| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ttaatgct | 8 | ||
| MIMAT0036472 | tch-miR-155-5p | 1 | ........ | 8 | 100 |
| MIMAT0035988 | chi-miR-155-5p | 1 | ........ | 8 | 100 |
| MIMAT0035061 | efu-miR-155 | 1 | ........ | 8 | 100 |
| MIMAT0032392 | ssa-miR-155-5p | 1 | ........ | 8 | 100 |
| MIMAT0030409 | rno-miR-155-5p | 1 | ........ | 8 | 100 |
| MIMAT0029429 | ipu-miR-155 | 1 | ........ | 8 | 100 |
| MIMAT0026231 | ccr-miR-155 | 1 | ........ | 8 | 100 |
| MIMAT0024221 | ggo-miR-155 | 1 | ........ | 8 | 100 |
| MIMAT0023788 | cgr-miR-155 | 1 | ........ | 8 | 100 |
| MIMAT0021788 | aca-miR-155-5p | 1 | ........ | 8 | 100 |
| MIMAT0019485 | pma-miR-155 | 1 | ........ | 8 | 100 |
| MIMAT0022959 | ssc-miR-155-5p | 1 | ........ | 8 | 100 |
| MIMAT0015777 | ppy-miR-155 | 1 | ........ | 8 | 100 |
| MIMAT0014612 | tgu-miR-155-5p | 1 | ........ | 8 | 100 |
| MIMAT0013182 | eca-miR-155 | 1 | ........ | 8 | 100 |
| MIMAT0009241 | bta-miR-155 | 1 | ........ | 8 | 100 |
| MIMAT0008048 | ptr-miR-155 | 1 | ........ | 8 | 100 |
| MIMAT0006671 | cfa-miR-155 | 1 | ........ | 8 | 100 |
| MIMAT0006216 | mml-miR-155 | 1 | ........ | 8 | 100 |
| MIMAT0006131 | csa-miR-155 | 1 | ........ | 8 | 100 |
| MIMAT0006105 | cin-miR-155 | 1 | ........ | 8 | 100 |
| MIMAT0006988 | oan-miR-155-5p | 1 | ........ | 8 | 100 |
| MIMAT0003924 | mdv1-miR-M4-5p | 1 | ........ | 8 | 100 |
| MIMAT0003608 | xtr-miR-155 | 1 | ........ | 8 | 100 |
| MIMAT0002181 | kshv-miR-K12-11-3p | 1 | ........ | 8 | 100 |
| MIMAT0001851 | dre-miR-155 | 1 | ........ | 8 | 100 |
| MIMAT0001106 | gga-miR-155 | 1 | ........ | 8 | 100 |
| MIMAT0000646 | hsa-miR-155-5p | 1 | ........ | 8 | 100 |
| MIMAT0000165 | mmu-miR-155-5p | 1 | ........ | 8 | 100 |
| MIMAT0035276 | gsa-miR-2c-5p | 8 | ......._ | 2 | 87 |
| MIMAT0033201 | ppc-miR-8328-3p | 1 | _....... | 7 | 87 |
| MIMAT0019599 | pma-miR-4567 | 1 | _....... | 7 | 87 |
| MIMAT0016513 | cin-miR-4012-3p | 7 | _....... | 1 | 87 |
| MIMAT0013778 | sme-miR-124c-2-5p | 7 | ......._ | 1 | 87 |
| MIMAT0011315 | dre-miR-2194 | 2 | _....... | 8 | 87 |
| MIMAT0035367 | nve-miR-9412 | 1 | .g...... | 8 | 87 |
| MIMAT0032739 | ssa-miR-734-3p | 1 | .a...... | 8 | 87 |
| MIMAT0029370 | lja-miR7543 | 1 | ......a. | 8 | 87 |
| MIMAT0026318 | ccr-miR-734 | 1 | .a...... | 8 | 87 |
| MIMAT0026069 | mdm-miR7128 | 8 | ......a. | 1 | 87 |
| MIMAT0022246 | sbi-miR5567 | 1 | ......a. | 8 | 87 |
| MIMAT0020768 | sly-miR5304 | 1 | .c...... | 8 | 87 |
| MIMAT0021050 | gma-miR5031 | 1 | ......a. | 8 | 87 |
| MIMAT0016546 | cin-miR-4028-3p | 1 | ......a. | 8 | 87 |
