| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ttacagca | 8 | ||
| MIMAT0022683 | hvsa-miR-HSUR5-3p | 1 | ........ | 8 | 100 |
| MIMAT0036059 | chi-miR-214-3p | 1 | _....... | 7 | 87 |
| MIMAT0035078 | efu-miR-214 | 1 | _....... | 7 | 87 |
| MIMAT0034375 | cfa-miR-8875 | 7 | _....... | 1 | 87 |
| MIMAT0032515 | ssa-miR-214-3p | 1 | _....... | 7 | 87 |
| MIMAT0026269 | ccr-miR-214 | 1 | _....... | 7 | 87 |
| MIMAT0023852 | cgr-miR-214-3p | 1 | _....... | 7 | 87 |
| MIMAT0022640 | ola-miR-214 | 2 | _....... | 8 | 87 |
| MIMAT0021017 | hsa-miR-4999-5p | 7 | _....... | 1 | 87 |
| MIMAT0019576 | pma-miR-4545-3p | 1 | _....... | 7 | 87 |
| MIMAT0012299 | dps-miR-2514 | 1 | ......._ | 7 | 87 |
| MIMAT0012225 | dps-miR-971-5p | 7 | ......._ | 1 | 87 |
| MIMAT0026765 | hsa-miR-1537-5p | 8 | ......._ | 2 | 87 |
| MIMAT0020868 | dme-miR-971-5p | 7 | ......._ | 1 | 87 |
| MIMAT0026504 | gga-miR-196-2-3p | 2 | _....... | 8 | 87 |
| MIMAT0034781 | efu-miR-9198c | 8 | .g...... | 1 | 87 |
| MIMAT0034424 | cfa-miR-8904b | 1 | .a...... | 8 | 87 |
| MIMAT0029910 | mmu-miR-7243-5p | 8 | .g...... | 1 | 87 |
| MIMAT0029800 | mmu-miR-7649-5p | 1 | .g...... | 8 | 87 |
| MIMAT0028646 | mdo-miR-7323-5p | 1 | ......a. | 8 | 87 |
| MIMAT0027116 | mml-miR-1243-5p | 8 | ......g. | 1 | 87 |
| MIMAT0021179 | mtr-miR5222 | 1 | ......g. | 8 | 87 |
| MIMAT0016519 | cin-miR-4014-3p | 1 | ......a. | 8 | 87 |
| MIMAT0036920 | oha-miR-383-3p | 3 | __...... | 8 | 75 |
| MIMAT0036806 | oha-miR-20b-3p | 7 | ......__ | 2 | 75 |
| MIMAT0036062 | chi-miR-21-3p | 3 | __...... | 8 | 75 |
| MIMAT0035806 | tae-miR6197-5p | 7 | ......__ | 2 | 75 |
| MIMAT0035461 | sly-miR9473-5p | 8 | _......_ | 3 | 75 |
| MIMAT0035146 | efu-miR-21 | 3 | __...... | 8 | 75 |
| MIMAT0034956 | efu-miR-9295 | 7 | ......__ | 2 | 75 |
| MIMAT0034803 | efu-miR-9212 | 1 | __...... | 6 | 75 |
| MIMAT0034590 | eca-miR-9046 | 6 | __...... | 1 | 75 |
| MIMAT0034495 | eca-miR-8961 | 1 | ......__ | 6 | 75 |
| MIMAT0034372 | cfa-miR-8799f | 6 | __...... | 1 | 75 |
| MIMAT0034335 | cfa-miR-8842 | 6 | __...... | 1 | 75 |
| MIMAT0034316 | cfa-miR-8799b | 6 | __...... | 1 | 75 |
| MIMAT0034237 | gra-miR8785 | 3 | ......__ | 8 | 75 |
| MIMAT0033967 | esi-miR8629 | 3 | __...... | 8 | 75 |
| MIMAT0033239 | ppc-miR-8346-3p | 8 | _......_ | 3 | 75 |
| MIMAT0032521 | ssa-miR-2187-3p | 1 | ......__ | 6 | 75 |
| MIMAT0031713 | bbe-miR-4928-3p | 8 | __...... | 3 | 75 |
