| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tgtttcag | 8 | ||
| MIMAT0028165 | hcmv-miR-US22-5p | 1 | ........ | 8 | 100 |
| MIMAT0025713 | gga-miR-6617-3p | 1 | ........ | 8 | 100 |
| MIMAT0014946 | mmu-miR-3074-2-3p | 1 | ........ | 8 | 100 |
| MIMAT0005205 | ppt-miR1075 | 1 | ........ | 8 | 100 |
| MIMAT0037046 | ssc-miR-9828-3p | 2 | _....... | 8 | 87 |
| MIMAT0036358 | gma-miR9738 | 7 | ......._ | 1 | 87 |
| MIMAT0036255 | chi-miR-494 | 7 | ......._ | 1 | 87 |
| MIMAT0035028 | efu-miR-494 | 7 | ......._ | 1 | 87 |
| MIMAT0033113 | ppc-miR-8298-5p | 1 | ......._ | 7 | 87 |
| MIMAT0030172 | bdi-miR7723a-5p | 7 | ......._ | 1 | 87 |
| MIMAT0029859 | mmu-miR-7675-3p | 1 | ......._ | 7 | 87 |
| MIMAT0028684 | mdo-miR-7338-5p | 2 | _....... | 8 | 87 |
| MIMAT0024552 | cca-miR6113 | 8 | _....... | 2 | 87 |
| MIMAT0024160 | ggo-miR-494 | 7 | ......._ | 1 | 87 |
| MIMAT0023186 | gma-miR5781 | 7 | _....... | 1 | 87 |
| MIMAT0019268 | oar-miR-494-3p | 7 | ......._ | 1 | 87 |
| MIMAT0015915 | ppy-miR-494 | 7 | ......._ | 1 | 87 |
| MIMAT0013164 | eca-miR-494 | 7 | ......._ | 1 | 87 |
| MIMAT0012838 | rno-miR-653-5p | 8 | ......._ | 2 | 87 |
| MIMAT0009905 | cfa-miR-494 | 7 | ......._ | 1 | 87 |
| MIMAT0009334 | bta-miR-494 | 7 | ......._ | 1 | 87 |
| MIMAT0008168 | ptr-miR-494 | 7 | ......._ | 1 | 87 |
| MIMAT0006356 | mml-miR-494-3p | 7 | ......._ | 1 | 87 |
| MIMAT0003193 | rno-miR-494-3p | 7 | ......._ | 1 | 87 |
| MIMAT0003182 | mmu-miR-494-3p | 7 | ......._ | 1 | 87 |
| MIMAT0002816 | hsa-miR-494-3p | 7 | ......._ | 1 | 87 |
| MIMAT0033278 | ppc-miR-8358-5p | 1 | .c...... | 8 | 87 |
| MIMAT0033185 | ppc-miR-8322-3p | 8 | .c...... | 1 | 87 |
| MIMAT0032228 | lva-miR-2007-5p | 1 | .a...... | 8 | 87 |
| MIMAT0032181 | pmi-miR-2007-5p | 1 | .a...... | 8 | 87 |
| MIMAT0022499 | hsa-miR-5705 | 1 | ......g. | 8 | 87 |
| MIMAT0020023 | sko-miR-2007-5p | 1 | .a...... | 8 | 87 |
| MIMAT0009748 | spu-miR-2007 | 1 | .a...... | 8 | 87 |
| MIMAT0036896 | oha-miR-30d-3p | 2 | __...... | 7 | 75 |
| MIMAT0036889 | oha-miR-30a-3p | 2 | __...... | 7 | 75 |
| MIMAT0036887 | oha-miR-30e-3p | 2 | __...... | 7 | 75 |
| MIMAT0036816 | oha-miR-205a-3p | 3 | __...... | 8 | 75 |
| MIMAT0036129 | chi-miR-30e-3p | 2 | __...... | 7 | 75 |
| MIMAT0036127 | chi-miR-30d-3p | 1 | __...... | 6 | 75 |
| MIMAT0036122 | chi-miR-30a-3p | 2 | __...... | 7 | 75 |
| MIMAT0035974 | chi-miR-147-5p | 8 | ......__ | 3 | 75 |
| MIMAT0035761 | tae-miR9654a-3p | 8 | __...... | 3 | 75 |
| MIMAT0035578 | dvi-miR-957-3p | 6 | _......_ | 1 | 75 |
| MIMAT0035449 | sly-miR9472-5p | 1 | __...... | 6 | 75 |
| MIMAT0035363 | bol-miR9408 | 1 | _......_ | 6 | 75 |
| MIMAT0035136 | efu-miR-30e | 3 | __...... | 8 | 75 |
