| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tggttttc | 8 | ||
| MIMAT0015442 | bmo-miR-3258 | 8 | ........ | 1 | 100 |
| MIMAT0007714 | gga-miR-1798-3p | 1 | ........ | 8 | 100 |
| MIMAT0036837 | oha-miR-218-1-3p | 2 | ......._ | 8 | 87 |
| MIMAT0035543 | ath-miR826b | 1 | ......._ | 7 | 87 |
| MIMAT0030786 | prd-miR-124-5p | 2 | _....... | 8 | 87 |
| MIMAT0030183 | bdi-miR7725b-3p.1 | 8 | _....... | 2 | 87 |
| MIMAT0028035 | mmu-miR-7065-3p | 2 | ......._ | 8 | 87 |
| MIMAT0024585 | bta-miR-2285j | 8 | ......._ | 2 | 87 |
| MIMAT0024583 | bta-miR-2285h | 7 | _....... | 1 | 87 |
| MIMAT0023390 | hco-miR-5917 | 7 | _....... | 1 | 87 |
| MIMAT0021038 | hsa-miR-548ap-3p | 8 | ......._ | 2 | 87 |
| MIMAT0018447 | hsa-miR-548aa | 8 | ......._ | 2 | 87 |
| MIMAT0016501 | cin-miR-4009a-5p | 1 | _....... | 7 | 87 |
| MIMAT0022730 | hsa-miR-548t-3p | 8 | ......._ | 2 | 87 |
| MIMAT0013815 | osa-miR2868 | 2 | ......._ | 8 | 87 |
| MIMAT0013577 | cte-miR-2721 | 2 | ......._ | 8 | 87 |
| MIMAT0013394 | mtr-miR2630v | 1 | ......._ | 7 | 87 |
| MIMAT0013393 | mtr-miR2630u | 1 | ......._ | 7 | 87 |
| MIMAT0013392 | mtr-miR2630t | 1 | ......._ | 7 | 87 |
| MIMAT0013391 | mtr-miR2630s | 1 | ......._ | 7 | 87 |
| MIMAT0013390 | mtr-miR2630r | 1 | ......._ | 7 | 87 |
| MIMAT0013389 | mtr-miR2630q | 1 | ......._ | 7 | 87 |
| MIMAT0013388 | mtr-miR2630p | 1 | ......._ | 7 | 87 |
| MIMAT0013387 | mtr-miR2630o | 1 | ......._ | 7 | 87 |
| MIMAT0013386 | mtr-miR2630n | 1 | ......._ | 7 | 87 |
| MIMAT0013385 | mtr-miR2630m | 1 | ......._ | 7 | 87 |
| MIMAT0013384 | mtr-miR2630l | 1 | ......._ | 7 | 87 |
| MIMAT0013383 | mtr-miR2630k | 1 | ......._ | 7 | 87 |
| MIMAT0013382 | mtr-miR2630j | 1 | ......._ | 7 | 87 |
| MIMAT0013381 | mtr-miR2630i | 1 | ......._ | 7 | 87 |
| MIMAT0013380 | mtr-miR2630h | 1 | ......._ | 7 | 87 |
| MIMAT0013379 | mtr-miR2630g | 1 | ......._ | 7 | 87 |
| MIMAT0013378 | mtr-miR2630f | 1 | ......._ | 7 | 87 |
| MIMAT0013377 | mtr-miR2630e | 1 | ......._ | 7 | 87 |
| MIMAT0013376 | mtr-miR2630d | 1 | ......._ | 7 | 87 |
| MIMAT0013375 | mtr-miR2630y | 1 | ......._ | 7 | 87 |
| MIMAT0013374 | mtr-miR2630x | 1 | ......._ | 7 | 87 |
| MIMAT0013373 | mtr-miR2630w | 1 | ......._ | 7 | 87 |
| MIMAT0013372 | mtr-miR2630c | 1 | ......._ | 7 | 87 |
| MIMAT0013371 | mtr-miR2630b | 1 | ......._ | 7 | 87 |
| MIMAT0013370 | mtr-miR2630a | 1 | ......._ | 7 | 87 |
| MIMAT0011812 | bta-miR-2301 | 2 | ......._ | 8 | 87 |
| MIMAT0011569 | crm-miR-81-5p | 2 | _....... | 8 | 87 |
