| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tgtgtatc | 8 | ||
| MIMAT0024856 | rno-miR-6216 | 8 | ........ | 1 | 100 |
| MIMAT0003926 | mdv1-miR-M5-3p | 1 | ........ | 8 | 100 |
| MIMAT0036071 | chi-miR-223-5p | 1 | ......._ | 7 | 87 |
| MIMAT0034149 | gra-miR8737 | 1 | _....... | 7 | 87 |
| MIMAT0032773 | ath-miR8174 | 2 | ......._ | 8 | 87 |
| MIMAT0018762 | tca-miR-3853-5p | 2 | ......._ | 8 | 87 |
| MIMAT0016584 | cin-miR-4047-3p | 2 | ......._ | 8 | 87 |
| MIMAT0015002 | hsa-miR-466 | 7 | ......._ | 1 | 87 |
| MIMAT0012365 | dps-miR-2552-3p | 2 | ......._ | 8 | 87 |
| MIMAT0011319 | mtr-miR2199 | 8 | _....... | 2 | 87 |
| MIMAT0005834 | mmu-miR-466i-3p | 7 | ......._ | 1 | 87 |
| MIMAT0004882 | mmu-miR-466f-3p | 8 | ......._ | 2 | 87 |
| MIMAT0020844 | dme-miR-318-5p | 8 | _....... | 2 | 87 |
| MIMAT0028774 | mdo-miR-7371b-5p | 1 | .t...... | 8 | 87 |
| MIMAT0024874 | osa-miR6251 | 1 | ......g. | 8 | 87 |
| MIMAT0020078 | spu-miR-4855 | 1 | ......a. | 8 | 87 |
| MIMAT0020072 | spu-miR-4849 | 1 | ......a. | 8 | 87 |
| MIMAT0015247 | cin-let-7a-1-3p | 1 | ......a. | 8 | 87 |
| MIMAT0037049 | ssc-miR-9831-3p | 2 | ......__ | 7 | 75 |
| MIMAT0036852 | oha-miR-223-5p | 1 | _......_ | 6 | 75 |
| MIMAT0036401 | gma-miR9764 | 8 | __...... | 3 | 75 |
| MIMAT0036082 | chi-miR-2318 | 2 | _......_ | 7 | 75 |
| MIMAT0035418 | nve-miR-9457 | 6 | ......__ | 1 | 75 |
| MIMAT0034597 | eca-miR-9053 | 6 | ......__ | 1 | 75 |
| MIMAT0033295 | ppc-miR-8252b-3p | 6 | ......__ | 1 | 75 |
| MIMAT0030293 | bdi-miR7771-3p | 2 | ......__ | 7 | 75 |
| MIMAT0030189 | bdi-miR7728-3p | 8 | _......_ | 3 | 75 |
| MIMAT0028936 | mdo-miR-7398i-5p | 1 | ......__ | 6 | 75 |
| MIMAT0028928 | mdo-miR-7398j-5p | 1 | ......__ | 6 | 75 |
| MIMAT0028922 | mdo-miR-7398d-5p | 1 | ......__ | 6 | 75 |
| MIMAT0028920 | mdo-miR-7398q-5p | 1 | ......__ | 6 | 75 |
| MIMAT0031054 | mdo-miR-7398a-5-5p | 1 | ......__ | 6 | 75 |
| MIMAT0031053 | mdo-miR-7398a-4-5p | 1 | ......__ | 6 | 75 |
| MIMAT0028900 | mdo-miR-7398a-5p | 1 | ......__ | 6 | 75 |
| MIMAT0028916 | mdo-miR-7398b-5p | 1 | ......__ | 6 | 75 |
| MIMAT0028914 | mdo-miR-7398c-5p | 1 | ......__ | 6 | 75 |
| MIMAT0028912 | mdo-miR-7398m-5p | 1 | ......__ | 6 | 75 |
| MIMAT0028910 | mdo-miR-7398l-5p | 2 | ......__ | 7 | 75 |
| MIMAT0028902 | mdo-miR-7398r-5p | 2 | ......__ | 7 | 75 |
| MIMAT0031051 | mdo-miR-7398a-1-5p | 1 | ......__ | 6 | 75 |
| MIMAT0028427 | mmu-miR-7229-3p | 6 | ......__ | 1 | 75 |
| MIMAT0023098 | tur-miR-137-5p | 1 | _......_ | 6 | 75 |
| MIMAT0022247 | sbi-miR5565c | 6 | ......__ | 1 | 75 |
