| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tggtttgc | 8 | ||
| MIMAT0009352 | bta-miR-584 | 1 | ........ | 8 | 100 |
| MIMAT0030197 | bdi-miR7731-3p | 2 | _....... | 8 | 87 |
| MIMAT0029877 | mmu-miR-6715-3p | 8 | ......._ | 2 | 87 |
| MIMAT0028769 | mdo-miR-15c-3p | 7 | ......._ | 1 | 87 |
| MIMAT0028729 | mdo-miR-7358-3p | 2 | _....... | 8 | 87 |
| MIMAT0028196 | dev-miR-D21-5p | 1 | ......._ | 7 | 87 |
| MIMAT0025841 | hsa-miR-6715a-3p | 8 | ......._ | 2 | 87 |
| MIMAT0023971 | cgr-miR-497-3p | 7 | ......._ | 1 | 87 |
| MIMAT0019530 | pma-miR-218a-3p | 2 | ......._ | 8 | 87 |
| MIMAT0015581 | bmo-miR-3385-5p | 8 | _....... | 2 | 87 |
| MIMAT0026946 | mdo-miR-497-3p | 7 | ......._ | 1 | 87 |
| MIMAT0011823 | bta-miR-1603 | 2 | ......._ | 8 | 87 |
| MIMAT0026887 | mml-miR-497-3p | 7 | ......._ | 1 | 87 |
| MIMAT0026774 | gga-miR-1555-5p | 8 | _....... | 2 | 87 |
| MIMAT0017247 | mmu-miR-497a-3p | 7 | ......._ | 1 | 87 |
| MIMAT0017230 | rno-miR-497-3p | 8 | ......._ | 2 | 87 |
| MIMAT0004768 | hsa-miR-497-3p | 7 | ......._ | 1 | 87 |
| MIMAT0035027 | efu-miR-299 | 1 | ......a. | 8 | 87 |
| MIMAT0024142 | ggo-miR-299 | 1 | ......a. | 8 | 87 |
| MIMAT0019251 | oar-miR-299-5p | 1 | ......a. | 8 | 87 |
| MIMAT0016203 | ppy-miR-1282 | 1 | .c...... | 8 | 87 |
| MIMAT0015813 | ppy-miR-299-5p | 1 | ......a. | 8 | 87 |
| MIMAT0017711 | aly-miR3440-5p | 1 | ......c. | 8 | 87 |
| MIMAT0015442 | bmo-miR-3258 | 8 | ......t. | 1 | 87 |
| MIMAT0012889 | eca-miR-1282 | 1 | .c...... | 8 | 87 |
| MIMAT0012801 | ptr-miR-299 | 1 | ......a. | 8 | 87 |
| MIMAT0009954 | bta-miR-1282 | 1 | .c...... | 8 | 87 |
| MIMAT0009885 | cfa-miR-299 | 1 | ......a. | 8 | 87 |
| MIMAT0009274 | bta-miR-299 | 1 | ......a. | 8 | 87 |
| MIMAT0008001 | ptr-miR-1282 | 1 | .c...... | 8 | 87 |
| MIMAT0006255 | mml-miR-299-5p | 1 | ......a. | 8 | 87 |
| MIMAT0007714 | gga-miR-1798-3p | 1 | ......t. | 8 | 87 |
| MIMAT0005940 | hsa-miR-1282 | 1 | .c...... | 8 | 87 |
| MIMAT0005258 | smo-miR1101-3p | 1 | .t...... | 8 | 87 |
| MIMAT0000901 | rno-miR-299a-5p | 1 | ......a. | 8 | 87 |
| MIMAT0002890 | hsa-miR-299-5p | 1 | ......a. | 8 | 87 |
| MIMAT0000377 | mmu-miR-299a-5p | 1 | ......a. | 8 | 87 |
| MIMAT0037227 | ata-miR2275c-3p | 3 | ......__ | 8 | 75 |
| MIMAT0036990 | tae-miR9777 | 7 | __...... | 2 | 75 |
| MIMAT0036880 | oha-miR-29b-2-5p | 2 | ......__ | 7 | 75 |
| MIMAT0036878 | oha-miR-29b-1-5p | 2 | ......__ | 7 | 75 |
