miR-2431-3p | 8 | ......t. | 1 | 87 |
| MIMAT0034988 | efu-miR-9313 | 3 | ......__ | 8 | 75 |
| MIMAT0034948 | efu-miR-9290 | 8 | __...... | 3 | 75 |
| MIMAT0034826 | efu-miR-9224 | 6 | _......_ | 1 | 75 |
| MIMAT0034481 | eca-miR-8952 | 8 | ......__ | 3 | 75 |
| MIMAT0032613 | ssa-miR-30e-3-3p | 3 | __...... | 8 | 75 |
| MIMAT0029335 | lja-miR7520 | 3 | _......_ | 8 | 75 |
| MIMAT0029022 | oan-miR-7422b-5p | 2 | __...... | 7 | 75 |
| MIMAT0028606 | mdo-miR-7306-5p | 2 | ......__ | 7 | 75 |
| MIMAT0028392 | mmu-miR-7212-5p | 3 | ......__ | 8 | 75 |
| MIMAT0028294 | mml-miR-6794-5p | 3 | _......_ | 8 | 75 |
| MIMAT0028149 | ssc-miR-7137-5p | 2 | _......_ | 7 | 75 |
| MIMAT0028131 | mmu-miR-7117-5p | 3 | ......__ | 8 | 75 |
| MIMAT0028115 | hsa-miR-7109-5p | 2 | ......__ | 7 | 75 |
| MIMAT0028058 | mmu-miR-7076-5p | 2 | __...... | 7 | 75 |
| MIMAT0028056 | mmu-miR-7075-5p | 2 | __...... | 7 | 75 |
| MIMAT0028050 | mmu-miR-7072-5p | 3 | __...... | 8 | 75 |
| MIMAT0028044 | mmu-miR-7069-5p | 2 | ......__ | 7 | 75 |
| MIMAT0027964 | mmu-miR-7030-5p | 2 | __...... | 7 | 75 |
| MIMAT0027874 | mmu-miR-6986-5p | 2 | __...... | 7 | 75 |
| MIMAT0027862 | mmu-miR-6980-5p | 2 | ......__ | 7 | 75 |
| MIMAT0027860 | mmu-miR-6979-5p | 1 | __...... | 6 | 75 |
| MIMAT0027720 | mmu-miR-6910-5p | 1 | ......__ | 6 | 75 |
| MIMAT0027694 | mmu-miR-6897-5p | 1 | ......__ | 6 | 75 |
| MIMAT0027674 | hsa-miR-6887-5p | 1 | ......__ | 6 | 75 |
| MIMAT0027674 | hsa-miR-6887-5p | 3 | _......_ | 8 | 75 |
| MIMAT0027596 | hsa-miR-6848-5p | 1 | ......__ | 6 | 75 |
| MIMAT0027592 | hsa-miR-6846-5p | 1 | ......__ | 6 | 75 |
| MIMAT0027553 | hsa-miR-6826-3p | 6 | __...... | 1 | 75 |
| MIMAT0027550 | hsa-miR-6825-5p | 2 | __...... | 7 | 75 |
| MIMAT0027506 | hsa-miR-6803-5p | 2 | ......__ | 7 | 75 |
| MIMAT0027498 | hsa-miR-6799-5p | 1 | __...... | 6 | 75 |
| MIMAT0027490 | hsa-miR-6795-5p | 1 | ......__ | 6 | 75 |
| MIMAT0027490 | hsa-miR-6795-5p | 3 | _......_ | 8 | 75 |
| MIMAT0027488 | hsa-miR-6794-5p | 3 | _......_ | 8 | 75 |
| MIMAT0027454 | hsa-miR-6777-5p | 3 | __...... | 8 | 75 |
| MIMAT0027427 | hsa-miR-6763-3p | 6 | __...... | 1 | 75 |
| MIMAT0027426 | hsa-miR-6763-5p | 3 | __...... | 8 | 75 |
| MIMAT0027402 | hsa-miR-6751-5p | 2 | ......__ | 7 | 75 |
| MIMAT0025862 | blv-miR-B3-5p | 7 | _......_ | 2 | 75 |
| MIMAT0025571 | bta-miR-6535 | 3 | _......_ | 8 | 75 |
| MIMAT0025311 | prv-miR-LLT8 | 2 | ......__ | 7 | 75 |
| MIMAT0025302 | mja-miR-6493-3p | 2 | _......_ | 7 | 75 |
| MIMAT0027288 | ppe-miR477b-3p | 3 | ......__ | 8 | 75 |
| MIMAT0027287 | ppe-miR477a-3p | 3 | ......__ | 8 | 75 |
| MIMAT0024337 | mml-miR-4716 | 3 | _......_ | 8 | 75 |
| MIMAT0023715 | hsa-miR-6090 | 1 | __...... | 6 | 75 |
| MIMAT0023366 | hco-miR-5910 | 7 | __...... | 2 | 75 |
| MIMAT0023227 | gma-miR482e | 3 | ......__ | 8 | 75 |