| MIMAT0035071 | efu-miR-30d | 2 | __...... | 7 | 75 |
| MIMAT0034973 | efu-miR-30a | 3 | __...... | 8 | 75 |
| MIMAT0034857 | efu-miR-9241 | 8 | _......_ | 3 | 75 |
| MIMAT0034790 | efu-miR-9188b | 8 | __...... | 3 | 75 |
| MIMAT0034437 | eca-miR-8909 | 7 | __...... | 2 | 75 |
| MIMAT0034006 | gra-miR8648 | 1 | __...... | 6 | 75 |
| MIMAT0033652 | sma-miR-8466-3p | 2 | _......_ | 7 | 75 |
| MIMAT0033573 | sma-miR-8434-3p | 1 | _......_ | 6 | 75 |
| MIMAT0033492 | str-miR-8399-5p | 1 | __...... | 6 | 75 |
| MIMAT0033055 | ppc-miR-8278-5p | 3 | _......_ | 8 | 75 |
| MIMAT0032830 | cel-miR-8206-3p | 1 | __...... | 6 | 75 |
| MIMAT0032610 | ssa-miR-30d-2-3p | 2 | __...... | 7 | 75 |
| MIMAT0032609 | ssa-miR-30d-3p | 2 | __...... | 7 | 75 |
| MIMAT0032607 | ssa-miR-30c-3p | 2 | __...... | 7 | 75 |
| MIMAT0032605 | ssa-miR-30b-3p | 2 | __...... | 7 | 75 |
| MIMAT0032498 | ssa-miR-205b-3-3p | 3 | __...... | 8 | 75 |
| MIMAT0032497 | ssa-miR-205b-2-3p | 3 | __...... | 8 | 75 |
| MIMAT0032496 | ssa-miR-205b-1-3p | 3 | __...... | 8 | 75 |
| MIMAT0032362 | ssa-miR-142a-3p | 3 | ......__ | 8 | 75 |
| MIMAT0031558 | ppe-miR8131-5p | 2 | __...... | 7 | 75 |
| MIMAT0031225 | stu-miR8046-3p | 8 | __...... | 3 | 75 |
| MIMAT0031198 | stu-miR8015-3p | 1 | _......_ | 6 | 75 |
| MIMAT0031196 | stu-miR8014-5p | 3 | ......__ | 8 | 75 |
| MIMAT0030659 | prd-miR-7914-3p | 6 | __...... | 1 | 75 |
| MIMAT0030056 | oar-miR-30a-3p | 2 | __...... | 7 | 75 |
| MIMAT0029677 | cbn-miR-7634 | 1 | _......_ | 6 | 75 |
| MIMAT0029562 | ipu-miR-7563c | 1 | __...... | 6 | 75 |
| MIMAT0029500 | ipu-miR-30e | 2 | __...... | 7 | 75 |
| MIMAT0029499 | ipu-miR-30d | 2 | __...... | 7 | 75 |
| MIMAT0029496 | ipu-miR-30a | 2 | __...... | 7 | 75 |
| MIMAT0029151 | ghr-miR7504a | 8 | _......_ | 3 | 75 |
| MIMAT0028623 | mdo-miR-30d-3p | 1 | __...... | 6 | 75 |
| MIMAT0028423 | mmu-miR-7227-3p | 7 | __...... | 2 | 75 |
| MIMAT0028238 | mml-miR-4766-5p | 7 | __...... | 2 | 75 |
| MIMAT0026371 | bma-miR-5872 | 1 | __...... | 6 | 75 |
| MIMAT0027870 | mmu-miR-6984-5p | 7 | __...... | 2 | 75 |
| MIMAT0025799 | gga-miR-6693-3p | 2 | __...... | 7 | 75 |
| MIMAT0027339 | mmu-miR-6481 | 8 | __...... | 3 | 75 |
| MIMAT0024284 | ggo-miR-4738 | 6 | _......_ | 1 | 75 |
| MIMAT0023901 | cgr-miR-30e-3p | 2 | __...... | 7 | 75 |
| MIMAT0023899 | cgr-miR-30d | 2 | __...... | 7 | 75 |
| MIMAT0023895 | cgr-miR-30a-3p | 2 | __...... | 7 | 75 |
| MIMAT0023658 | ame-miR-6038 | 3 | ......__ | 8 | 75 |
| MIMAT0031159 | stu-miR6024-5p | 7 | ......__ | 2 | 75 |
| MIMAT0023520 | ath-miR5997 | 6 | _......_ | 1 | 75 |
| MIMAT0023359 | hco-miR-5905 | 7 | __...... | 2 | 75 |
| MIMAT0022667 | ola-miR-30a-3p | 2 | __...... | 7 | 75 |
| MIMAT0022600 | ola-miR-30d-3p | 2 | __...... | 7 | 75 |