| MIMAT0036837 | oha-miR-218-1-3p | 2 | ......__ | 7 | 75 |
| MIMAT0036260 | chi-miR-497-3p | 8 | _......_ | 3 | 75 |
| MIMAT0036114 | chi-miR-29b-5p | 2 | ......__ | 7 | 75 |
| MIMAT0035777 | tae-miR2275-3p | 3 | ......__ | 8 | 75 |
| MIMAT0035543 | ath-miR826b | 1 | ......__ | 6 | 75 |
| MIMAT0035535 | bdi-miR2275c | 3 | ......__ | 8 | 75 |
| MIMAT0035533 | bdi-miR2275a | 3 | ......__ | 8 | 75 |
| MIMAT0035510 | bdi-miR159c | 3 | ......__ | 8 | 75 |
| MIMAT0034723 | eca-miR-9147 | 3 | _......_ | 8 | 75 |
| MIMAT0033761 | pxy-miR-6497 | 2 | _......_ | 7 | 75 |
| MIMAT0033432 | str-miR-8386-5p | 3 | _......_ | 8 | 75 |
| MIMAT0033093 | ppc-miR-8290-5p | 3 | ......__ | 8 | 75 |
| MIMAT0032663 | ssa-miR-551-5p | 7 | ......__ | 2 | 75 |
| MIMAT0032583 | ssa-miR-29a-5p | 2 | ......__ | 7 | 75 |
| MIMAT0030590 | prd-miR-7880c-5p | 2 | _......_ | 7 | 75 |
| MIMAT0030179 | bdi-miR7725a-3p | 7 | __...... | 2 | 75 |
| MIMAT0030087 | bdi-miR166h-5p | 1 | _......_ | 6 | 75 |
| MIMAT0029492 | ipu-miR-29c | 2 | ......__ | 7 | 75 |
| MIMAT0029308 | mes-miR2275 | 3 | ......__ | 8 | 75 |
| MIMAT0028517 | mdo-miR-7272-3p | 7 | _......_ | 2 | 75 |
| MIMAT0031047 | mdo-miR-29b-2-5p | 3 | ......__ | 8 | 75 |
| MIMAT0028472 | mdo-miR-7253-5p | 8 | __...... | 3 | 75 |
| MIMAT0028035 | mmu-miR-7065-3p | 2 | ......__ | 7 | 75 |
| MIMAT0028023 | mmu-miR-7059-3p | 2 | __...... | 7 | 75 |
| MIMAT0027897 | mmu-miR-6997-3p | 7 | _......_ | 2 | 75 |
| MIMAT0027443 | hsa-miR-6771-3p | 6 | _......_ | 1 | 75 |
| MIMAT0025843 | hsa-miR-6715b-3p | 8 | _......_ | 3 | 75 |
| MIMAT0025325 | pde-miR159 | 3 | ......__ | 8 | 75 |
| MIMAT0025172 | mmu-miR-6417 | 8 | __...... | 3 | 75 |
| MIMAT0025081 | mmu-miR-6338 | 2 | ......__ | 7 | 75 |
| MIMAT0024585 | bta-miR-2285j | 8 | ......__ | 3 | 75 |
| MIMAT0023885 | cgr-miR-29b-5p | 3 | ......__ | 8 | 75 |
| MIMAT0023520 | ath-miR5997 | 8 | ......__ | 3 | 75 |
| MIMAT0023418 | hco-miR-5904c | 6 | _......_ | 1 | 75 |
| MIMAT0023113 | tur-miR-263a-3p | 1 | ......__ | 6 | 75 |
| MIMAT0021589 | asu-miR-5363-3p | 3 | _......_ | 8 | 75 |
| MIMAT0021513 | asu-miR-279b-5p | 3 | ......__ | 8 | 75 |
| MIMAT0021079 | hsa-miR-5087 | 2 | _......_ | 7 | 75 |
| MIMAT0021038 | hsa-miR-548ap-3p | 8 | ......__ | 3 | 75 |
| MIMAT0019884 | hsa-miR-4748 | 3 | _......_ | 8 | 75 |
| MIMAT0019629 | pma-miR-4596 | 2 | _......_ | 7 | 75 |
| MIMAT0019420 | pma-miR-29d-5p | 2 | ......__ | 7 | 75 |