| MIMAT0019178 | tca-bantam-5p | 2 | ......._ | 8 | 87 |
| MIMAT0015278 | bmo-bantam-5p | 2 | ......._ | 8 | 87 |
| MIMAT0007793 | osa-miR1860-5p | 8 | _....... | 2 | 87 |
| MIMAT0007779 | osa-miR1857-5p | 1 | ......._ | 7 | 87 |
| MIMAT0006416 | mml-miR-548f | 8 | ......._ | 2 | 87 |
| MIMAT0007094 | oan-miR-1422d-3p | 8 | _....... | 2 | 87 |
| MIMAT0006896 | oan-miR-1422k-3p | 8 | _....... | 2 | 87 |
| MIMAT0006892 | oan-miR-1422c-3p | 8 | _....... | 2 | 87 |
| MIMAT0006882 | oan-miR-1422e-3p | 8 | _....... | 2 | 87 |
| MIMAT0020323 | cel-miR-82-5p | 2 | _....... | 8 | 87 |
| MIMAT0015109 | cel-miR-81-5p | 2 | _....... | 8 | 87 |
| MIMAT0035027 | efu-miR-299 | 1 | ......a. | 8 | 87 |
| MIMAT0030206 | bdi-miR7735-5p | 1 | .t...... | 8 | 87 |
| MIMAT0028436 | mmu-miR-7234-5p | 1 | .t...... | 8 | 87 |
| MIMAT0024142 | ggo-miR-299 | 1 | ......a. | 8 | 87 |
| MIMAT0019251 | oar-miR-299-5p | 1 | ......a. | 8 | 87 |
| MIMAT0018946 | hsa-miR-548ad-3p | 8 | .c...... | 1 | 87 |
| MIMAT0015813 | ppy-miR-299-5p | 1 | ......a. | 8 | 87 |
| MIMAT0017711 | aly-miR3440-5p | 1 | ......c. | 8 | 87 |
| MIMAT0012801 | ptr-miR-299 | 1 | ......a. | 8 | 87 |
| MIMAT0009885 | cfa-miR-299 | 1 | ......a. | 8 | 87 |
| MIMAT0009352 | bta-miR-584 | 1 | ......g. | 8 | 87 |
| MIMAT0009274 | bta-miR-299 | 1 | ......a. | 8 | 87 |
| MIMAT0006255 | mml-miR-299-5p | 1 | ......a. | 8 | 87 |
| MIMAT0000901 | rno-miR-299a-5p | 1 | ......a. | 8 | 87 |
| MIMAT0002890 | hsa-miR-299-5p | 1 | ......a. | 8 | 87 |
| MIMAT0000377 | mmu-miR-299a-5p | 1 | ......a. | 8 | 87 |
| MIMAT0037227 | ata-miR2275c-3p | 3 | ......__ | 8 | 75 |
| MIMAT0036880 | oha-miR-29b-2-5p | 2 | ......__ | 7 | 75 |
| MIMAT0036878 | oha-miR-29b-1-5p | 2 | ......__ | 7 | 75 |
| MIMAT0036114 | chi-miR-29b-5p | 2 | ......__ | 7 | 75 |
| MIMAT0035800 | tae-miR7757-5p | 8 | _......_ | 3 | 75 |
| MIMAT0035777 | tae-miR2275-3p | 3 | ......__ | 8 | 75 |
| MIMAT0035733 | rno-miR-193b-5p | 3 | _......_ | 8 | 75 |
| MIMAT0035704 | hsa-miR-548bb-3p | 8 | _......_ | 3 | 75 |
| MIMAT0035535 | bdi-miR2275c | 3 | ......__ | 8 | 75 |
| MIMAT0035533 | bdi-miR2275a | 3 | ......__ | 8 | 75 |
| MIMAT0035510 | bdi-miR159c | 3 | ......__ | 8 | 75 |
| MIMAT0034629 | eca-miR-9084 | 2 | __...... | 7 | 75 |
| MIMAT0033198 | ppc-miR-8327-5p | 2 | _......_ | 7 | 75 |
| MIMAT0033093 | ppc-miR-8290-5p | 3 | ......__ | 8 | 75 |
| MIMAT0032663 | ssa-miR-551-5p | 7 | ......__ | 2 | 75 |
| MIMAT0032583 | ssa-miR-29a-5p | 2 | ......__ | 7 | 75 |
| MIMAT0031847 | cpa-miR8150 | 6 | _......_ | 1 | 75 |