| MIMAT0022597 | ola-miR-30e | 2 | __...... | 7 | 75 |
| MIMAT0022333 | cin-miR-5604-5p | 3 | _......_ | 8 | 75 |
| MIMAT0022164 | osa-miR5529 | 1 | _......_ | 6 | 75 |
| MIMAT0021929 | aca-miR-30e-3p | 2 | __...... | 7 | 75 |
| MIMAT0021927 | aca-miR-30d-3p | 1 | __...... | 6 | 75 |
| MIMAT0021921 | aca-miR-30a-3p | 2 | __...... | 7 | 75 |
| MIMAT0020603 | hsa-miR-5096 | 1 | _......_ | 6 | 75 |
| MIMAT0020185 | dme-miR-4963-5p | 2 | _......_ | 7 | 75 |
| MIMAT0020055 | sko-miR-4837 | 1 | ......__ | 6 | 75 |
| MIMAT0019917 | hsa-miR-4766-5p | 7 | __...... | 2 | 75 |
| MIMAT0019867 | hsa-miR-4738-3p | 6 | _......_ | 1 | 75 |
| MIMAT0019429 | pma-miR-30e-3p | 2 | __...... | 7 | 75 |
| MIMAT0019426 | pma-miR-30c-3p | 1 | __...... | 6 | 75 |
| MIMAT0019230 | hsa-miR-3942-3p | 1 | __...... | 6 | 75 |
| MIMAT0018813 | tca-miR-3864-3p | 6 | _......_ | 1 | 75 |
| MIMAT0018783 | tca-miR-3858-3p | 6 | _......_ | 1 | 75 |
| MIMAT0018554 | ame-miR-3777 | 8 | ......__ | 3 | 75 |
| MIMAT0016890 | hsa-miR-4261 | 8 | ......__ | 3 | 75 |
| MIMAT0017924 | aly-miR4235 | 7 | __...... | 2 | 75 |
| MIMAT0016743 | cin-miR-4142-3p | 2 | __...... | 7 | 75 |
| MIMAT0016736 | cin-miR-4139-5p | 8 | __...... | 3 | 75 |
| MIMAT0016641 | cin-miR-4076-3p | 3 | ......__ | 8 | 75 |
| MIMAT0016442 | cin-miR-4000i-5p | 6 | _......_ | 1 | 75 |
| MIMAT0016440 | cin-miR-4000h-5p | 6 | _......_ | 1 | 75 |
| MIMAT0016438 | cin-miR-4000g-5p | 6 | _......_ | 1 | 75 |
| MIMAT0016436 | cin-miR-4000f-5p | 6 | _......_ | 1 | 75 |
| MIMAT0016434 | cin-miR-4000e-5p | 6 | _......_ | 1 | 75 |
| MIMAT0016432 | cin-miR-4000b-5p | 6 | _......_ | 1 | 75 |
| MIMAT0016428 | cin-miR-4000d-5p | 6 | _......_ | 1 | 75 |
| MIMAT0016426 | cin-miR-4000c-5p | 6 | _......_ | 1 | 75 |
| MIMAT0017600 | aly-miR822-3p | 6 | ......__ | 1 | 75 |
| MIMAT0014613 | tgu-miR-30d-3p | 1 | __...... | 6 | 75 |
| MIMAT0014651 | tgu-miR-29b-2-5p | 3 | _......_ | 8 | 75 |
| MIMAT0014535 | tgu-miR-30a-3p | 2 | __...... | 7 | 75 |
| MIMAT0014629 | tgu-miR-30b-3p | 2 | __...... | 7 | 75 |
| MIMAT0014369 | cqu-miR-957 | 6 | _......_ | 1 | 75 |
| MIMAT0014248 | aae-miR-957 | 6 | _......_ | 1 | 75 |
| MIMAT0013873 | ssc-miR-30e-3p | 2 | __...... | 7 | 75 |
| MIMAT0026944 | mdo-miR-33-3p | 3 | ......__ | 8 | 75 |
| MIMAT0013717 | bmo-miR-2809 | 6 | ......__ | 1 | 75 |
| MIMAT0013628 | bmo-miR-2757-3p | 6 | __...... | 1 | 75 |
| MIMAT0012498 | dsi-miR-957 | 6 | _......_ | 1 | 75 |
| MIMAT0012230 | dps-miR-957-3p | 6 | _......_ | 1 | 75 |
| MIMAT0011831 | bta-miR-2284t-5p | 6 | ......__ | 1 | 75 |
| MIMAT0011826 | bta-miR-2311 | 8 | __...... | 3 | 75 |
| MIMAT0015300 | ssc-miR-30a-3p | 2 | __...... | 7 | 75 |
| MIMAT0010106 | aga-miR-957 | 6 | _......_ | 1 | 75 |