| MIMAT0007773 | osa-miR1853-5p | 8 | .g...... | 1 | 87 |
| MIMAT0026784 | gga-miR-1775-5p | 1 | .g...... | 8 | 87 |
| MIMAT0005134 | ppt-miR1031b | 1 | .c...... | 8 | 87 |
| MIMAT0005133 | ppt-miR1031a | 1 | .c...... | 8 | 87 |
| MIMAT0003426 | ebv-miR-BART14-3p | 1 | .a...... | 8 | 87 |
| MIMAT0037128 | ata-miR9672-5p | 2 | ......__ | 7 | 75 |
| MIMAT0036915 | oha-miR-365a-3p | 1 | _......_ | 6 | 75 |
| MIMAT0036676 | oha-miR-126-5p | 7 | _......_ | 2 | 75 |
| MIMAT0036548 | tch-miR-365a-3p | 1 | _......_ | 6 | 75 |
| MIMAT0036498 | tch-miR-365b-3p | 1 | _......_ | 6 | 75 |
| MIMAT0036177 | chi-miR-365-3p | 1 | _......_ | 6 | 75 |
| MIMAT0035099 | efu-miR-365 | 1 | _......_ | 6 | 75 |
| MIMAT0034630 | eca-miR-9085 | 2 | ......__ | 7 | 75 |
| MIMAT0034368 | cfa-miR-8871 | 1 | _......_ | 6 | 75 |
| MIMAT0034141 | gra-miR172b | 8 | __...... | 3 | 75 |
| MIMAT0034116 | gra-miR8723b | 7 | ......__ | 2 | 75 |
| MIMAT0034107 | gra-miR7484e | 3 | ......__ | 8 | 75 |
| MIMAT0034010 | gra-miR8651 | 1 | ......__ | 6 | 75 |
| MIMAT0033894 | atr-miR8605 | 8 | ......__ | 3 | 75 |
| MIMAT0033458 | str-miR-8393-5p | 6 | __...... | 1 | 75 |
| MIMAT0032949 | ppc-miR-8244-3p | 1 | _......_ | 6 | 75 |
| MIMAT0032623 | ssa-miR-365-3p | 1 | _......_ | 6 | 75 |
| MIMAT0030851 | stu-miR7983-3p | 3 | _......_ | 8 | 75 |
| MIMAT0030794 | prd-miR-7954-5p | 2 | _......_ | 7 | 75 |
| MIMAT0030723 | prd-miR-7934-3p | 1 | _......_ | 6 | 75 |
| MIMAT0030678 | prd-miR-7919-5p | 1 | _......_ | 6 | 75 |
| MIMAT0030654 | prd-miR-7913-5p | 7 | _......_ | 2 | 75 |
| MIMAT0030014 | mtr-miR2592br-3p | 2 | __...... | 7 | 75 |
| MIMAT0030012 | mtr-miR2592bq-3p | 2 | __...... | 7 | 75 |
| MIMAT0030009 | mtr-miR2592bp-5p | 2 | __...... | 7 | 75 |
| MIMAT0030008 | mtr-miR2592bo-3p | 2 | __...... | 7 | 75 |
| MIMAT0029998 | mtr-miR7699-5p | 3 | ......__ | 8 | 75 |
| MIMAT0028760 | mdo-miR-7369-5p | 2 | __...... | 7 | 75 |
| MIMAT0028224 | hsa-miR-7157-5p | 8 | __...... | 3 | 75 |
| MIMAT0026294 | ccr-miR-365 | 1 | _......_ | 6 | 75 |
| MIMAT0024329 | mml-miR-1179 | 7 | __...... | 2 | 75 |
| MIMAT0024218 | ggo-miR-1179 | 7 | __...... | 2 | 75 |
| MIMAT0024150 | ggo-miR-365a | 1 | _......_ | 6 | 75 |
| MIMAT0023936 | cgr-miR-365-3p | 1 | _......_ | 6 | 75 |
| MIMAT0023514 | spu-miR-5992 | 8 | _......_ | 3 | 75 |
| MIMAT0022493 | hsa-miR-5700 | 1 | _......_ | 6 | 75 |
| MIMAT0022042 | aca-miR-5422 | 8 | __...... | 3 | 75 |
| MIMAT0022033 | aca-miR-5413-3p | 1 | _......_ | 6 | 75 |
| MIMAT0021948 | aca-miR-365-3p | 1 | _......_ | 6 | 75 |