| MIMAT0031377 | osa-miR5539b | 8 | __...... | 3 | 75 |
| MIMAT0031207 | stu-miR8030-3p | 8 | _......_ | 3 | 75 |
| MIMAT0030682 | prd-miR-7920-5p | 2 | __...... | 7 | 75 |
| MIMAT0030446 | bta-miR-2285ad | 6 | _......_ | 1 | 75 |
| MIMAT0030440 | bta-miR-2285ac | 6 | _......_ | 1 | 75 |
| MIMAT0030436 | bta-miR-2285ab | 6 | _......_ | 1 | 75 |
| MIMAT0030192 | bdi-miR7729b-5p | 2 | __...... | 7 | 75 |
| MIMAT0030190 | bdi-miR7729a-5p | 2 | __...... | 7 | 75 |
| MIMAT0031094 | bta-miR-2285u | 8 | _......_ | 3 | 75 |
| MIMAT0029944 | bta-miR-2285y | 6 | _......_ | 1 | 75 |
| MIMAT0029877 | mmu-miR-6715-3p | 8 | ......__ | 3 | 75 |
| MIMAT0029592 | cbr-miR-7588 | 6 | _......_ | 1 | 75 |
| MIMAT0029492 | ipu-miR-29c | 2 | ......__ | 7 | 75 |
| MIMAT0029308 | mes-miR2275 | 3 | ......__ | 8 | 75 |
| MIMAT0028769 | mdo-miR-15c-3p | 7 | ......__ | 2 | 75 |
| MIMAT0031047 | mdo-miR-29b-2-5p | 3 | ......__ | 8 | 75 |
| MIMAT0028396 | mmu-miR-7214-5p | 2 | __...... | 7 | 75 |
| MIMAT0028333 | mml-miR-548j-3p | 7 | _......_ | 2 | 75 |
| MIMAT0028196 | dev-miR-D21-5p | 1 | ......__ | 6 | 75 |
| MIMAT0027875 | mmu-miR-6986-3p | 1 | __...... | 6 | 75 |
| MIMAT0025841 | hsa-miR-6715a-3p | 8 | ......__ | 3 | 75 |
| MIMAT0025658 | gga-miR-6575-3p | 3 | __...... | 8 | 75 |
| MIMAT0025531 | bta-miR-2285n | 7 | _......_ | 2 | 75 |
| MIMAT0025453 | hsa-miR-548ay-3p | 7 | _......_ | 2 | 75 |
| MIMAT0025325 | pde-miR159 | 3 | ......__ | 8 | 75 |
| MIMAT0027337 | ptc-miR6468-5p | 1 | __...... | 6 | 75 |
| MIMAT0025087 | mmu-miR-6344 | 1 | __...... | 6 | 75 |
| MIMAT0025081 | mmu-miR-6338 | 2 | ......__ | 7 | 75 |
| MIMAT0024587 | bta-miR-2285l | 6 | _......_ | 1 | 75 |
| MIMAT0024586 | bta-miR-2285k | 6 | _......_ | 1 | 75 |
| MIMAT0024584 | bta-miR-2285i | 6 | _......_ | 1 | 75 |
| MIMAT0024581 | bta-miR-2285f | 6 | _......_ | 1 | 75 |
| MIMAT0024538 | cca-miR6105a | 8 | __...... | 3 | 75 |
| MIMAT0024260 | ggo-miR-548b | 8 | _......_ | 3 | 75 |
| MIMAT0023971 | cgr-miR-497-3p | 7 | ......__ | 2 | 75 |
| MIMAT0023885 | cgr-miR-29b-5p | 3 | ......__ | 8 | 75 |
| MIMAT0023520 | ath-miR5997 | 8 | ......__ | 3 | 75 |
| MIMAT0023113 | tur-miR-263a-3p | 1 | ......__ | 6 | 75 |
| MIMAT0022278 | hsa-miR-548at-3p | 7 | _......_ | 2 | 75 |
| MIMAT0022268 | hsa-miR-548as-3p | 7 | _......_ | 2 | 75 |
| MIMAT0022218 | mtr-miR2592bn-3p | 7 | __...... | 2 | 75 |
| MIMAT0022214 | mtr-miR2592bm-3p | 7 | __...... | 2 | 75 |
| MIMAT0022175 | osa-miR5539a | 8 | __...... | 3 | 75 |
| MIMAT0021560 | asu-miR-5351-5p | 3 | _......_ | 8 | 75 |