| MIMAT0021671 | gma-miR482d-5p | 3 | ......__ | 8 | 75 |
| MIMAT0021043 | hsa-miR-5010-5p | 2 | _......_ | 7 | 75 |
| MIMAT0019827 | hsa-miR-4716-3p | 3 | _......_ | 8 | 75 |
| MIMAT0027038 | hsa-miR-1343-5p | 2 | __...... | 7 | 75 |
| MIMAT0019623 | pma-miR-4590 | 3 | _......_ | 8 | 75 |
| MIMAT0019356 | mmu-miR-3971 | 6 | __...... | 1 | 75 |
| MIMAT0019064 | hsa-miR-4525 | 2 | _......_ | 7 | 75 |
| MIMAT0018999 | hsa-miR-4472 | 3 | ......__ | 8 | 75 |
| MIMAT0018966 | hsa-miR-4447 | 3 | ......__ | 8 | 75 |
| MIMAT0018286 | gma-miR482b-5p | 3 | ......__ | 8 | 75 |
| MIMAT0018654 | tca-miR-3815-5p | 1 | ......__ | 6 | 75 |
| MIMAT0018105 | hsa-miR-3679-3p | 8 | _......_ | 3 | 75 |
| MIMAT0016901 | hsa-miR-4271 | 1 | _......_ | 6 | 75 |
| MIMAT0016238 | ppy-miR-1909 | 3 | ......__ | 8 | 75 |
| MIMAT0016139 | ppy-miR-939 | 2 | __...... | 7 | 75 |
| MIMAT0016075 | ppy-miR-637 | 3 | ......__ | 8 | 75 |
| MIMAT0015052 | hsa-miR-3175 | 2 | __...... | 7 | 75 |
| MIMAT0015023 | hsa-miR-3150a-3p | 3 | __...... | 8 | 75 |
| MIMAT0019189 | rlcv-miR-rL1-22-5p | 3 | ......__ | 8 | 75 |
| MIMAT0013934 | ssc-miR-361-3p | 6 | ......__ | 1 | 75 |
| MIMAT0012600 | bmo-miR-2724 | 6 | _......_ | 1 | 75 |
| MIMAT0012035 | bta-miR-2454-5p | 2 | ......__ | 7 | 75 |
| MIMAT0011947 | bta-miR-2394 | 8 | __...... | 3 | 75 |
| MIMAT0011930 | bta-miR-2382-5p | 2 | __...... | 7 | 75 |
| MIMAT0011878 | bta-miR-2343 | 3 | __...... | 8 | 75 |
| MIMAT0011839 | bta-miR-1343-5p | 2 | __...... | 7 | 75 |
| MIMAT0011735 | ppc-miR-2247 | 7 | __...... | 2 | 75 |
| MIMAT0019105 | tca-miR-14-5p | 2 | __...... | 7 | 75 |
| MIMAT0008346 | ptr-miR-939 | 2 | __...... | 7 | 75 |
| MIMAT0008336 | ptr-miR-920 | 1 | __...... | 6 | 75 |
| MIMAT0008293 | ptr-miR-637 | 3 | ......__ | 8 | 75 |
| MIMAT0007877 | mmu-miR-1894-5p | 8 | __...... | 3 | 75 |
| MIMAT0006540 | mml-miR-939 | 2 | __...... | 7 | 75 |
| MIMAT0006532 | mml-miR-920 | 1 | __...... | 6 | 75 |
| MIMAT0006464 | mml-miR-612 | 3 | __...... | 8 | 75 |
| MIMAT0026892 | mml-miR-505-5p | 1 | __...... | 6 | 75 |
| MIMAT0007225 | oan-miR-1408 | 2 | __...... | 7 | 75 |
| MIMAT0005545 | mcmv-miR-M23-2-3p | 2 | ......__ | 7 | 75 |
| MIMAT0005149 | ppt-miR1039-3p | 1 | __...... | 6 | 75 |
| MIMAT0032027 | dme-miR-1004-5p | 3 | ......__ | 8 | 75 |
| MIMAT0004982 | hsa-miR-939-5p | 2 | __...... | 7 | 75 |
| MIMAT0004410 | rrv-miR-rR1-4-5p | 2 | __...... | 7 | 75 |
| MIMAT0004970 | hsa-miR-920 | 1 | __...... | 6 | 75 |
| MIMAT0009207 | mdv1-miR-M3-3p | 1 | ......__ | 6 | 75 |
| MIMAT0015227 | bmo-miR-14-5p | 2 | __...... | 7 | 75 |
| MIMAT0032008 | dre-miR-139-3p | 2 | __...... | 7 | 75 |
| MIMAT0003307 | hsa-miR-637 | 3 | ......__ | 8 | 75 |
| MIMAT0003294 | hsa-miR-625-5p | 2 | _......_ | 7 | 75 |
| MIMAT0017199 | rno-miR-361-3p | 6 | ......__ | 1 | 75 |
| MIMAT0026512 | gga-miR-30b-3p | 2 | ......__ | 7 | 75 |