| MIMAT0030842 | prd-miR-7970-5p | 1 | __...... | 6 | 75 |
| MIMAT0029827 | mmu-miR-7660-3p | 8 | ......__ | 3 | 75 |
| MIMAT0029466 | ipu-miR-214 | 1 | __...... | 6 | 75 |
| MIMAT0031146 | aja-miR-3120 | 2 | __...... | 7 | 75 |
| MIMAT0031144 | aja-miR-214 | 1 | __...... | 6 | 75 |
| MIMAT0031140 | aja-miR-21 | 3 | __...... | 8 | 75 |
| MIMAT0028870 | mdo-miR-7389-5p | 6 | _......_ | 1 | 75 |
| MIMAT0028284 | mml-miR-7173-5p | 7 | __...... | 2 | 75 |
| MIMAT0028239 | mml-miR-4766-3p | 1 | __...... | 6 | 75 |
| MIMAT0026401 | sbi-miR5568c-3p | 3 | ......__ | 8 | 75 |
| MIMAT0027835 | mmu-miR-6966-3p | 6 | __...... | 1 | 75 |
| MIMAT0027774 | mmu-miR-6937-5p | 8 | _......_ | 3 | 75 |
| MIMAT0027613 | hsa-miR-6856-3p | 1 | _......_ | 6 | 75 |
| MIMAT0025764 | gga-miR-6663-5p | 8 | __...... | 3 | 75 |
| MIMAT0025616 | gga-miR-6554-3p | 6 | __...... | 1 | 75 |
| MIMAT0025608 | gga-miR-3607-3p | 6 | ......__ | 1 | 75 |
| MIMAT0025465 | hsa-miR-6504-3p | 3 | ......__ | 8 | 75 |
| MIMAT0027298 | ppe-miR6272 | 8 | _......_ | 3 | 75 |
| MIMAT0024798 | hvu-miR1130 | 7 | ......__ | 2 | 75 |
| MIMAT0024572 | bta-miR-3120 | 2 | __...... | 7 | 75 |
| MIMAT0024202 | ggo-miR-582 | 1 | ......__ | 6 | 75 |
| MIMAT0026459 | hhv6b-miR-Ro6-2-3p | 1 | ......__ | 6 | 75 |
| MIMAT0023062 | tur-miR-5732-5p | 2 | _......_ | 7 | 75 |
| MIMAT0022346 | cin-miR-5609-3p | 2 | ......__ | 7 | 75 |
| MIMAT0021953 | aca-miR-383-3p | 2 | __...... | 7 | 75 |
| MIMAT0021872 | aca-miR-214-3p | 1 | __...... | 6 | 75 |
| MIMAT0021864 | aca-miR-20b-3p | 7 | ......__ | 2 | 75 |
| MIMAT0021408 | rmi-miR-5335 | 7 | __...... | 2 | 75 |
| MIMAT0027097 | bdi-miR529-3p | 6 | _......_ | 1 | 75 |
| MIMAT0020600 | hsa-miR-5095 | 1 | ......__ | 6 | 75 |
| MIMAT0021053 | gma-miR5033 | 7 | _......_ | 2 | 75 |
| MIMAT0020117 | bfl-miR-4928 | 8 | __...... | 3 | 75 |
| MIMAT0019831 | hsa-miR-4718 | 7 | _......_ | 2 | 75 |
| MIMAT0019659 | pma-miR-4625 | 8 | __...... | 3 | 75 |
| MIMAT0019503 | pma-miR-196a-3p | 3 | __...... | 8 | 75 |
| MIMAT0018306 | gma-miR4343b | 3 | ......__ | 8 | 75 |
| MIMAT0018900 | tca-miR-3898-5p | 6 | _......_ | 1 | 75 |
| MIMAT0018840 | tca-miR-3874-5p | 8 | __...... | 3 | 75 |
| MIMAT0018114 | hsa-miR-3686 | 8 | ......__ | 3 | 75 |
| MIMAT0017985 | hsa-miR-3607-3p | 7 | ......__ | 2 | 75 |
| MIMAT0017972 | ssc-miR-383 | 3 | __...... | 8 | 75 |
| MIMAT0016660 | cin-miR-4085-3p | 6 | __...... | 1 | 75 |