| MIMAT0021513 | asu-miR-279b-5p | 3 | ......__ | 8 | 75 |
| MIMAT0019578 | pma-miR-4547-5p | 2 | __...... | 7 | 75 |
| MIMAT0019530 | pma-miR-218a-3p | 2 | ......__ | 7 | 75 |
| MIMAT0019420 | pma-miR-29d-5p | 2 | ......__ | 7 | 75 |
| MIMAT0019265 | oar-miR-329a-5p | 3 | _......_ | 8 | 75 |
| MIMAT0019263 | oar-miR-329b-5p | 3 | _......_ | 8 | 75 |
| MIMAT0018938 | hsa-miR-548ac | 8 | _......_ | 3 | 75 |
| MIMAT0018446 | hsa-miR-548z | 8 | _......_ | 3 | 75 |
| MIMAT0018890 | tca-miR-3894-5p | 1 | _......_ | 6 | 75 |
| MIMAT0018869 | tca-miR-3885-3p | 2 | _......_ | 7 | 75 |
| MIMAT0018689 | tca-miR-3829-3p | 3 | ......__ | 8 | 75 |
| MIMAT0018678 | tca-miR-3825-5p | 2 | __...... | 7 | 75 |
| MIMAT0018596 | ame-miR-3729 | 2 | __...... | 7 | 75 |
| MIMAT0016703 | cin-miR-4113-5p | 3 | ......__ | 8 | 75 |
| MIMAT0016492 | cin-miR-1502c-3p | 3 | _......_ | 8 | 75 |
| MIMAT0016398 | cin-miR-15-3p | 2 | ......__ | 7 | 75 |
| MIMAT0015712 | ssc-miR-299 | 2 | ......__ | 7 | 75 |
| MIMAT0015513 | bmo-miR-3326 | 3 | _......_ | 8 | 75 |
| MIMAT0014773 | api-miR-3036 | 3 | ......__ | 8 | 75 |
| MIMAT0014651 | tgu-miR-29b-2-5p | 1 | ......__ | 6 | 75 |
| MIMAT0031064 | tgu-miR-29b-1-5p | 2 | ......__ | 7 | 75 |
| MIMAT0014420 | cqu-bantam-5p | 3 | _......_ | 8 | 75 |
| MIMAT0014283 | aae-miR-2940-5p | 1 | ......__ | 6 | 75 |
| MIMAT0014218 | aae-bantam-5p | 3 | _......_ | 8 | 75 |
| MIMAT0013974 | zma-miR159e-3p | 3 | ......__ | 8 | 75 |
| MIMAT0013002 | eca-miR-703 | 6 | _......_ | 1 | 75 |
| MIMAT0012930 | eca-miR-684 | 2 | __...... | 7 | 75 |
| MIMAT0012804 | ptr-miR-570 | 7 | __...... | 2 | 75 |
| MIMAT0026946 | mdo-miR-497-3p | 7 | ......__ | 2 | 75 |
| MIMAT0013369 | mtr-miR2629g | 2 | __...... | 7 | 75 |
| MIMAT0013368 | mtr-miR2629f | 2 | __...... | 7 | 75 |
| MIMAT0013367 | mtr-miR2629c | 2 | __...... | 7 | 75 |
| MIMAT0013366 | mtr-miR2629b | 2 | __...... | 7 | 75 |
| MIMAT0013365 | mtr-miR2629e | 2 | __...... | 7 | 75 |
| MIMAT0013364 | mtr-miR2629d | 2 | __...... | 7 | 75 |
| MIMAT0013363 | mtr-miR2629a | 2 | __...... | 7 | 75 |
| MIMAT0012011 | bta-miR-2437 | 3 | ......__ | 8 | 75 |
| MIMAT0011874 | bta-miR-1814a | 2 | _......_ | 7 | 75 |
| MIMAT0011870 | bta-miR-2337 | 2 | ......__ | 7 | 75 |
| MIMAT0011828 | bta-miR-2312 | 6 | _......_ | 1 | 75 |
| MIMAT0011823 | bta-miR-1603 | 2 | ......__ | 7 | 75 |
| MIMAT0011759 | osa-miR2275b | 3 | ......__ | 8 | 75 |
| MIMAT0011758 | osa-miR2275a | 3 | ......__ | 8 | 75 |
| MIMAT0013776 | sme-miR-2160-2-3p | 1 | _......_ | 6 | 75 |
