| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ttagaagt | 8 | ||
| MIMAT0033663 | sma-miR-8472-5p | 2 | ......._ | 8 | 87 |
| MIMAT0033023 | ppc-miR-8268-3p | 8 | ......._ | 2 | 87 |
| MIMAT0021058 | gma-miR5035-5p | 7 | ......._ | 1 | 87 |
| MIMAT0034197 | gra-miR8674b | 1 | ......a. | 8 | 87 |
| MIMAT0032666 | ssa-miR-7132a-3p | 1 | .g...... | 8 | 87 |
| MIMAT0031615 | bbe-miR-2058-5p | 1 | .g...... | 8 | 87 |
| MIMAT0031613 | bbe-miR-2057-5p | 1 | .g...... | 8 | 87 |
| MIMAT0030108 | bdi-miR5181c-3p | 8 | .a...... | 1 | 87 |
| MIMAT0028995 | oan-miR-7422a-3p | 8 | .c...... | 1 | 87 |
| MIMAT0009984 | bfl-miR-2058-5p | 1 | .g...... | 8 | 87 |
| MIMAT0009983 | bfl-miR-2057 | 1 | .g...... | 8 | 87 |
| MIMAT0007721 | gga-miR-1804 | 1 | .c...... | 8 | 87 |
| MIMAT0037006 | ssc-miR-9789-3p | 7 | ......__ | 2 | 75 |
| MIMAT0035680 | bra-miR9555b-3p | 1 | ......__ | 6 | 75 |
| MIMAT0035663 | bra-miR9555a-5p | 6 | ......__ | 1 | 75 |
| MIMAT0035583 | dvi-miR-964-5p | 1 | ......__ | 6 | 75 |
| MIMAT0035570 | dvi-miR-927-5p | 2 | ......__ | 7 | 75 |
| MIMAT0035463 | sly-miR9474-5p | 3 | _......_ | 8 | 75 |
| MIMAT0035101 | efu-miR-9338 | 1 | __...... | 6 | 75 |
| MIMAT0034374 | cfa-miR-8874 | 7 | __...... | 2 | 75 |
| MIMAT0034196 | gra-miR8674a | 1 | ......__ | 6 | 75 |
| MIMAT0034055 | gra-miR7484c | 1 | __...... | 6 | 75 |
| MIMAT0033966 | esi-miR8628 | 3 | _......_ | 8 | 75 |
| MIMAT0033446 | str-miR-240-5p | 1 | __...... | 6 | 75 |
| MIMAT0032812 | cel-miR-8199-3p | 2 | _......_ | 7 | 75 |
| MIMAT0030714 | prd-miR-35a-5p | 7 | __...... | 2 | 75 |
| MIMAT0032249 | rgl-miR7806 | 1 | _......_ | 6 | 75 |
| MIMAT0030161 | bdi-miR7719-3p | 1 | _......_ | 6 | 75 |
| MIMAT0030127 | bdi-miR5185l-5p | 6 | ......__ | 1 | 75 |
| MIMAT0029371 | lja-miR7544 | 1 | ......__ | 6 | 75 |
| MIMAT0029160 | ghr-miR7511 | 1 | __...... | 6 | 75 |
| MIMAT0028863 | mdo-miR-7386m-3p | 3 | __...... | 8 | 75 |
| MIMAT0028849 | mdo-miR-7386k-3p | 3 | __...... | 8 | 75 |
| MIMAT0028419 | mmu-miR-7225-3p | 6 | _......_ | 1 | 75 |
| MIMAT0028256 | mml-miR-548h-5p | 1 | __...... | 6 | 75 |
| MIMAT0028249 | mml-miR-6505-3p | 8 | __...... | 3 | 75 |
| MIMAT0028065 | mmu-miR-7079-3p | 8 | __...... | 3 | 75 |
| MIMAT0027980 | mmu-miR-7038-5p | 3 | _......_ | 8 | 75 |
| MIMAT0025724 | gga-miR-6628-3p | 2 | __...... | 7 | 75 |
| MIMAT0025683 | gga-miR-6590-3p | 8 | __...... | 3 | 75 |
| MIMAT0025467 | hsa-miR-6505-3p | 8 | __...... | 3 | 75 |
| MIMAT0024990 | hme-miR-927 | 2 | ......__ | 7 | 75 |
| MIMAT0027319 | ppe-miR6287 | 3 | __...... | 8 | 75 |
| MIMAT0024536 | cca-miR6103-3p | 3 | __...... | 8 | 75 |
| MIMAT0023579 | tca-miR-927b-5p | 2 | ......__ | 7 | 75 |
| MIMAT0022478 | hsa-miR-5687 | 1 | ......__ | 6 | 75 |
| MIMAT0022474 | hsa-miR-548ax | 1 | __...... | 6 | 75 |
| MIMAT0023001 | rgl-miR5576 | 1 | __...... | 6 | 75 |