| MIMAT0016613 | cin-miR-4062-3p | 8 | __...... | 3 | 75 |
| MIMAT0016524 | cin-miR-4017-5p | 8 | __...... | 3 | 75 |
| MIMAT0017900 | rno-miR-3120 | 2 | __...... | 7 | 75 |
| MIMAT0017836 | rno-miR-9b-3p | 2 | _......_ | 7 | 75 |
| MIMAT0016042 | ppy-miR-600 | 3 | ......__ | 8 | 75 |
| MIMAT0016024 | ppy-miR-582-5p | 1 | ......__ | 6 | 75 |
| MIMAT0015605 | bmo-miR-3401 | 2 | ......__ | 7 | 75 |
| MIMAT0014982 | hsa-miR-3120-3p | 2 | __...... | 7 | 75 |
| MIMAT0014603 | tgu-miR-214-3p | 1 | __...... | 6 | 75 |
| MIMAT0027017 | tgu-miR-20b-3p | 7 | ......__ | 2 | 75 |
| MIMAT0026989 | tgu-miR-383-3p | 3 | __...... | 8 | 75 |
| MIMAT0015364 | zma-miR529-3p | 6 | _......_ | 1 | 75 |
| MIMAT0017379 | ssc-miR-196b-3p | 3 | __...... | 8 | 75 |
| MIMAT0013825 | osa-miR2875 | 3 | ......__ | 8 | 75 |
| MIMAT0013800 | bmo-miR-2860 | 7 | _......_ | 2 | 75 |
| MIMAT0013103 | eca-miR-582-5p | 1 | ......__ | 6 | 75 |
| MIMAT0012963 | eca-miR-214 | 1 | __...... | 6 | 75 |
| MIMAT0012385 | dps-miR-2561-3p | 2 | __...... | 7 | 75 |
| MIMAT0012335 | dps-miR-2539-3p | 3 | _......_ | 8 | 75 |
| MIMAT0012033 | bta-miR-2452 | 7 | __...... | 2 | 75 |
| MIMAT0011867 | bta-miR-2334 | 1 | __...... | 6 | 75 |
| MIMAT0011445 | cel-miR-2215-5p | 1 | __...... | 6 | 75 |
| MIMAT0011442 | cel-miR-2213-3p | 8 | _......_ | 3 | 75 |
| MIMAT0011297 | dre-miR-2187-3p | 1 | ......__ | 6 | 75 |
| MIMAT0011284 | sme-miR-2181 | 8 | __...... | 3 | 75 |
| MIMAT0009979 | hsa-miR-2054 | 6 | ......__ | 1 | 75 |
| MIMAT0009847 | cfa-miR-214 | 1 | __...... | 6 | 75 |
| MIMAT0009691 | aqu-miR-2016-3p | 6 | __...... | 1 | 75 |
| MIMAT0009351 | bta-miR-582 | 1 | ......__ | 6 | 75 |
| MIMAT0008269 | ptr-miR-600 | 3 | ......__ | 8 | 75 |
| MIMAT0007751 | gga-miR-214 | 1 | __...... | 6 | 75 |
| MIMAT0006457 | mml-miR-600 | 3 | ......__ | 8 | 75 |
| MIMAT0006443 | mml-miR-582-5p | 1 | ......__ | 6 | 75 |
| MIMAT0026840 | mml-miR-196b-3p | 3 | __...... | 8 | 75 |
| MIMAT0007596 | gga-miR-1704 | 1 | __...... | 6 | 75 |
| MIMAT0007588 | gga-miR-1696 | 7 | __...... | 2 | 75 |
| MIMAT0007552 | gga-miR-1668-3p | 6 | __...... | 1 | 75 |
| MIMAT0007500 | gga-miR-1629 | 6 | __...... | 1 | 75 |
| MIMAT0007415 | gga-miR-1558 | 7 | __...... | 2 | 75 |
| MIMAT0006061 | odi-miR-1501 | 8 | __...... | 3 | 75 |
| MIMAT0007342 | gga-miR-1464 | 6 | __...... | 1 | 75 |
| MIMAT0007171 | oan-miR-214-3p | 1 | __...... | 6 | 75 |