| MIMAT0011406 | sme-miR-2147d-5p | 8 | __...... | 3 | 75 |
| MIMAT0011393 | sme-miR-2156b-5p | 3 | _......_ | 8 | 75 |
| MIMAT0011270 | sme-miR-2147c | 8 | __...... | 3 | 75 |
| MIMAT0011265 | sme-miR-2147b | 8 | __...... | 3 | 75 |
| MIMAT0009729 | lgi-miR-1988 | 3 | ......__ | 8 | 75 |
| MIMAT0032086 | dvi-bantam-5p | 3 | _......_ | 8 | 75 |
| MIMAT0011148 | xla-miR-703 | 6 | _......_ | 1 | 75 |
| MIMAT0006415 | mml-miR-548e | 7 | _......_ | 2 | 75 |
| MIMAT0006414 | mml-miR-548d-3p | 8 | _......_ | 3 | 75 |
| MIMAT0006412 | mml-miR-548c | 7 | _......_ | 2 | 75 |
| MIMAT0006411 | mml-miR-548b | 8 | _......_ | 3 | 75 |
| MIMAT0026887 | mml-miR-497-3p | 7 | ......__ | 2 | 75 |
| MIMAT0031107 | mml-miR-329-2-5p | 3 | _......_ | 8 | 75 |
| MIMAT0026852 | mml-miR-329-1-5p | 3 | _......_ | 8 | 75 |
| MIMAT0007512 | gga-miR-1815 | 3 | _......_ | 8 | 75 |
| MIMAT0007399 | hsa-miR-1537-3p | 6 | _......_ | 1 | 75 |
| MIMAT0007317 | oan-miR-1422q-3p | 6 | __...... | 1 | 75 |
| MIMAT0006862 | oan-miR-1339-3p | 7 | __...... | 2 | 75 |
| MIMAT0006808 | oan-miR-29b-5p | 2 | ......__ | 7 | 75 |
| MIMAT0022723 | hsa-miR-548h-3p | 8 | _......_ | 3 | 75 |
| MIMAT0004458 | mdv2-miR-M18-5p | 2 | __...... | 7 | 75 |
| MIMAT0026703 | mdo-miR-29b-1-5p | 3 | ......__ | 8 | 75 |
| MIMAT0020352 | cel-miR-794-3p | 7 | __...... | 2 | 75 |
| MIMAT0012085 | sme-bantam-b-5p | 3 | _......_ | 8 | 75 |
| MIMAT0003601 | xtr-miR-140 | 3 | ......__ | 8 | 75 |
| MIMAT0003493 | mmu-miR-703 | 6 | _......_ | 1 | 75 |
| MIMAT0003462 | mmu-miR-684 | 2 | __...... | 7 | 75 |
| MIMAT0017247 | mmu-miR-497a-3p | 7 | ......__ | 2 | 75 |
| MIMAT0017230 | rno-miR-497-3p | 8 | ......__ | 3 | 75 |
| MIMAT0003323 | hsa-miR-548d-3p | 8 | _......_ | 3 | 75 |
| MIMAT0003235 | hsa-miR-570-3p | 7 | __...... | 2 | 75 |
| MIMAT0004768 | hsa-miR-497-3p | 7 | ......__ | 2 | 75 |
| MIMAT0002255 | ptr-miR-140 | 3 | ......__ | 8 | 75 |
| MIMAT0002143 | ssc-miR-140-5p | 3 | ......__ | 8 | 75 |
| MIMAT0026555 | hsa-miR-329-5p | 3 | _......_ | 8 | 75 |
| MIMAT0001159 | gga-miR-140-5p | 3 | ......__ | 8 | 75 |
| MIMAT0004717 | rno-miR-29b-5p | 2 | ......__ | 7 | 75 |
| MIMAT0017063 | mmu-miR-29b-2-5p | 2 | ......__ | 7 | 75 |
| MIMAT0020823 | dme-bantam-5p | 3 | _......_ | 8 | 75 |
| MIMAT0004523 | mmu-miR-29b-1-5p | 3 | ......__ | 8 | 75 |
| MIMAT0004515 | hsa-miR-29b-2-5p | 2 | ......__ | 7 | 75 |
| MIMAT0004514 | hsa-miR-29b-1-5p | 3 | ......__ | 8 | 75 |
| MIMAT0020770 | cel-miR-41-5p | 3 | ......__ | 8 | 75 |
