| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tgtgctgg | 8 | ||
| MIMAT0034460 | eca-miR-8932 | 1 | ........ | 8 | 100 |
| MIMAT0011956 | bta-miR-2400 | 8 | ........ | 1 | 100 |
| MIMAT0010151 | mcv-miR-M1-3p | 1 | ........ | 8 | 100 |
| MIMAT0034294 | cfa-miR-8804 | 8 | _....... | 2 | 87 |
| MIMAT0032772 | ath-miR8173 | 2 | ......._ | 8 | 87 |
| MIMAT0032747 | ssa-miR-8160-3p | 7 | _....... | 1 | 87 |
| MIMAT0029954 | osa-miR1437b-3p | 1 | _....... | 7 | 87 |
| MIMAT0029098 | gga-miR-7472-5p | 2 | ......._ | 8 | 87 |
| MIMAT0027955 | mmu-miR-7025-3p | 7 | ......._ | 1 | 87 |
| MIMAT0018828 | tca-miR-3868-5p | 8 | _....... | 2 | 87 |
| MIMAT0016524 | cin-miR-4017-5p | 1 | ......._ | 7 | 87 |
| MIMAT0031158 | hbv-miR-B20-3p | 1 | _....... | 7 | 87 |
| MIMAT0019141 | bfl-miR-31-3p | 2 | ......._ | 8 | 87 |
| MIMAT0007240 | oan-miR-1419b-5p | 2 | _....... | 8 | 87 |
| MIMAT0005264 | smo-miR1107 | 2 | _....... | 8 | 87 |
| MIMAT0035863 | bra-miR6032-3p | 1 | .c...... | 8 | 87 |
| MIMAT0018717 | tca-miR-316-3p | 8 | .c...... | 1 | 87 |
| MIMAT0016074 | ppy-miR-636 | 1 | ......t. | 8 | 87 |
| MIMAT0006479 | mml-miR-636 | 1 | ......t. | 8 | 87 |
| MIMAT0003306 | hsa-miR-636 | 1 | ......t. | 8 | 87 |
| MIMAT0026618 | hsa-miR-585-5p | 8 | ......a. | 1 | 87 |
| MIMAT0037148 | ata-miR172b-5p | 7 | _......_ | 2 | 75 |
| MIMAT0036904 | oha-miR-338-3p | 7 | __...... | 2 | 75 |
| MIMAT0036836 | oha-miR-218-5p | 2 | ......__ | 7 | 75 |
| MIMAT0036514 | tch-miR-218-5p | 2 | ......__ | 7 | 75 |
| MIMAT0036259 | chi-miR-497-5p | 8 | _......_ | 3 | 75 |
| MIMAT0036150 | chi-miR-338-3p | 7 | __...... | 2 | 75 |
| MIMAT0036066 | chi-miR-218 | 2 | ......__ | 7 | 75 |
| MIMAT0036034 | chi-miR-197-5p | 3 | ......__ | 8 | 75 |
| MIMAT0035765 | tae-miR9657a-3p | 1 | ......__ | 6 | 75 |
| MIMAT0035068 | efu-miR-218b | 2 | ......__ | 7 | 75 |
| MIMAT0035036 | efu-miR-218a | 2 | ......__ | 7 | 75 |
| MIMAT0034895 | efu-miR-9265 | 8 | ......__ | 3 | 75 |
| MIMAT0034886 | efu-miR-9189c | 1 | ......__ | 6 | 75 |
| MIMAT0034854 | efu-miR-9238 | 8 | __...... | 3 | 75 |
| MIMAT0034762 | eca-miR-9181 | 2 | __...... | 7 | 75 |
| MIMAT0034746 | eca-miR-9168 | 6 | ......__ | 1 | 75 |
| MIMAT0034658 | eca-miR-3065 | 7 | _......_ | 2 | 75 |
| MIMAT0034603 | eca-miR-3548 | 6 | _......_ | 1 | 75 |
| MIMAT0034516 | eca-miR-8979 | 1 | __...... | 6 | 75 |
| MIMAT0034457 | eca-miR-8929 | 1 | __...... | 6 | 75 |
| MIMAT0034443 | eca-miR-8915 | 6 | _......_ | 1 | 75 |
| MIMAT0034389 | cfa-miR-8885 | 3 | ......__ | 8 | 75 |
| MIMAT0032766 | ath-miR8168 | 3 | _......_ | 8 | 75 |
| MIMAT0032736 | ssa-miR-8157-5p | 7 | ......__ | 2 | 75 |