| MIMAT0022043 | aca-miR-5423 | 3 | _......_ | 8 | 75 |
| MIMAT0021548 | asu-miR-5348-5p | 2 | __...... | 7 | 75 |
| MIMAT0020733 | bdi-miR5184 | 6 | ......__ | 1 | 75 |
| MIMAT0021110 | osa-miR5157b-3p | 1 | __...... | 6 | 75 |
| MIMAT0021108 | osa-miR5157a-3p | 1 | __...... | 6 | 75 |
| MIMAT0021029 | hsa-miR-548ao-5p | 1 | __...... | 6 | 75 |
| MIMAT0021014 | gma-miR4996 | 1 | _......_ | 6 | 75 |
| MIMAT0021010 | gma-miR4992 | 7 | ......__ | 2 | 75 |
| MIMAT0019968 | hsa-miR-4795-5p | 1 | __...... | 6 | 75 |
| MIMAT0019591 | pma-miR-4559 | 7 | _......_ | 2 | 75 |
| MIMAT0019273 | oar-miR-495-5p | 1 | __...... | 6 | 75 |
| MIMAT0018438 | nlo-miR-927 | 3 | ......__ | 8 | 75 |
| MIMAT0018394 | ngi-miR-927 | 3 | ......__ | 8 | 75 |
| MIMAT0018324 | gma-miR4405 | 7 | ......__ | 2 | 75 |
| MIMAT0018576 | ame-miR-927b | 3 | ......__ | 8 | 75 |
| MIMAT0019222 | hsa-miR-3682-5p | 8 | __...... | 3 | 75 |
| MIMAT0016898 | hsa-miR-4263 | 7 | ......__ | 2 | 75 |
| MIMAT0016017 | ppy-miR-576-5p | 7 | ......__ | 2 | 75 |
| MIMAT0015700 | nvi-miR-927 | 3 | ......__ | 8 | 75 |
| MIMAT0017719 | aly-miR3443-5p | 6 | ......__ | 1 | 75 |
| MIMAT0015508 | bmo-miR-3321 | 2 | __...... | 7 | 75 |
| MIMAT0015434 | bmo-miR-3251 | 1 | _......_ | 6 | 75 |
| MIMAT0014740 | api-miR-927 | 2 | ......__ | 7 | 75 |
| MIMAT0014666 | hma-miR-3002 | 1 | _......_ | 6 | 75 |
| MIMAT0012483 | dsi-miR-927-5p | 2 | ......__ | 7 | 75 |
| MIMAT0012475 | dsi-miR-964-5p | 1 | ......__ | 6 | 75 |
| MIMAT0012400 | dps-miR-2566b-5p | 2 | ......__ | 7 | 75 |
| MIMAT0016970 | dps-miR-2566a-2-5p | 2 | ......__ | 7 | 75 |
| MIMAT0012394 | dps-miR-2566a-1-5p | 2 | ......__ | 7 | 75 |
| MIMAT0012269 | dps-miR-927-5p | 2 | ......__ | 7 | 75 |
| MIMAT0012051 | bta-miR-2464-5p | 6 | __...... | 1 | 75 |
| MIMAT0011955 | bta-miR-2399-3p | 6 | ......__ | 1 | 75 |
| MIMAT0011792 | bta-miR-2284i | 2 | __...... | 7 | 75 |
| MIMAT0011667 | ppc-miR-2252 | 8 | _......_ | 3 | 75 |
| MIMAT0010102 | aga-miR-927 | 2 | ......__ | 7 | 75 |
| MIMAT0009756 | nve-miR-2023-3p | 3 | __...... | 8 | 75 |
| MIMAT0009157 | bmo-miR-927-5p | 2 | ......__ | 7 | 75 |
| MIMAT0008415 | dan-miR-284 | 1 | __...... | 6 | 75 |
| MIMAT0008391 | tca-miR-927a-5p | 2 | ......__ | 7 | 75 |
| MIMAT0006492 | mml-miR-651 | 2 | ......__ | 7 | 75 |
| MIMAT0006436 | mml-miR-576-5p | 7 | ......__ | 2 | 75 |
| MIMAT0005552 | mcmv-miR-m88-1-3p | 2 | __...... | 7 | 75 |
| MIMAT0005248 | smo-miR1094b | 7 | __...... | 2 | 75 |
| MIMAT0005247 | smo-miR1094a | 7 | __...... | 2 | 75 |
| MIMAT0005501 | dme-miR-927-5p | 2 | ......__ | 7 | 75 |
| MIMAT0005478 | dme-miR-964-5p | 1 | ......__ | 6 | 75 |
| MIMAT0004438 | ame-miR-927a | 3 | ......__ | 8 | 75 |
| MIMAT0003986 | sme-miR-71b-3p | 8 | _......_ | 3 | 75 |
| MIMAT0003241 | hsa-miR-576-5p | 7 | ......__ | 2 | 75 |
