| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ttagatgc | 8 | ||
| MIMAT0004468 | mdv2-miR-M24-3p | 1 | ........ | 8 | 100 |
| MIMAT0031516 | ppe-miR827 | 1 | ......._ | 7 | 87 |
| MIMAT0031273 | stu-miR827-3p | 1 | ......._ | 7 | 87 |
| MIMAT0030226 | bdi-miR7743-5p | 8 | _....... | 2 | 87 |
| MIMAT0029302 | mes-miR827 | 1 | ......._ | 7 | 87 |
| MIMAT0026028 | mdm-miR827 | 1 | ......._ | 7 | 87 |
| MIMAT0024725 | nta-miR827 | 1 | ......._ | 7 | 87 |
| MIMAT0020279 | ssp-miR827 | 1 | ......._ | 7 | 87 |
| MIMAT0020703 | bdi-miR827-3p | 1 | ......._ | 7 | 87 |
| MIMAT0020449 | tcc-miR827 | 1 | ......._ | 7 | 87 |
| MIMAT0018485 | csi-miR827 | 1 | ......._ | 7 | 87 |
| MIMAT0017608 | aly-miR827-3p | 1 | ......._ | 7 | 87 |
| MIMAT0014343 | ghr-miR827c | 1 | ......._ | 7 | 87 |
| MIMAT0014342 | ghr-miR827b | 1 | ......._ | 7 | 87 |
| MIMAT0014341 | ghr-miR827a | 1 | ......._ | 7 | 87 |
| MIMAT0014031 | zma-miR827-3p | 1 | ......._ | 7 | 87 |
| MIMAT0009981 | osa-miR827 | 1 | ......._ | 7 | 87 |
| MIMAT0017351 | mmu-miR-1981-3p | 7 | ......._ | 1 | 87 |
| MIMAT0006003 | ptc-miR827 | 1 | ......._ | 7 | 87 |
| MIMAT0004243 | ath-miR827 | 1 | ......._ | 7 | 87 |
| MIMAT0035859 | bra-miR403-3p | 1 | ......t. | 8 | 87 |
| MIMAT0035647 | dvi-miR-975-5p | 1 | ......a. | 8 | 87 |
| MIMAT0033547 | sma-miR-8421-3p | 8 | ......c. | 1 | 87 |
| MIMAT0031511 | ppe-miR403 | 1 | ......t. | 8 | 87 |
| MIMAT0031387 | aly-miR403b-3p | 1 | ......t. | 8 | 87 |
| MIMAT0030370 | ptc-miR403d | 1 | ......t. | 8 | 87 |
| MIMAT0029287 | mes-miR403b | 1 | ......t. | 8 | 87 |
| MIMAT0029286 | mes-miR403a | 1 | ......t. | 8 | 87 |
| MIMAT0026012 | mdm-miR403b | 1 | ......t. | 8 | 87 |
| MIMAT0026011 | mdm-miR403a | 1 | ......t. | 8 | 87 |
| MIMAT0025520 | hpe-miR403a | 1 | ......t. | 8 | 87 |
| MIMAT0025519 | har-miR403a | 1 | ......t. | 8 | 87 |
| MIMAT0025518 | htu-miR403e | 1 | ......t. | 8 | 87 |
| MIMAT0025517 | htu-miR403d | 1 | ......t. | 8 | 87 |
| MIMAT0025516 | htu-miR403c | 1 | ......t. | 8 | 87 |
| MIMAT0025515 | htu-miR403b | 1 | ......t. | 8 | 87 |
| MIMAT0025514 | htu-miR403a | 1 | ......t. | 8 | 87 |
| MIMAT0023644 | bna-miR403 | 1 | ......t. | 8 | 87 |
| MIMAT0021614 | gma-miR403b | 1 | ......t. | 8 | 87 |
| MIMAT0021613 | gma-miR403a | 1 | ......t. | 8 | 87 |
| MIMAT0020445 | tcc-miR403b | 1 | ......t. | 8 | 87 |
| MIMAT0020444 | tcc-miR403a | 1 | ......t. | 8 | 87 |
| MIMAT0018471 | csi-miR403 | 1 | ......t. | 8 | 87 |
| MIMAT0018141 | pab-miR3709a | 1 | .c...... | 8 | 87 |
| MIMAT0017586 | aly-miR403a-3p | 1 | ......t. | 8 | 87 |
| MIMAT0014203 | rco-miR403b | 1 | ......t. | 8 | 87 |
| MIMAT0014202 | rco-miR403a | 1 | ......t. | 8 | 87 |
| MIMAT0006574 | vvi-miR403f | 1 | ......t. | 8 | 87 |
| MIMAT0006573 | vvi-miR403e | 1 | ......t. | 8 | 87 |
| MIMAT0006572 | vvi-miR403d | 1 | ......t. | 8 | 87 |
| MIMAT0006571 | vvi-miR403c | 1 | ......t. | 8 | 87 |
| MIMAT0006570 | vvi-miR403b | 1 | ......t. | 8 | 87 |
| MIMAT0006569 | vvi-miR403a | 1 | ......t. | 8 | 87 |
| MIMAT0003944 | ptc-miR403c-3p | 1 | ......t. | 8 | 87 |
| MIMAT0002057 | ptc-miR403b | 1 | ......t. | 8 | 87 |