| MIMAT0018997 | hsa-miR-4470 | 8 | __...... | 3 | 75 |
| MIMAT0018988 | hsa-miR-4464 | 3 | _......_ | 8 | 75 |
| MIMAT0018447 | hsa-miR-548aa | 8 | ......__ | 3 | 75 |
| MIMAT0018863 | tca-miR-3883-3p | 8 | _......_ | 3 | 75 |
| MIMAT0018689 | tca-miR-3829-3p | 3 | ......__ | 8 | 75 |
| MIMAT0018045 | vvi-miR3636-5p | 3 | _......_ | 8 | 75 |
| MIMAT0016789 | cin-miR-4178b-5p | 8 | __...... | 3 | 75 |
| MIMAT0016788 | cin-miR-4178a-5p | 7 | __...... | 2 | 75 |
| MIMAT0016716 | cin-miR-4123-3p | 7 | __...... | 2 | 75 |
| MIMAT0016703 | cin-miR-4113-5p | 3 | ......__ | 8 | 75 |
| MIMAT0016398 | cin-miR-15-3p | 2 | ......__ | 7 | 75 |
| MIMAT0016004 | ppy-miR-557 | 1 | __...... | 6 | 75 |
| MIMAT0015712 | ssc-miR-299 | 2 | ......__ | 7 | 75 |
| MIMAT0015525 | bmo-miR-3338-5p | 7 | __...... | 2 | 75 |
| MIMAT0022730 | hsa-miR-548t-3p | 8 | ......__ | 3 | 75 |
| MIMAT0014773 | api-miR-3036 | 3 | ......__ | 8 | 75 |
| MIMAT0014651 | tgu-miR-29b-2-5p | 1 | ......__ | 6 | 75 |
| MIMAT0031064 | tgu-miR-29b-1-5p | 2 | ......__ | 7 | 75 |
| MIMAT0014283 | aae-miR-2940-5p | 1 | ......__ | 6 | 75 |
| MIMAT0013974 | zma-miR159e-3p | 3 | ......__ | 8 | 75 |
| MIMAT0013815 | osa-miR2868 | 2 | ......__ | 7 | 75 |
| MIMAT0012874 | hvt-miR-H18-5p | 8 | _......_ | 3 | 75 |
| MIMAT0013577 | cte-miR-2721 | 2 | ......__ | 7 | 75 |
| MIMAT0013557 | cte-miR-2696 | 3 | _......_ | 8 | 75 |
| MIMAT0013468 | mtr-miR2661 | 3 | _......_ | 8 | 75 |
| MIMAT0013394 | mtr-miR2630v | 1 | ......__ | 6 | 75 |
| MIMAT0013393 | mtr-miR2630u | 1 | ......__ | 6 | 75 |
| MIMAT0013392 | mtr-miR2630t | 1 | ......__ | 6 | 75 |
| MIMAT0013391 | mtr-miR2630s | 1 | ......__ | 6 | 75 |
| MIMAT0013390 | mtr-miR2630r | 1 | ......__ | 6 | 75 |
| MIMAT0013389 | mtr-miR2630q | 1 | ......__ | 6 | 75 |
| MIMAT0013388 | mtr-miR2630p | 1 | ......__ | 6 | 75 |
| MIMAT0013387 | mtr-miR2630o | 1 | ......__ | 6 | 75 |
| MIMAT0013386 | mtr-miR2630n | 1 | ......__ | 6 | 75 |
| MIMAT0013385 | mtr-miR2630m | 1 | ......__ | 6 | 75 |
| MIMAT0013384 | mtr-miR2630l | 1 | ......__ | 6 | 75 |
| MIMAT0013383 | mtr-miR2630k | 1 | ......__ | 6 | 75 |
| MIMAT0013382 | mtr-miR2630j | 1 | ......__ | 6 | 75 |
| MIMAT0013381 | mtr-miR2630i | 1 | ......__ | 6 | 75 |
| MIMAT0013380 | mtr-miR2630h | 1 | ......__ | 6 | 75 |
| MIMAT0013379 | mtr-miR2630g | 1 | ......__ | 6 | 75 |
| MIMAT0013378 | mtr-miR2630f | 1 | ......__ | 6 | 75 |
| MIMAT0013377 | mtr-miR2630e | 1 | ......__ | 6 | 75 |
