| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tggtaat | 7 | ||
| MIMAT0030400 | ptc-miR7813 | 1 | ....... | 7 | 100 |
| MIMAT0023558 | tca-miR-6008-3p | 7 | ....... | 1 | 100 |
| MIMAT0017193 | rno-miR-451-3p | 2 | ....... | 8 | 100 |
| MIMAT0036703 | oha-miR-133a-3-5p | 3 | ......_ | 8 | 85 |
| MIMAT0035170 | efu-miR-9359 | 8 | _...... | 3 | 85 |
| MIMAT0033258 | ppc-miR-8282c-5p | 6 | ......_ | 1 | 85 |
| MIMAT0032898 | ppc-miR-8227-5p | 1 | ......_ | 6 | 85 |
| MIMAT0030507 | prd-miR-7877-3p | 6 | ......_ | 1 | 85 |
| MIMAT0030387 | ptc-miR7826 | 6 | ......_ | 1 | 85 |
| MIMAT0028543 | mdo-miR-7284-3p | 6 | ......_ | 1 | 85 |
| MIMAT0026385 | bma-miR-5882a | 3 | _...... | 8 | 85 |
| MIMAT0026365 | bma-miR-5866 | 6 | ......_ | 1 | 85 |
| MIMAT0025271 | ptc-miR482b-3p | 6 | ......_ | 1 | 85 |
| MIMAT0024956 | hme-miR-2765 | 1 | ......_ | 6 | 85 |
| MIMAT0027242 | pgi-miR6135b | 1 | ......_ | 6 | 85 |
| MIMAT0027241 | pgi-miR6135a | 1 | ......_ | 6 | 85 |
| MIMAT0024470 | mse-miR-2765 | 1 | ......_ | 6 | 85 |
| MIMAT0024287 | ggo-miR-556 | 8 | _...... | 3 | 85 |
| MIMAT0023551 | ame-miR-2765-5p | 1 | ......_ | 6 | 85 |
| MIMAT0019025 | hsa-miR-4490 | 3 | ......_ | 8 | 85 |
| MIMAT0018259 | gma-miR4363 | 8 | _...... | 3 | 85 |
| MIMAT0018630 | tca-miR-2765-5p | 1 | ......_ | 6 | 85 |
| MIMAT0018605 | ame-miR-3736 | 8 | _...... | 3 | 85 |
| MIMAT0016763 | cin-miR-4157-5p | 1 | ......_ | 6 | 85 |
| MIMAT0016734 | cin-miR-4137-3p | 3 | ......_ | 8 | 85 |
| MIMAT0014787 | api-miR-2765 | 1 | ......_ | 6 | 85 |
| MIMAT0014751 | api-miR-3016 | 3 | ......_ | 8 | 85 |
| MIMAT0014669 | hma-miR-3003b-5p | 6 | ......_ | 1 | 85 |
| MIMAT0014667 | hma-miR-3003a-5p | 6 | ......_ | 1 | 85 |
| MIMAT0014285 | aae-miR-2765 | 1 | ......_ | 6 | 85 |
| MIMAT0013640 | bmo-miR-2765 | 1 | ......_ | 6 | 85 |
| MIMAT0011725 | ppc-miR-2270 | 3 | ......_ | 8 | 85 |
| MIMAT0032081 | dvi-miR-309-5p | 1 | ......_ | 6 | 85 |
| MIMAT0008237 | ptr-miR-556 | 8 | _...... | 3 | 85 |
| MIMAT0015259 | cin-miR-133-5p | 3 | ......_ | 8 | 85 |
| MIMAT0005989 | osa-miR1438 | 3 | _...... | 8 | 85 |
| MIMAT0007127 | oan-miR-429-5p | 8 | ......_ | 3 | 85 |
| MIMAT0004897 | mmu-miR-654-5p | 1 | ......_ | 6 | 85 |
| MIMAT0004266 | ath-miR844-5p | 1 | ......_ | 6 | 85 |
| MIMAT0012111 | sme-miR-92-5p | 1 | ......_ | 6 | 85 |
| MIMAT0004793 | hsa-miR-556-3p | 8 | _...... | 3 | 85 |
| MIMAT0031971 | dre-miR-133c-5p | 3 | ......_ | 8 | 85 |
| MIMAT0026537 | gga-miR-133c-5p | 3 | ......_ | 8 | 85 |
| MIMAT0003473 | mmu-miR-133a-5p | 3 | ......_ | 8 | 85 |