| MIMAT0021349 | mtr-miR5288 | 7 | __...... | 2 | 75 |
| MIMAT0021331 | mtr-miR2600e | 7 | __...... | 2 | 75 |
| MIMAT0021330 | mtr-miR2600d | 7 | __...... | 2 | 75 |
| MIMAT0021329 | mtr-miR2600c | 7 | __...... | 2 | 75 |
| MIMAT0021328 | mtr-miR2600b | 7 | __...... | 2 | 75 |
| MIMAT0021171 | mtr-miR2592ao | 2 | __...... | 7 | 75 |
| MIMAT0021170 | mtr-miR2592an | 2 | __...... | 7 | 75 |
| MIMAT0021138 | mtr-miR5207 | 6 | ......__ | 1 | 75 |
| MIMAT0021138 | mtr-miR5207 | 3 | ......__ | 8 | 75 |
| MIMAT0019589 | pma-miR-4557 | 2 | __...... | 7 | 75 |
| MIMAT0018753 | tca-miR-3849-3p | 6 | __...... | 1 | 75 |
| MIMAT0016862 | hsa-miR-4310 | 8 | __...... | 3 | 75 |
| MIMAT0017925 | aly-miR4236 | 6 | ......__ | 1 | 75 |
| MIMAT0016836 | cin-miR-4215-3p | 1 | ......__ | 6 | 75 |
| MIMAT0016765 | cin-miR-4159-3p | 1 | ......__ | 6 | 75 |
| MIMAT0016613 | cin-miR-4062-3p | 1 | __...... | 6 | 75 |
| MIMAT0016607 | cin-miR-4059-3p | 2 | __...... | 7 | 75 |
| MIMAT0016144 | ppy-miR-1179 | 7 | __...... | 2 | 75 |
| MIMAT0016013 | ppy-miR-569 | 3 | ......__ | 8 | 75 |
| MIMAT0015853 | ppy-miR-365 | 1 | _......_ | 6 | 75 |
| MIMAT0015585 | bmo-miR-3387-5p | 7 | ......__ | 2 | 75 |
| MIMAT0015504 | bmo-miR-3316 | 7 | _......_ | 2 | 75 |
| MIMAT0014781 | api-miR-3043 | 8 | ......__ | 3 | 75 |
| MIMAT0014582 | tgu-miR-365-3p | 1 | _......_ | 6 | 75 |
| MIMAT0013904 | ssc-miR-365-3p | 1 | _......_ | 6 | 75 |
| MIMAT0013038 | eca-miR-365 | 1 | _......_ | 6 | 75 |
| MIMAT0012887 | eca-miR-1179 | 7 | __...... | 2 | 75 |
| MIMAT0013355 | mtr-miR2592n | 2 | __...... | 7 | 75 |
| MIMAT0013354 | mtr-miR2592m | 2 | __...... | 7 | 75 |
| MIMAT0013353 | mtr-miR2592l | 2 | __...... | 7 | 75 |
| MIMAT0013352 | mtr-miR2592k | 2 | __...... | 7 | 75 |
| MIMAT0013351 | mtr-miR2592h | 2 | __...... | 7 | 75 |
| MIMAT0013350 | mtr-miR2592g | 2 | __...... | 7 | 75 |
| MIMAT0013349 | mtr-miR2592a.2-3p | 2 | __...... | 7 | 75 |
| MIMAT0013279 | mtr-miR2592s-3p | 2 | __...... | 7 | 75 |
| MIMAT0013278 | mtr-miR2592r | 2 | __...... | 7 | 75 |
| MIMAT0013277 | mtr-miR2592q-3p | 2 | __...... | 7 | 75 |
| MIMAT0013276 | mtr-miR2592p | 2 | __...... | 7 | 75 |
| MIMAT0013275 | mtr-miR2592o-3p | 2 | __...... | 7 | 75 |
| MIMAT0013274 | mtr-miR2592j | 2 | __...... | 7 | 75 |
| MIMAT0013273 | mtr-miR2592i | 2 | __...... | 7 | 75 |
| MIMAT0013272 | mtr-miR2592f | 2 | __...... | 7 | 75 |
| MIMAT0013271 | mtr-miR2592e-3p | 2 | __...... | 7 | 75 |
| MIMAT0013270 | mtr-miR2592d-3p | 2 | __...... | 7 | 75 |
| MIMAT0013269 | mtr-miR2592c | 2 | __...... | 7 | 75 |