| MIMAT0032615 | ssa-miR-338a-3p | 7 | __...... | 2 | 75 |
| MIMAT0032524 | ssa-miR-218-5p | 2 | ......__ | 7 | 75 |
| MIMAT0031667 | bbe-miR-31-3p | 3 | ......__ | 8 | 75 |
| MIMAT0031286 | stu-miR172b-5p | 7 | _......_ | 2 | 75 |
| MIMAT0030991 | hsa-miR-8064 | 6 | ......__ | 1 | 75 |
| MIMAT0030973 | stu-miR164-3p | 3 | ......__ | 8 | 75 |
| MIMAT0030679 | prd-miR-7919-3p | 6 | _......_ | 1 | 75 |
| MIMAT0030045 | oar-miR-218a | 2 | ......__ | 7 | 75 |
| MIMAT0032227 | lva-miR-2006-3p | 7 | ......__ | 2 | 75 |
| MIMAT0032180 | pmi-miR-2006-3p | 7 | ......__ | 2 | 75 |
| MIMAT0029538 | ipu-miR-16c | 6 | __...... | 1 | 75 |
| MIMAT0029502 | ipu-miR-338 | 7 | __...... | 2 | 75 |
| MIMAT0029473 | ipu-miR-218b | 2 | ......__ | 7 | 75 |
| MIMAT0029472 | ipu-miR-218a | 2 | ......__ | 7 | 75 |
| MIMAT0028983 | oan-miR-7417-3p | 3 | ......__ | 8 | 75 |
| MIMAT0028819 | mdo-miR-7381-3p | 2 | __...... | 7 | 75 |
| MIMAT0028768 | mdo-miR-15c-5p | 8 | _......_ | 3 | 75 |
| MIMAT0028710 | mdo-miR-7349-5p | 1 | __...... | 6 | 75 |
| MIMAT0028346 | mml-miR-7193-5p | 3 | _......_ | 8 | 75 |
| MIMAT0028336 | mml-miR-7189-5p | 3 | _......_ | 8 | 75 |
| MIMAT0028225 | hsa-miR-7157-3p | 3 | ......__ | 8 | 75 |
| MIMAT0028151 | ssc-miR-7138-5p | 8 | __...... | 3 | 75 |
| MIMAT0026303 | ccr-miR-457b | 8 | _......_ | 3 | 75 |
| MIMAT0026302 | ccr-miR-457a | 8 | _......_ | 3 | 75 |
| MIMAT0026291 | ccr-miR-338 | 7 | __...... | 2 | 75 |
| MIMAT0026272 | ccr-miR-218b | 2 | ......__ | 7 | 75 |
| MIMAT0026271 | ccr-miR-218a | 2 | ......__ | 7 | 75 |
| MIMAT0028081 | mmu-miR-7087-3p | 1 | __...... | 6 | 75 |
| MIMAT0027957 | mmu-miR-7026-3p | 1 | ......__ | 6 | 75 |
| MIMAT0027953 | mmu-miR-7024-3p | 6 | __...... | 1 | 75 |
| MIMAT0027921 | mmu-miR-7008-3p | 1 | ......__ | 6 | 75 |
| MIMAT0027907 | mmu-miR-7002-3p | 2 | ......__ | 7 | 75 |
| MIMAT0027831 | mmu-miR-6965-3p | 3 | ......__ | 8 | 75 |
| MIMAT0027643 | hsa-miR-6871-3p | 6 | _......_ | 1 | 75 |
| MIMAT0027376 | hsa-miR-6737-3p | 3 | ......__ | 8 | 75 |
| MIMAT0025755 | gga-miR-6654-3p | 7 | _......_ | 2 | 75 |
| MIMAT0025750 | gga-miR-6650-5p | 8 | __...... | 3 | 75 |
| MIMAT0025749 | gga-miR-6649-3p | 1 | __...... | 6 | 75 |
| MIMAT0025738 | gga-miR-6641-3p | 2 | __...... | 7 | 75 |
| MIMAT0025706 | gga-miR-6611-5p | 1 | __...... | 6 | 75 |
| MIMAT0025686 | gga-miR-6593-5p | 1 | __...... | 6 | 75 |
| MIMAT0025680 | gga-miR-6588-3p | 2 | __...... | 7 | 75 |
| MIMAT0025679 | gga-miR-6587-3p | 1 | __...... | 6 | 75 |
| MIMAT0025636 | gga-miR-6565-3p | 3 | ......__ | 8 | 75 |
| MIMAT0025371 | ssc-miR-218 | 2 | ......__ | 7 | 75 |
| MIMAT0025249 | ptc-miR6446 | 2 | __...... | 7 | 75 |