| MIMAT0002056 | ptc-miR403a | 1 | ......t. | 8 | 87 |
| MIMAT0001004 | ath-miR403-3p | 1 | ......t. | 8 | 87 |
| MIMAT0036547 | tch-miR-9771h | 1 | __...... | 6 | 75 |
| MIMAT0036291 | chi-miR-708-3p | 6 | _......_ | 1 | 75 |
| MIMAT0035343 | gsa-miR-9398-3p | 2 | ......__ | 7 | 75 |
| MIMAT0034198 | gra-miR8764 | 1 | ......__ | 6 | 75 |
| MIMAT0034157 | gra-miR7484f | 7 | ......__ | 2 | 75 |
| MIMAT0033879 | atr-miR8592 | 6 | ......__ | 1 | 75 |
| MIMAT0033564 | sma-miR-8430-5p | 7 | ......__ | 2 | 75 |
| MIMAT0033360 | str-miR-8370-5p | 1 | __...... | 6 | 75 |
| MIMAT0032687 | ssa-miR-737-3p | 7 | ......__ | 2 | 75 |
| MIMAT0031288 | stu-miR172c-5p | 7 | __...... | 2 | 75 |
| MIMAT0030988 | hsa-miR-8061 | 2 | ......__ | 7 | 75 |
| MIMAT0030214 | bdi-miR7739-5p | 1 | __...... | 6 | 75 |
| MIMAT0029113 | gga-miR-7479-3p | 2 | _......_ | 7 | 75 |
| MIMAT0028632 | mdo-miR-7316-5p | 3 | __...... | 8 | 75 |
| MIMAT0026372 | bma-miR-5873 | 1 | _......_ | 6 | 75 |
| MIMAT0027352 | cln-miR6725 | 8 | __...... | 3 | 75 |
| MIMAT0023478 | hco-miR-5971 | 2 | _......_ | 7 | 75 |
| MIMAT0022141 | osa-miR5508 | 1 | _......_ | 6 | 75 |
| MIMAT0021385 | isc-miR-5314 | 3 | _......_ | 8 | 75 |
| MIMAT0027081 | bdi-miR5173-3p | 7 | __...... | 2 | 75 |
| MIMAT0020606 | mmu-miR-5099 | 1 | ......__ | 6 | 75 |
| MIMAT0019976 | hsa-miR-4799-5p | 6 | ......__ | 1 | 75 |
| MIMAT0019906 | hsa-miR-4760-5p | 2 | ......__ | 7 | 75 |
| MIMAT0019809 | hsa-miR-4708-5p | 3 | __...... | 8 | 75 |
| MIMAT0016804 | cin-miR-4186-5p | 2 | _......_ | 7 | 75 |
| MIMAT0016735 | cin-miR-4138-5p | 1 | _......_ | 6 | 75 |
| MIMAT0016694 | cin-miR-4107-5p | 8 | ......__ | 3 | 75 |
| MIMAT0017902 | rno-miR-741-3p | 3 | __...... | 8 | 75 |
| MIMAT0016960 | rlcv-miR-rL1-34-5p | 1 | _......_ | 6 | 75 |
| MIMAT0016332 | ahy-miR3509-3p | 6 | ......__ | 1 | 75 |
| MIMAT0017610 | aly-miR828-3p | 1 | __...... | 6 | 75 |
| MIMAT0017575 | aly-miR399c-5p | 8 | __...... | 3 | 75 |
| MIMAT0014900 | mmu-miR-3089-3p | 7 | __...... | 2 | 75 |
| MIMAT0019186 | rlcv-miR-rL1-18-5p | 1 | _......_ | 6 | 75 |
| MIMAT0013266 | mtr-miR2590f | 6 | ......__ | 1 | 75 |
| MIMAT0013265 | mtr-miR2590e | 6 | ......__ | 1 | 75 |
| MIMAT0013264 | mtr-miR2590d | 6 | ......__ | 1 | 75 |
| MIMAT0013263 | mtr-miR2590c | 6 | ......__ | 1 | 75 |
| MIMAT0013262 | mtr-miR2590b | 6 | ......__ | 1 | 75 |
| MIMAT0013261 | mtr-miR2590a | 6 | ......__ | 1 | 75 |
| MIMAT0012341 | dps-miR-2542-3p | 1 | _......_ | 6 | 75 |
| MIMAT0012282 | dps-miR-3983 | 1 | __...... | 6 | 75 |
| MIMAT0007418 | gga-miR-1560-3p | 6 | __...... | 1 | 75 |
| MIMAT0007036 | oan-miR-1371 | 1 | _......_ | 6 | 75 |
| MIMAT0006861 | oan-miR-1339-5p | 1 | __...... | 6 | 75 |
| MIMAT0005373 | tae-miR1138 | 3 | ......__ | 8 | 75 |
| MIMAT0005120 | ppt-miR1028c-5p | 3 | ......__ | 8 | 75 |
| MIMAT0005118 | ppt-miR1028b-5p | 3 | ......__ | 8 | 75 |
| MIMAT0005116 | ppt-miR1028a-5p | 3 | ......__ | 8 | 75 |
| MIMAT0012540 | mdv2-miR-M16-3p | 1 | __...... | 6 | 75 |
| MIMAT0003714 | ebv-miR-BART16 | 1 | ......__ | 6 | 75 |
| MIMAT0003457 | mmu-miR-680 | 8 | __...... | 3 | 75 |
| MIMAT0031913 | ath-miR399c-5p | 8 | __...... | 3 | 75 |