| MIMAT0021893 | aca-miR-223-5p | 2 | _......_ | 7 | 75 |
| MIMAT0020573 | bdi-miR5066 | 3 | _......_ | 8 | 75 |
| MIMAT0020515 | dme-miR-4909-3p | 3 | __...... | 8 | 75 |
| MIMAT0020035 | sko-miR-4827b | 3 | _......_ | 8 | 75 |
| MIMAT0019980 | hsa-miR-4801 | 6 | ......__ | 1 | 75 |
| MIMAT0019959 | hsa-miR-4789-5p | 8 | _......_ | 3 | 75 |
| MIMAT0019754 | hsa-miR-4672 | 7 | ......__ | 2 | 75 |
| MIMAT0019341 | mmu-miR-3963 | 1 | __...... | 6 | 75 |
| MIMAT0018366 | far-miR1122 | 8 | __...... | 3 | 75 |
| MIMAT0018357 | hsa-miR-3941 | 7 | ......__ | 2 | 75 |
| MIMAT0018793 | tca-miR-3860-3p | 2 | ......__ | 7 | 75 |
| MIMAT0018699 | tca-miR-iab-8-3p | 8 | __...... | 3 | 75 |
| MIMAT0018541 | ame-miR-3767 | 6 | ......__ | 1 | 75 |
| MIMAT0018525 | ame-miR-3755 | 3 | ......__ | 8 | 75 |
| MIMAT0017936 | aly-miR4247 | 1 | __...... | 6 | 75 |
| MIMAT0017851 | rno-miR-3571 | 6 | ......__ | 1 | 75 |
| MIMAT0019215 | hsa-miR-3177-5p | 1 | ......__ | 6 | 75 |
| MIMAT0014547 | tgu-miR-2991 | 2 | __...... | 7 | 75 |
| MIMAT0017358 | rno-miR-511-3p | 3 | ......__ | 8 | 75 |
| MIMAT0012505 | dsi-miR-iab-8-3p | 8 | __...... | 3 | 75 |
| MIMAT0012493 | dsi-miR-137-5p | 3 | _......_ | 8 | 75 |
| MIMAT0012285 | dps-miR-iab-8-3p | 8 | __...... | 3 | 75 |
| MIMAT0012237 | dps-miR-137-5p | 3 | _......_ | 8 | 75 |
| MIMAT0012183 | bdi-miR1122 | 8 | __...... | 3 | 75 |
| MIMAT0011841 | bta-miR-2318 | 1 | _......_ | 6 | 75 |
| MIMAT0009758 | nve-miR-2024a-3p | 7 | ......__ | 2 | 75 |
| MIMAT0019117 | tca-miR-137-5p | 3 | _......_ | 8 | 75 |
| MIMAT0026893 | mml-miR-511-3p | 3 | ......__ | 8 | 75 |
| MIMAT0015248 | cin-let-7a-2-3p | 2 | ......__ | 7 | 75 |
| MIMAT0007069 | oan-miR-1421l-1-3p | 1 | __...... | 6 | 75 |
| MIMAT0007019 | oan-miR-223-5p | 2 | _......_ | 7 | 75 |
| MIMAT0005846 | mmu-miR-467f | 8 | _......_ | 3 | 75 |
| MIMAT0005357 | tae-miR1122a | 8 | __...... | 3 | 75 |
| MIMAT0020888 | dme-miR-137-5p | 3 | _......_ | 8 | 75 |
| MIMAT0005464 | dme-miR-iab-8-3p | 7 | __...... | 2 | 75 |
| MIMAT0017281 | mmu-miR-511-3p | 3 | ......__ | 8 | 75 |
| MIMAT0026682 | mdo-miR-223-5p | 1 | _......_ | 6 | 75 |
| MIMAT0017253 | mmu-miR-669c-3p | 6 | ......__ | 1 | 75 |
| MIMAT0017222 | rno-miR-485-3p | 7 | _......_ | 2 | 75 |
| MIMAT0026606 | hsa-miR-511-3p | 3 | ......__ | 8 | 75 |
| MIMAT0017165 | rno-miR-223-5p | 2 | _......_ | 7 | 75 |
| MIMAT0017056 | mmu-miR-223-5p | 2 | _......_ | 7 | 75 |
| MIMAT0000304 | cel-miR-248 | 6 | _......_ | 1 | 75 |
| MIMAT0004570 | hsa-miR-223-5p | 2 | _......_ | 7 | 75 |