| MIMAT0027269 | pgi-miR6143b-3p | 6 | _......_ | 1 | 75 |
| MIMAT0024233 | ggo-miR-1287 | 1 | __...... | 6 | 75 |
| MIMAT0024125 | ggo-miR-338 | 7 | __...... | 2 | 75 |
| MIMAT0023918 | cgr-miR-338 | 7 | __...... | 2 | 75 |
| MIMAT0023855 | cgr-miR-218a | 2 | ......__ | 7 | 75 |
| MIMAT0023688 | ame-miR-6047b | 6 | ......__ | 1 | 75 |
| MIMAT0023480 | hco-miR-5973 | 3 | __...... | 8 | 75 |
| MIMAT0022818 | sha-miR-338 | 7 | __...... | 2 | 75 |
| MIMAT0022609 | ola-miR-218b | 2 | ......__ | 7 | 75 |
| MIMAT0022580 | ola-miR-338-3p | 7 | __...... | 2 | 75 |
| MIMAT0022529 | ola-miR-218a | 2 | ......__ | 7 | 75 |
| MIMAT0023022 | bra-miR5723 | 3 | ......__ | 8 | 75 |
| MIMAT0022325 | cin-miR-5601-5p | 2 | ......__ | 7 | 75 |
| MIMAT0022273 | hsa-miR-5580-5p | 1 | __...... | 6 | 75 |
| MIMAT0022686 | hvsa-miR-HSUR2-5p | 3 | ......__ | 8 | 75 |
| MIMAT0021953 | aca-miR-383-3p | 8 | _......_ | 3 | 75 |
| MIMAT0021938 | aca-miR-338-3p | 7 | __...... | 2 | 75 |
| MIMAT0021880 | aca-miR-218-5p | 2 | ......__ | 7 | 75 |
| MIMAT0021656 | gma-miR172g | 7 | _......_ | 2 | 75 |
| MIMAT0021378 | isc-miR-5308 | 3 | ......__ | 8 | 75 |
| MIMAT0027061 | bdi-miR172a-5p | 7 | _......_ | 2 | 75 |
| MIMAT0020611 | mmu-miR-5104 | 2 | ......__ | 7 | 75 |
| MIMAT0020589 | ssc-miR-218b | 2 | ......__ | 7 | 75 |
| MIMAT0021040 | hsa-miR-5008-3p | 3 | ......__ | 8 | 75 |
| MIMAT0021004 | gma-miR862a | 1 | __...... | 6 | 75 |
| MIMAT0020514 | dme-miR-4908-3p | 2 | ......__ | 7 | 75 |
| MIMAT0020048 | sko-miR-2006-3p | 7 | ......__ | 2 | 75 |
| MIMAT0019853 | hsa-miR-4731-5p | 1 | __...... | 6 | 75 |
| MIMAT0019600 | pma-miR-4568 | 7 | ......__ | 2 | 75 |
| MIMAT0019595 | pma-miR-4563 | 1 | __...... | 6 | 75 |
| MIMAT0019590 | pma-miR-4558 | 1 | __...... | 6 | 75 |
| MIMAT0019531 | pma-miR-218b | 2 | ......__ | 7 | 75 |
| MIMAT0019529 | pma-miR-218a-5p | 2 | ......__ | 7 | 75 |
| MIMAT0019069 | hsa-miR-4530 | 7 | __...... | 2 | 75 |
| MIMAT0018815 | tca-miR-3865-3p | 8 | ......__ | 3 | 75 |
| MIMAT0018549 | ame-miR-3773 | 8 | ......__ | 3 | 75 |
| MIMAT0018121 | hsa-miR-3692-5p | 3 | __...... | 8 | 75 |
| MIMAT0018013 | vvi-miR3625-5p | 8 | __...... | 3 | 75 |
| MIMAT0022961 | ssc-miR-218-5p | 2 | ......__ | 7 | 75 |
| MIMAT0016555 | cin-miR-4033-5p | 8 | ......__ | 3 | 75 |
| MIMAT0017890 | rno-miR-3590-3p | 7 | ......__ | 2 | 75 |
| MIMAT0017861 | rno-miR-3575 | 3 | __...... | 8 | 75 |
| MIMAT0017840 | rno-miR-3065-3p | 7 | _......_ | 2 | 75 |
| MIMAT0017806 | rno-miR-3548 | 6 | _......_ | 1 | 75 |
| MIMAT0016210 | ppy-miR-1287 | 1 | __...... | 6 | 75 |
| MIMAT0015937 | ppy-miR-512-3p | 3 | _......_ | 8 | 75 |
| MIMAT0015841 | ppy-miR-338-3p | 7 | __...... | 2 | 75 |
