| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tggtgtt | 7 | ||
| MIMAT0035592 | dvi-miR-971-3p | 2 | ....... | 8 | 100 |
| MIMAT0034986 | efu-miR-9312 | 7 | ....... | 1 | 100 |
| MIMAT0034876 | efu-miR-9257 | 2 | ....... | 8 | 100 |
| MIMAT0034477 | eca-miR-8948 | 1 | ....... | 7 | 100 |
| MIMAT0028648 | mdo-miR-7324-5p | 8 | ....... | 2 | 100 |
| MIMAT0024998 | hme-miR-971 | 2 | ....... | 8 | 100 |
| MIMAT0020519 | ath-miR5015 | 2 | ....... | 8 | 100 |
| MIMAT0019877 | hsa-miR-3591-3p | 8 | ....... | 2 | 100 |
| MIMAT0018544 | ame-miR-971 | 2 | ....... | 8 | 100 |
| MIMAT0017893 | rno-miR-3591 | 7 | ....... | 1 | 100 |
| MIMAT0014745 | api-miR-971 | 2 | ....... | 8 | 100 |
| MIMAT0012226 | dps-miR-971-3p | 2 | ....... | 8 | 100 |
| MIMAT0005487 | dme-miR-971-3p | 2 | ....... | 8 | 100 |
| MIMAT0026573 | mml-miR-21-3p | 8 | ....... | 2 | 100 |
| MIMAT0002180 | kshv-miR-K12-10b | 1 | ....... | 7 | 100 |
| MIMAT0004494 | hsa-miR-21-3p | 8 | ....... | 2 | 100 |
| MIMAT0035345 | gsa-miR-9399-3p | 1 | ......_ | 6 | 85 |
| MIMAT0034532 | eca-miR-8986b | 1 | ......_ | 6 | 85 |
| MIMAT0034232 | gra-miR8782 | 3 | ......_ | 8 | 85 |
| MIMAT0031861 | lus-miR398f | 1 | _...... | 6 | 85 |
| MIMAT0031535 | ppe-miR3627-3p | 1 | ......_ | 6 | 85 |
| MIMAT0031181 | hsa-miR-7978 | 3 | ......_ | 8 | 85 |
| MIMAT0030563 | prd-miR-7911c-3p | 3 | ......_ | 8 | 85 |
| MIMAT0029035 | gga-miR-7440-3p | 3 | ......_ | 8 | 85 |
| MIMAT0027767 | mmu-miR-6933-3p | 2 | _...... | 7 | 85 |
| MIMAT0027330 | ppe-miR6294 | 1 | ......_ | 6 | 85 |
| MIMAT0024301 | ggo-miR-609 | 3 | _...... | 8 | 85 |
| MIMAT0022165 | osa-miR5530 | 3 | ......_ | 8 | 85 |
| MIMAT0022122 | osa-miR5489 | 3 | _...... | 8 | 85 |
| MIMAT0021570 | asu-miR-5355-5p | 8 | _...... | 3 | 85 |
| MIMAT0021212 | mtr-miR5228 | 3 | ......_ | 8 | 85 |
| MIMAT0021005 | gma-miR1507c-5p | 3 | _...... | 8 | 85 |
| MIMAT0020189 | dme-miR-4965-3p | 8 | ......_ | 3 | 85 |
| MIMAT0020161 | dme-miR-4949-3p | 3 | ......_ | 8 | 85 |
| MIMAT0019786 | hsa-miR-4694-5p | 2 | _...... | 7 | 85 |
| MIMAT0018730 | tca-miR-279c-5p | 3 | _...... | 8 | 85 |
| MIMAT0018695 | tca-miR-3832-3p | 6 | ......_ | 1 | 85 |
| MIMAT0018171 | mghv-miR-M1-12-3p | 3 | ......_ | 8 | 85 |
| MIMAT0018010 | vvi-miR2950-3p | 1 | ......_ | 6 | 85 |
| MIMAT0016805 | cin-miR-4187-5p | 3 | ......_ | 8 | 85 |
| MIMAT0016641 | cin-miR-4076-3p | 1 | _...... | 6 | 85 |
| MIMAT0016614 | cin-miR-4063-5p | 6 | _...... | 1 | 85 |
| MIMAT0017862 | rno-miR-3576 | 8 | ......_ | 3 | 85 |
| MIMAT0017854 | rno-miR-1188-5p | 1 | ......_ | 6 | 85 |
| MIMAT0014434 | cqu-miR-2941-1-5p | 3 | ......_ | 8 | 85 |
| MIMAT0014348 | ghr-miR2950 | 1 | ......_ | 6 | 85 |
| MIMAT0012357 | dps-miR-2548-3p | 3 | ......_ | 8 | 85 |
| MIMAT0008272 | ptr-miR-609 | 3 | _...... | 8 | 85 |
| MIMAT0006462 | mml-miR-609 | 3 | _...... | 8 | 85 |
| MIMAT0006140 | mdo-miR-1541 | 1 | ......_ | 6 | 85 |
| MIMAT0007346 | gga-miR-1467-3p | 8 | ......_ | 3 | 85 |
| MIMAT0005977 | osa-miR810b.1 | 8 | _...... | 3 | 85 |
| MIMAT0005843 | mmu-miR-1188-5p | 1 | ......_ | 6 | 85 |
| MIMAT0004321 | ath-miR869.2 | 3 | ......_ | 8 | 85 |
| MIMAT0003277 | hsa-miR-609 | 3 | _...... | 8 | 85 |