| MIMAT0013268 | mtr-miR2592b-3p | 2 | __...... | 7 | 75 |
| MIMAT0011503 | crm-miR-786 | 1 | _......_ | 6 | 75 |
| MIMAT0010085 | gma-miR2108b | 1 | ......__ | 6 | 75 |
| MIMAT0010084 | gma-miR2108a | 1 | ......__ | 6 | 75 |
| MIMAT0010050 | osa-miR2093-5p | 8 | _......_ | 3 | 75 |
| MIMAT0009957 | bta-miR-1179 | 7 | __...... | 2 | 75 |
| MIMAT0009791 | nve-miR-2034-3p | 3 | _......_ | 8 | 75 |
| MIMAT0009643 | sko-miR-365-3p | 1 | _......_ | 6 | 75 |
| MIMAT0017348 | mmu-miR-1955-3p | 7 | __...... | 2 | 75 |
| MIMAT0009114 | dya-miR-263a | 2 | ......__ | 7 | 75 |
| MIMAT0009039 | dwi-miR-263a | 2 | ......__ | 7 | 75 |
| MIMAT0008851 | dsi-miR-263a | 2 | ......__ | 7 | 75 |
| MIMAT0008768 | dse-miR-263a | 2 | ......__ | 7 | 75 |
| MIMAT0008761 | dpe-miR-263a | 2 | ......__ | 7 | 75 |
| MIMAT0008653 | dmo-miR-263a | 2 | ......__ | 7 | 75 |
| MIMAT0008621 | dgr-miR-263a | 2 | ......__ | 7 | 75 |
| MIMAT0008506 | der-miR-263a | 2 | ......__ | 7 | 75 |
| MIMAT0008443 | dan-miR-263a | 2 | ......__ | 7 | 75 |
| MIMAT0008247 | ptr-miR-569 | 3 | ......__ | 8 | 75 |
| MIMAT0008117 | ptr-miR-365 | 1 | _......_ | 6 | 75 |
| MIMAT0007948 | ptr-miR-1179 | 7 | __...... | 2 | 75 |
| MIMAT0006432 | mml-miR-569 | 3 | ......__ | 8 | 75 |
| MIMAT0006291 | mml-miR-365-3p | 1 | _......_ | 6 | 75 |
| MIMAT0007083 | oan-miR-1421r-3p | 7 | _......_ | 2 | 75 |
| MIMAT0006823 | oan-miR-365-3p | 1 | _......_ | 6 | 75 |
| MIMAT0005824 | hsa-miR-1179 | 7 | __...... | 2 | 75 |
| MIMAT0017273 | mmu-miR-421-5p | 8 | ......__ | 3 | 75 |
| MIMAT0004341 | bta-miR-365-3p | 1 | _......_ | 6 | 75 |
| MIMAT0004287 | cbr-miR-786 | 1 | _......_ | 6 | 75 |
| MIMAT0004137 | mdo-miR-365-3p | 1 | _......_ | 6 | 75 |
| MIMAT0004221 | cel-miR-786-3p | 1 | _......_ | 6 | 75 |
| MIMAT0012090 | sme-miR-1a-5p | 6 | __...... | 1 | 75 |
| MIMAT0003637 | xtr-miR-365 | 1 | _......_ | 6 | 75 |
| MIMAT0003361 | gga-miR-365-3p | 1 | _......_ | 6 | 75 |
| MIMAT0003234 | hsa-miR-569 | 3 | ......__ | 8 | 75 |
| MIMAT0002968 | tni-miR-365 | 1 | _......_ | 6 | 75 |
| MIMAT0002967 | fru-miR-365 | 1 | _......_ | 6 | 75 |
| MIMAT0001875 | dre-miR-365 | 1 | _......_ | 6 | 75 |
| MIMAT0001549 | rno-miR-365-3p | 1 | _......_ | 6 | 75 |
| MIMAT0001540 | cfa-miR-365 | 1 | _......_ | 6 | 75 |
| MIMAT0001235 | dps-miR-263a | 2 | ......__ | 7 | 75 |
| MIMAT0020344 | cel-miR-392-5p | 6 | __...... | 1 | 75 |
| MIMAT0022834 | hsa-miR-365b-3p | 1 | _......_ | 6 | 75 |
| MIMAT0000711 | mmu-miR-365-3p | 1 | _......_ | 6 | 75 |
| MIMAT0000710 | hsa-miR-365a-3p | 1 | _......_ | 6 | 75 |