| MIMAT0015713 | ssc-miR-338 | 7 | __...... | 2 | 75 |
| MIMAT0017529 | aly-miR172e-5p | 7 | _......_ | 2 | 75 |
| MIMAT0017523 | aly-miR172b-5p | 7 | _......_ | 2 | 75 |
| MIMAT0015378 | hsa-miR-3065-3p | 7 | _......_ | 2 | 75 |
| MIMAT0014865 | mmu-miR-3078-3p | 2 | __...... | 7 | 75 |
| MIMAT0014837 | mmu-miR-3065-3p | 7 | _......_ | 2 | 75 |
| MIMAT0014542 | tgu-miR-338-3p | 7 | __...... | 2 | 75 |
| MIMAT0014522 | tgu-miR-218-5p | 2 | ......__ | 7 | 75 |
| MIMAT0014456 | tgu-miR-2958 | 1 | __...... | 6 | 75 |
| MIMAT0014362 | cqu-miR-988-5p | 3 | ......__ | 8 | 75 |
| MIMAT0014280 | aae-miR-988-5p | 2 | ......__ | 7 | 75 |
| MIMAT0013036 | eca-miR-338-3p | 7 | __...... | 2 | 75 |
| MIMAT0012928 | eca-miR-218 | 2 | ......__ | 7 | 75 |
| MIMAT0017369 | rno-miR-667-5p | 3 | _......_ | 8 | 75 |
| MIMAT0012599 | bmo-miR-2723 | 6 | __...... | 1 | 75 |
| MIMAT0012458 | dsi-miR-1000-3p | 2 | __...... | 7 | 75 |
| MIMAT0012266 | dps-miR-1000-3p | 2 | __...... | 7 | 75 |
| MIMAT0012037 | bta-miR-2455 | 3 | ......__ | 8 | 75 |
| MIMAT0012033 | bta-miR-2452 | 1 | _......_ | 6 | 75 |
| MIMAT0011445 | cel-miR-2215-5p | 7 | _......_ | 2 | 75 |
| MIMAT0011256 | sme-miR-2162-5p | 1 | ......__ | 6 | 75 |
| MIMAT0010167 | bra-miR172b-5p | 7 | _......_ | 2 | 75 |
| MIMAT0010049 | osa-miR2092-3p | 7 | __...... | 2 | 75 |
| MIMAT0009971 | bta-miR-1287 | 1 | __...... | 6 | 75 |
| MIMAT0009747 | spu-miR-2006 | 7 | ......__ | 2 | 75 |
| MIMAT0009292 | bta-miR-338 | 7 | __...... | 2 | 75 |
| MIMAT0008291 | ptr-miR-634 | 8 | __...... | 3 | 75 |
| MIMAT0008180 | ptr-miR-512 | 3 | _......_ | 8 | 75 |
| MIMAT0008106 | ptr-miR-338 | 7 | __...... | 2 | 75 |
| MIMAT0006739 | cfa-miR-338 | 7 | __...... | 2 | 75 |
| MIMAT0006672 | cfa-miR-218 | 2 | ......__ | 7 | 75 |
| MIMAT0006372 | mml-miR-512-3p | 3 | _......_ | 8 | 75 |
| MIMAT0006278 | mml-miR-338-3p | 7 | __...... | 2 | 75 |
| MIMAT0007661 | gga-miR-1754-5p | 3 | _......_ | 8 | 75 |
| MIMAT0007640 | gga-miR-1737 | 6 | _......_ | 1 | 75 |
| MIMAT0007587 | gga-miR-1695 | 7 | ......__ | 2 | 75 |
| MIMAT0007577 | gga-miR-1687-3p | 2 | __...... | 7 | 75 |
| MIMAT0007533 | gga-miR-1654 | 2 | __...... | 7 | 75 |
| MIMAT0007262 | oan-miR-1419e-5p | 2 | __...... | 7 | 75 |
| MIMAT0006815 | oan-miR-218-5p | 2 | ......__ | 7 | 75 |
| MIMAT0005878 | hsa-miR-1287-5p | 1 | __...... | 6 | 75 |
| MIMAT0005399 | cre-miR1153-5p.2 | 2 | _......_ | 7 | 75 |
| MIMAT0005158 | ppt-miR1045 | 3 | _......_ | 8 | 75 |
| MIMAT0020900 | dme-miR-1000-3p | 2 | __...... | 7 | 75 |
| MIMAT0004967 | cre-miR909.1 | 1 | __...... | 6 | 75 |
| MIMAT0004250 | ath-miR832-5p | 1 | __...... | 6 | 75 |