| MIMAT0007161 | oan-miR-21-3p | 3 | __...... | 8 | 75 |
| MIMAT0007140 | oan-miR-196b-3p | 3 | __...... | 8 | 75 |
| MIMAT0006869 | oan-miR-1340-3p | 6 | __...... | 1 | 75 |
| MIMAT0006854 | oan-miR-20b-3p | 7 | ......__ | 2 | 75 |
| MIMAT0005032 | cel-miR-1019-3p | 6 | ......__ | 1 | 75 |
| MIMAT0022937 | cgr-miR-21-3p | 3 | __...... | 8 | 75 |
| MIMAT0004382 | ppt-miR898a-5p | 7 | __...... | 2 | 75 |
| MIMAT0004381 | ppt-miR898b | 7 | __...... | 2 | 75 |
| MIMAT0004130 | mdo-miR-214-3p | 1 | __...... | 6 | 75 |
| MIMAT0026650 | mdo-miR-21-3p | 2 | __...... | 7 | 75 |
| MIMAT0003825 | bta-miR-214 | 1 | __...... | 6 | 75 |
| MIMAT0003627 | xtr-miR-214 | 1 | __...... | 6 | 75 |
| MIMAT0003745 | bta-miR-21-3p | 2 | __...... | 7 | 75 |
| MIMAT0003461 | mmu-miR-683 | 8 | __...... | 3 | 75 |
| MIMAT0026631 | gga-miR-383-3p | 3 | __...... | 8 | 75 |
| MIMAT0003268 | hsa-miR-600 | 3 | ......__ | 8 | 75 |
| MIMAT0003247 | hsa-miR-582-5p | 1 | ......__ | 6 | 75 |
| MIMAT0017197 | rno-miR-383-3p | 3 | __...... | 8 | 75 |
| MIMAT0003027 | tni-miR-214 | 1 | __...... | 6 | 75 |
| MIMAT0003026 | fru-miR-214 | 1 | __...... | 6 | 75 |
| MIMAT0002557 | mne-miR-214 | 1 | __...... | 6 | 75 |
| MIMAT0002556 | sla-miR-214 | 1 | __...... | 6 | 75 |
| MIMAT0002555 | mml-miR-214-3p | 1 | __...... | 6 | 75 |
| MIMAT0002554 | ptr-miR-214 | 1 | __...... | 6 | 75 |
| MIMAT0002553 | ppy-miR-214 | 1 | __...... | 6 | 75 |
| MIMAT0002552 | ppa-miR-214 | 1 | __...... | 6 | 75 |
| MIMAT0002551 | age-miR-214 | 1 | __...... | 6 | 75 |
| MIMAT0002550 | ggo-miR-214 | 1 | __...... | 6 | 75 |
| MIMAT0002182 | kshv-miR-K12-1-5p | 2 | ......__ | 7 | 75 |
| MIMAT0002147 | ssc-miR-214 | 1 | __...... | 6 | 75 |
| MIMAT0002070 | ptc-miR475d-3p | 1 | ......__ | 6 | 75 |
| MIMAT0002068 | ptc-miR475b-3p | 1 | ......__ | 6 | 75 |
| MIMAT0002067 | ptc-miR475a-3p | 1 | ......__ | 6 | 75 |
| MIMAT0026551 | gga-miR-20b-3p | 7 | ......__ | 2 | 75 |
| MIMAT0001283 | dre-miR-214 | 1 | __...... | 6 | 75 |
| MIMAT0000885 | rno-miR-214-3p | 1 | __...... | 6 | 75 |
| MIMAT0004711 | rno-miR-21-3p | 3 | __...... | 8 | 75 |
| MIMAT0017082 | mmu-miR-383-3p | 3 | __...... | 8 | 75 |
| MIMAT0026485 | hsa-miR-383-3p | 1 | __...... | 6 | 75 |
| MIMAT0000661 | mmu-miR-214-3p | 1 | __...... | 6 | 75 |
| MIMAT0004628 | mmu-miR-21a-3p | 3 | __...... | 8 | 75 |
| MIMAT0000271 | hsa-miR-214-3p | 1 | __...... | 6 | 75 |