| MIMAT0013376 | mtr-miR2630d | 1 | ......__ | 6 | 75 |
| MIMAT0013375 | mtr-miR2630y | 1 | ......__ | 6 | 75 |
| MIMAT0013374 | mtr-miR2630x | 1 | ......__ | 6 | 75 |
| MIMAT0013373 | mtr-miR2630w | 1 | ......__ | 6 | 75 |
| MIMAT0013372 | mtr-miR2630c | 1 | ......__ | 6 | 75 |
| MIMAT0013371 | mtr-miR2630b | 1 | ......__ | 6 | 75 |
| MIMAT0013370 | mtr-miR2630a | 1 | ......__ | 6 | 75 |
| MIMAT0012408 | dps-miR-2568b-5p | 6 | __...... | 1 | 75 |
| MIMAT0012404 | dps-miR-2568a-5p | 6 | __...... | 1 | 75 |
| MIMAT0012011 | bta-miR-2437 | 3 | ......__ | 8 | 75 |
| MIMAT0011870 | bta-miR-2337 | 2 | ......__ | 7 | 75 |
| MIMAT0011812 | bta-miR-2301 | 2 | ......__ | 7 | 75 |
| MIMAT0011759 | osa-miR2275b | 3 | ......__ | 8 | 75 |
| MIMAT0011758 | osa-miR2275a | 3 | ......__ | 8 | 75 |
| MIMAT0019178 | tca-bantam-5p | 2 | ......__ | 7 | 75 |
| MIMAT0010083 | gma-miR2107 | 6 | _......_ | 1 | 75 |
| MIMAT0010061 | osa-miR2098-3p | 2 | _......_ | 7 | 75 |
| MIMAT0009729 | lgi-miR-1988 | 3 | ......__ | 8 | 75 |
| MIMAT0009324 | bta-miR-452 | 2 | __...... | 7 | 75 |
| MIMAT0008238 | ptr-miR-557 | 1 | __...... | 6 | 75 |
| MIMAT0015278 | bmo-bantam-5p | 2 | ......__ | 7 | 75 |
| MIMAT0007779 | osa-miR1857-5p | 1 | ......__ | 6 | 75 |
| MIMAT0006416 | mml-miR-548f | 8 | ......__ | 3 | 75 |
| MIMAT0015254 | cin-miR-92b-5p | 2 | _......_ | 7 | 75 |
| MIMAT0006808 | oan-miR-29b-5p | 2 | ......__ | 7 | 75 |
| MIMAT0004391 | cre-miR909.2 | 8 | __...... | 3 | 75 |
| MIMAT0026703 | mdo-miR-29b-1-5p | 3 | ......__ | 8 | 75 |
| MIMAT0003601 | xtr-miR-140 | 3 | ......__ | 8 | 75 |
| MIMAT0003221 | hsa-miR-557 | 1 | __...... | 6 | 75 |
| MIMAT0002255 | ptr-miR-140 | 3 | ......__ | 8 | 75 |
| MIMAT0002143 | ssc-miR-140-5p | 3 | ......__ | 8 | 75 |
| MIMAT0015185 | zma-miR166j-5p | 1 | _......_ | 6 | 75 |
| MIMAT0001637 | mmu-miR-452-5p | 2 | __...... | 7 | 75 |
| MIMAT0017189 | mghv-miR-M1-5-3p | 8 | __...... | 3 | 75 |
| MIMAT0001159 | gga-miR-140-5p | 3 | ......__ | 8 | 75 |
| MIMAT0022870 | osa-miR166k-5p | 1 | _......_ | 6 | 75 |
| MIMAT0004717 | rno-miR-29b-5p | 2 | ......__ | 7 | 75 |
| MIMAT0017063 | mmu-miR-29b-2-5p | 2 | ......__ | 7 | 75 |
| MIMAT0004523 | mmu-miR-29b-1-5p | 3 | ......__ | 8 | 75 |
| MIMAT0004515 | hsa-miR-29b-2-5p | 2 | ......__ | 7 | 75 |
| MIMAT0004514 | hsa-miR-29b-1-5p | 3 | ......__ | 8 | 75 |
| MIMAT0020770 | cel-miR-41-5p | 3 | ......__ | 8 | 75 |