| MIMAT0004136 | mdo-miR-338 | 7 | __...... | 2 | 75 |
| MIMAT0004133 | mdo-miR-218-5p | 2 | ......__ | 7 | 75 |
| MIMAT0032015 | cel-miR-785-5p | 6 | ......__ | 1 | 75 |
| MIMAT0003798 | bta-miR-218 | 2 | ......__ | 7 | 75 |
| MIMAT0003665 | xtr-miR-338 | 7 | __...... | 2 | 75 |
| MIMAT0003660 | xtr-miR-93b | 3 | _......_ | 8 | 75 |
| MIMAT0003631 | xtr-miR-218 | 2 | ......__ | 7 | 75 |
| MIMAT0017239 | mmu-miR-667-5p | 3 | _......_ | 8 | 75 |
| MIMAT0003304 | hsa-miR-634 | 8 | __...... | 3 | 75 |
| MIMAT0003008 | tni-miR-338 | 7 | __...... | 2 | 75 |
| MIMAT0003007 | fru-miR-338 | 7 | __...... | 2 | 75 |
| MIMAT0002994 | tni-miR-218a | 2 | ......__ | 7 | 75 |
| MIMAT0002993 | fru-miR-218a | 2 | ......__ | 7 | 75 |
| MIMAT0002986 | tni-miR-218b | 2 | ......__ | 7 | 75 |
| MIMAT0002985 | fru-miR-218b | 2 | ......__ | 7 | 75 |
| MIMAT0022926 | osa-miR528-3p | 3 | ......__ | 8 | 75 |
| MIMAT0002823 | hsa-miR-512-3p | 3 | _......_ | 8 | 75 |
| MIMAT0002574 | mml-miR-218-5p | 2 | ......__ | 7 | 75 |
| MIMAT0002573 | mne-miR-218 | 2 | ......__ | 7 | 75 |
| MIMAT0002572 | lla-miR-218 | 2 | ......__ | 7 | 75 |
| MIMAT0002571 | sla-miR-218 | 2 | ......__ | 7 | 75 |
| MIMAT0002570 | ptr-miR-218 | 2 | ......__ | 7 | 75 |
| MIMAT0002569 | ppy-miR-218 | 2 | ......__ | 7 | 75 |
| MIMAT0002568 | lca-miR-218 | 2 | ......__ | 7 | 75 |
| MIMAT0002567 | ppa-miR-218 | 2 | ......__ | 7 | 75 |
| MIMAT0002566 | age-miR-218 | 2 | ......__ | 7 | 75 |
| MIMAT0002565 | ggo-miR-218 | 2 | ......__ | 7 | 75 |
| MIMAT0002188 | kshv-miR-K12-6-5p | 6 | __...... | 1 | 75 |
| MIMAT0015214 | kshv-miR-K12-1-3p | 7 | _......_ | 2 | 75 |
| MIMAT0001873 | dre-miR-338 | 7 | __...... | 2 | 75 |
| MIMAT0001869 | dre-miR-218b | 2 | ......__ | 7 | 75 |
| MIMAT0001868 | dre-miR-218a | 2 | ......__ | 7 | 75 |
| MIMAT0015158 | zma-miR172c-5p | 6 | _......_ | 1 | 75 |
| MIMAT0015157 | zma-miR172b-5p | 6 | _......_ | 1 | 75 |
| MIMAT0015156 | zma-miR172d-5p | 6 | _......_ | 1 | 75 |
| MIMAT0001144 | gga-miR-218-5p | 2 | ......__ | 7 | 75 |
| MIMAT0022885 | osa-miR172d-5p | 7 | _......_ | 2 | 75 |
| MIMAT0031918 | ath-miR172e-5p | 7 | _......_ | 2 | 75 |
| MIMAT0000888 | rno-miR-218a-5p | 2 | ......__ | 7 | 75 |
| MIMAT0000763 | hsa-miR-338-3p | 7 | __...... | 2 | 75 |
| MIMAT0026485 | hsa-miR-383-3p | 7 | _......_ | 2 | 75 |
| MIMAT0000663 | mmu-miR-218-5p | 2 | ......__ | 7 | 75 |
| MIMAT0000582 | mmu-miR-338-3p | 7 | __...... | 2 | 75 |
| MIMAT0000581 | rno-miR-338-3p | 7 | __...... | 2 | 75 |
| MIMAT0000275 | hsa-miR-218-5p | 2 | ......__ | 7 | 75 |
| MIMAT0000204 | ath-miR172b-5p | 7 | _......_ | 2 | 75 |
| MIMAT0020303 | cel-miR-35-5p | 1 | __...... | 6 | 75 |
