| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tgttgag | 7 | ||
| MIMAT0029620 | crm-miR-7603 | 1 | ....... | 7 | 100 |
| MIMAT0026448 | sbi-miR6233-5p | 1 | ....... | 7 | 100 |
| MIMAT0021208 | mtr-miR2670e | 8 | ....... | 2 | 100 |
| MIMAT0012632 | bmo-miR-2752 | 7 | ....... | 1 | 100 |
| MIMAT0036903 | oha-miR-338-5p | 6 | ......_ | 1 | 85 |
| MIMAT0036499 | tch-miR-505-3p | 8 | ......_ | 3 | 85 |
| MIMAT0036278 | chi-miR-545-3p | 6 | ......_ | 1 | 85 |
| MIMAT0036269 | chi-miR-505-3p | 6 | ......_ | 1 | 85 |
| MIMAT0035145 | efu-miR-9355 | 3 | ......_ | 8 | 85 |
| MIMAT0035003 | efu-miR-9318a | 1 | ......_ | 6 | 85 |
| MIMAT0034981 | efu-miR-9308 | 1 | ......_ | 6 | 85 |
| MIMAT0034943 | efu-let-7c | 1 | _...... | 6 | 85 |
| MIMAT0034787 | efu-miR-9201b | 1 | ......_ | 6 | 85 |
| MIMAT0034527 | eca-miR-8990 | 1 | ......_ | 6 | 85 |
| MIMAT0034191 | gra-miR8761 | 1 | ......_ | 6 | 85 |
| MIMAT0033012 | ppc-miR-8264-5p | 3 | ......_ | 8 | 85 |
| MIMAT0032974 | ppc-miR-8253-5p | 1 | ......_ | 6 | 85 |
| MIMAT0032676 | ssa-miR-727-3p | 1 | _...... | 6 | 85 |
| MIMAT0032628 | ssa-miR-375-3-5p | 3 | _...... | 8 | 85 |
| MIMAT0032625 | ssa-miR-375-5p | 3 | _...... | 8 | 85 |
| MIMAT0031272 | stu-miR827-5p | 3 | ......_ | 8 | 85 |
| MIMAT0029660 | cbn-miR-7621a | 6 | ......_ | 1 | 85 |
| MIMAT0028361 | mml-miR-7198-3p | 6 | ......_ | 1 | 85 |
| MIMAT0026315 | ccr-miR-727-3p | 1 | _...... | 6 | 85 |
| MIMAT0022348 | cin-miR-5610-3p | 3 | ......_ | 8 | 85 |
| MIMAT0022084 | aca-miR-5457 | 6 | ......_ | 1 | 85 |
| MIMAT0021988 | aca-miR-727-3p | 1 | _...... | 6 | 85 |
| MIMAT0032122 | gma-miR5041-3p | 1 | _...... | 6 | 85 |
| MIMAT0020002 | cel-miR-4814-5p | 8 | _...... | 3 | 85 |
| MIMAT0018329 | gma-miR4410 | 3 | ......_ | 8 | 85 |
| MIMAT0018229 | gma-miR4341 | 3 | ......_ | 8 | 85 |
| MIMAT0018224 | hvu-miR397a | 3 | _...... | 8 | 85 |
| MIMAT0018034 | vvi-miR3631d | 3 | ......_ | 8 | 85 |
| MIMAT0018033 | vvi-miR3631c | 3 | ......_ | 8 | 85 |
| MIMAT0018031 | vvi-miR3631b-5p | 3 | ......_ | 8 | 85 |
| MIMAT0018029 | vvi-miR3631a-5p | 3 | ......_ | 8 | 85 |
| MIMAT0016636 | cin-miR-4074-5p | 1 | ......_ | 6 | 85 |
| MIMAT0017839 | rno-miR-3065-5p | 6 | ......_ | 1 | 85 |
| MIMAT0016191 | ppy-miR-1267 | 3 | ......_ | 8 | 85 |
| MIMAT0015928 | ppy-miR-505 | 8 | ......_ | 3 | 85 |
| MIMAT0017607 | aly-miR827-5p | 3 | ......_ | 8 | 85 |
| MIMAT0015066 | hsa-miR-3065-5p | 6 | ......_ | 1 | 85 |
| MIMAT0014836 | mmu-miR-3065-5p | 6 | ......_ | 1 | 85 |
| MIMAT0013961 | ssc-miR-505 | 6 | ......_ | 1 | 85 |
| MIMAT0013239 | eca-miR-545 | 6 | ......_ | 1 | 85 |
| MIMAT0013229 | eca-miR-505 | 8 | ......_ | 3 | 85 |
| MIMAT0012434 | dsi-miR-987-3p | 8 | ......_ | 3 | 85 |
| MIMAT0012236 | dps-miR-987-3p | 8 | ......_ | 3 | 85 |
| MIMAT0009341 | bta-miR-505 | 8 | ......_ | 3 | 85 |
| MIMAT0009102 | dya-miR-287 | 3 | ......_ | 8 | 85 |
| MIMAT0009003 | dwi-miR-287 | 3 | ......_ | 8 | 85 |
| MIMAT0008930 | dvi-miR-287 | 3 | ......_ | 8 | 85 |
| MIMAT0008899 | dsi-miR-287 | 3 | ......_ | 8 | 85 |
| MIMAT0008770 | dse-miR-287 | 3 | ......_ | 8 | 85 |
| MIMAT0008757 | dpe-miR-287 | 3 | ......_ | 8 | 85 |
| MIMAT0008659 | dmo-miR-287 | 3 | ......_ | 8 | 85 |
| MIMAT0008563 | dgr-miR-287 | 3 | ......_ | 8 | 85 |
| MIMAT0008483 | der-miR-287 | 3 | ......_ | 8 | 85 |
| MIMAT0008424 | dan-miR-287 | 3 | ......_ | 8 | 85 |
| MIMAT0008178 | ptr-miR-505 | 8 | ......_ | 3 | 85 |
| MIMAT0007991 | ptr-miR-1267 | 3 | ......_ | 8 | 85 |
| MIMAT0007826 | osa-miR1873 | 6 | ......_ | 1 | 85 |
| MIMAT0006369 | mml-miR-505-3p | 8 | ......_ | 3 | 85 |
| MIMAT0007198 | oan-miR-1396 | 3 | ......_ | 8 | 85 |
| MIMAT0005697 | vvi-miR171h | 3 | _...... | 8 | 85 |
| MIMAT0005921 | hsa-miR-1267 | 3 | ......_ | 8 | 85 |
| MIMAT0003756 | dre-miR-727-3p | 1 | _...... | 6 | 85 |
| MIMAT0003513 | mmu-miR-505-3p | 8 | ......_ | 3 | 85 |
| MIMAT0002876 | hsa-miR-505-3p | 8 | ......_ | 3 | 85 |
| MIMAT0001251 | dps-miR-287 | 3 | ......_ | 8 | 85 |
| MIMAT0000360 | dme-miR-287-3p | 3 | ......_ | 8 | 85 |
