| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tgtgtaa | 7 | ||
| MIMAT0020078 | spu-miR-4855 | 1 | ....... | 7 | 100 |
| MIMAT0020072 | spu-miR-4849 | 1 | ....... | 7 | 100 |
| MIMAT0019754 | hsa-miR-4672 | 7 | ....... | 1 | 100 |
| MIMAT0018357 | hsa-miR-3941 | 7 | ....... | 1 | 100 |
| MIMAT0018793 | tca-miR-3860-3p | 2 | ....... | 8 | 100 |
| MIMAT0009758 | nve-miR-2024a-3p | 7 | ....... | 1 | 100 |
| MIMAT0015247 | cin-let-7a-1-3p | 1 | ....... | 7 | 100 |
| MIMAT0037033 | ssc-miR-9815-3p | 2 | _...... | 7 | 85 |
| MIMAT0036071 | chi-miR-223-5p | 1 | ......_ | 6 | 85 |
| MIMAT0035418 | nve-miR-9457 | 6 | ......_ | 1 | 85 |
| MIMAT0034597 | eca-miR-9053 | 6 | ......_ | 1 | 85 |
| MIMAT0033295 | ppc-miR-8252b-3p | 6 | ......_ | 1 | 85 |
| MIMAT0030881 | stu-miR7995 | 6 | _...... | 1 | 85 |
| MIMAT0030165 | bdi-miR7720-3p | 8 | _...... | 3 | 85 |
| MIMAT0029672 | cbn-miR-7630 | 6 | _...... | 1 | 85 |
| MIMAT0029025 | oan-miR-7435-3p | 8 | _...... | 3 | 85 |
| MIMAT0028936 | mdo-miR-7398i-5p | 1 | ......_ | 6 | 85 |
| MIMAT0028928 | mdo-miR-7398j-5p | 1 | ......_ | 6 | 85 |
| MIMAT0028922 | mdo-miR-7398d-5p | 1 | ......_ | 6 | 85 |
| MIMAT0028920 | mdo-miR-7398q-5p | 1 | ......_ | 6 | 85 |
| MIMAT0031054 | mdo-miR-7398a-5-5p | 1 | ......_ | 6 | 85 |
| MIMAT0031053 | mdo-miR-7398a-4-5p | 1 | ......_ | 6 | 85 |
| MIMAT0028900 | mdo-miR-7398a-5p | 1 | ......_ | 6 | 85 |
| MIMAT0028916 | mdo-miR-7398b-5p | 1 | ......_ | 6 | 85 |
| MIMAT0028914 | mdo-miR-7398c-5p | 1 | ......_ | 6 | 85 |
| MIMAT0028912 | mdo-miR-7398m-5p | 1 | ......_ | 6 | 85 |
| MIMAT0031051 | mdo-miR-7398a-1-5p | 1 | ......_ | 6 | 85 |
| MIMAT0028427 | mmu-miR-7229-3p | 6 | ......_ | 1 | 85 |
| MIMAT0028369 | mml-miR-7202-3p | 8 | _...... | 3 | 85 |
| MIMAT0025153 | mmu-miR-6401 | 6 | _...... | 1 | 85 |
| MIMAT0024874 | osa-miR6251 | 1 | ......_ | 6 | 85 |
| MIMAT0024856 | rno-miR-6216 | 8 | ......_ | 3 | 85 |
| MIMAT0024120 | ggo-miR-92b | 8 | _...... | 3 | 85 |
| MIMAT0022247 | sbi-miR5565c | 6 | ......_ | 1 | 85 |
| MIMAT0019980 | hsa-miR-4801 | 6 | ......_ | 1 | 85 |
| MIMAT0018881 | tca-miR-3891-3p | 2 | _...... | 7 | 85 |
| MIMAT0018541 | ame-miR-3767 | 6 | ......_ | 1 | 85 |
| MIMAT0018525 | ame-miR-3755 | 3 | ......_ | 8 | 85 |
| MIMAT0017853 | rno-miR-3572 | 6 | _...... | 1 | 85 |
| MIMAT0017851 | rno-miR-3571 | 6 | ......_ | 1 | 85 |
| MIMAT0019215 | hsa-miR-3177-5p | 1 | ......_ | 6 | 85 |
| MIMAT0017358 | rno-miR-511-3p | 3 | ......_ | 8 | 85 |
| MIMAT0011453 | cel-miR-2209b-5p | 2 | _...... | 7 | 85 |
| MIMAT0011433 | cel-miR-2209c-5p | 3 | _...... | 8 | 85 |
| MIMAT0011431 | cel-miR-2209a-5p | 3 | _...... | 8 | 85 |
| MIMAT0026893 | mml-miR-511-3p | 3 | ......_ | 8 | 85 |
| MIMAT0006048 | odi-miR-1495 | 2 | _...... | 7 | 85 |
| MIMAT0004465 | mdv2-miR-M22-5p | 8 | _...... | 3 | 85 |
| MIMAT0017281 | mmu-miR-511-3p | 3 | ......_ | 8 | 85 |
| MIMAT0004882 | mmu-miR-466f-3p | 8 | ......_ | 3 | 85 |
| MIMAT0003926 | mdv1-miR-M5-3p | 1 | ......_ | 6 | 85 |
| MIMAT0017253 | mmu-miR-669c-3p | 6 | ......_ | 1 | 85 |
| MIMAT0026606 | hsa-miR-511-3p | 3 | ......_ | 8 | 85 |