| MIMAT0009805 | nve-miR-2041a-3p | 6 | _......_ | 1 | 75 |
| MIMAT0006627 | cfa-miR-30e | 2 | __...... | 7 | 75 |
| MIMAT0026899 | mml-miR-577-3p | 2 | _......_ | 7 | 75 |
| MIMAT0006374 | mml-miR-516a-3p | 1 | ......__ | 6 | 75 |
| MIMAT0026807 | mml-miR-30e-3p | 1 | __...... | 6 | 75 |
| MIMAT0026806 | mml-miR-30d-3p | 1 | __...... | 6 | 75 |
| MIMAT0007431 | gga-miR-1571 | 1 | ......__ | 6 | 75 |
| MIMAT0006037 | odi-miR-1484 | 6 | _......_ | 1 | 75 |
| MIMAT0007343 | gga-miR-1465 | 1 | __...... | 6 | 75 |
| MIMAT0007204 | oan-miR-30e-3p | 2 | __...... | 7 | 75 |
| MIMAT0007055 | oan-miR-1374 | 1 | ......__ | 6 | 75 |
| MIMAT0007042 | oan-miR-30d-3p | 2 | __...... | 7 | 75 |
| MIMAT0006914 | oan-miR-30a-3p | 2 | __...... | 7 | 75 |
| MIMAT0006867 | oan-miR-205-3p | 3 | __...... | 8 | 75 |
| MIMAT0006795 | oan-miR-1326 | 7 | __...... | 2 | 75 |
| MIMAT0005470 | dme-miR-957-3p | 6 | _......_ | 1 | 75 |
| MIMAT0004365 | ppt-miR894 | 2 | _......_ | 7 | 75 |
| MIMAT0004938 | mmu-miR-875-3p | 7 | __...... | 2 | 75 |
| MIMAT0017269 | mmu-miR-147-5p | 8 | ......__ | 3 | 75 |
| MIMAT0026652 | mdo-miR-30a-3p | 1 | __...... | 6 | 75 |
| MIMAT0003791 | bta-miR-142-3p | 3 | ......__ | 8 | 75 |
| MIMAT0003575 | xtr-miR-30a-3p | 2 | __...... | 7 | 75 |
| MIMAT0003474 | mmu-miR-694 | 6 | __...... | 1 | 75 |
| MIMAT0003448 | rlcv-miR-rL1-16-3p | 8 | _......_ | 3 | 75 |
| MIMAT0026613 | hsa-miR-510-3p | 8 | _......_ | 3 | 75 |
| MIMAT0002378 | ppa-miR-30a-3p | 2 | __...... | 7 | 75 |
| MIMAT0002376 | ppy-miR-30a-3p | 2 | __...... | 7 | 75 |
| MIMAT0002374 | ggo-miR-30a-3p | 2 | __...... | 7 | 75 |
| MIMAT0002372 | ptr-miR-30a-3p | 2 | __...... | 7 | 75 |
| MIMAT0002370 | mml-miR-30a-3p | 2 | __...... | 7 | 75 |
| MIMAT0003402 | dre-miR-30e-3p | 2 | __...... | 7 | 75 |
| MIMAT0031951 | dre-miR-30a-3p | 2 | __...... | 7 | 75 |
| MIMAT0001569 | mghv-miR-M1-6-3p | 6 | _......_ | 1 | 75 |
| MIMAT0031925 | dre-miR-205-3p | 3 | __...... | 8 | 75 |
| MIMAT0026538 | gga-miR-30e-3p | 1 | __...... | 6 | 75 |
| MIMAT0001136 | gga-miR-30a-3p | 2 | __...... | 7 | 75 |
| MIMAT0000809 | rno-miR-30a-3p | 2 | __...... | 7 | 75 |
| MIMAT0004722 | rno-miR-30d-3p | 2 | __...... | 7 | 75 |
| MIMAT0004720 | rno-miR-30e-3p | 2 | __...... | 7 | 75 |
| MIMAT0000693 | hsa-miR-30e-3p | 2 | __...... | 7 | 75 |
| MIMAT0017011 | mmu-miR-30d-3p | 2 | __...... | 7 | 75 |
| MIMAT0009197 | hsa-miR-205-3p | 3 | __...... | 8 | 75 |
| MIMAT0000249 | mmu-miR-30e-3p | 2 | __...... | 7 | 75 |
| MIMAT0004551 | hsa-miR-30d-3p | 2 | __...... | 7 | 75 |
| MIMAT0017003 | mmu-miR-205-3p | 3 | __...... | 8 | 75 |
| MIMAT0000129 | mmu-miR-30a-3p | 2 | __...... | 7 | 75 |
| MIMAT0000088 | hsa-miR-30a-3p | 2 | __...... | 7 | 75 |
