| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ttagggcg | 8 | ||
| MIMAT0014690 | hsv1-miR-H13 | 1 | ........ | 8 | 100 |
| MIMAT0035938 | chi-miR-1296 | 1 | ......._ | 7 | 87 |
| MIMAT0034413 | cfa-miR-1296 | 1 | ......._ | 7 | 87 |
| MIMAT0028797 | mdo-miR-7375-3p | 1 | _....... | 7 | 87 |
| MIMAT0024328 | mml-miR-1296-5p | 1 | ......._ | 7 | 87 |
| MIMAT0024172 | ggo-miR-1296 | 1 | ......._ | 7 | 87 |
| MIMAT0022964 | ssc-miR-1296-5p | 1 | ......._ | 7 | 87 |
| MIMAT0016217 | ppy-miR-1296 | 1 | ......._ | 7 | 87 |
| MIMAT0014700 | hsv2-miR-H13 | 1 | ......._ | 7 | 87 |
| MIMAT0013863 | hsa-miR-2909 | 2 | ......._ | 8 | 87 |
| MIMAT0012890 | eca-miR-1296 | 1 | ......._ | 7 | 87 |
| MIMAT0009964 | bta-miR-1296 | 1 | ......._ | 7 | 87 |
| MIMAT0008015 | ptr-miR-1296 | 1 | ......._ | 7 | 87 |
| MIMAT0015270 | osa-miR1870-3p | 2 | ......._ | 8 | 87 |
| MIMAT0005794 | hsa-miR-1296-5p | 1 | ......._ | 7 | 87 |
| MIMAT0004751 | hsa-miR-18b-3p | 8 | ......._ | 2 | 87 |
| MIMAT0004540 | mmu-miR-186-3p | 7 | ......._ | 1 | 87 |
| MIMAT0033903 | atr-miR8611 | 1 | .a...... | 8 | 87 |
| MIMAT0033750 | pxy-miR-929 | 8 | ......a. | 1 | 87 |
| MIMAT0024498 | mse-miR-929a | 8 | ......a. | 1 | 87 |
| MIMAT0015036 | hsa-miR-3162-5p | 1 | ......a. | 8 | 87 |
| MIMAT0012460 | dsi-miR-929-3p | 8 | ......a. | 1 | 87 |
| MIMAT0012268 | dps-miR-929-3p | 8 | ......a. | 1 | 87 |
| MIMAT0010101 | aga-miR-929 | 8 | ......a. | 1 | 87 |
| MIMAT0015289 | bmo-miR-929-3p | 8 | ......a. | 1 | 87 |
| MIMAT0019133 | tca-miR-929-3p | 8 | ......a. | 1 | 87 |
| MIMAT0005511 | dme-miR-929-3p | 8 | ......a. | 1 | 87 |
| MIMAT0037299 | ame-miR-9894 | 2 | __...... | 7 | 75 |
| MIMAT0037198 | ata-miR399b-5p | 2 | __...... | 7 | 75 |
| MIMAT0036998 | tae-miR9677b | 2 | __...... | 7 | 75 |
| MIMAT0035973 | chi-miR-146b-3p | 7 | _......_ | 2 | 75 |
| MIMAT0035921 | chi-miR-1249 | 7 | __...... | 2 | 75 |
| MIMAT0035020 | efu-miR-146 | 7 | _......_ | 2 | 75 |
| MIMAT0034894 | efu-miR-1249 | 7 | __...... | 2 | 75 |
| MIMAT0034732 | eca-miR-9156 | 3 | _......_ | 8 | 75 |
| MIMAT0034563 | eca-miR-1249 | 8 | __...... | 3 | 75 |
| MIMAT0034350 | cfa-miR-8855 | 2 | ......__ | 7 | 75 |
| MIMAT0034321 | cfa-miR-1249 | 7 | __...... | 2 | 75 |
| MIMAT0034081 | gra-miR8700 | 1 | __...... | 6 | 75 |
| MIMAT0032866 | ppc-miR-8218a-5p | 3 | __...... | 8 | 75 |
| MIMAT0032635 | ssa-miR-430c-5p | 8 | ......__ | 3 | 75 |
| MIMAT0032435 | ssa-miR-18b-3p | 8 | _......_ | 3 | 75 |
| MIMAT0029905 | mmu-miR-1258-3p | 1 | ......__ | 6 | 75 |
| MIMAT0029341 | lja-miR7525 | 1 | __...... | 6 | 75 |
| MIMAT0028434 | mmu-miR-7233-5p | 3 | ......__ | 8 | 75 |
| MIMAT0028154 | ssc-miR-7139-3p | 1 | _......_ | 6 | 75 |
| MIMAT0027354 | hsa-miR-6726-3p | 8 | __...... | 3 | 75 |
| MIMAT0025385 | ssc-miR-1249 | 7 | __...... | 2 | 75 |
| MIMAT0025303 | mja-miR-6494 | 1 | __...... | 6 | 75 |
| MIMAT0024854 | rno-miR-6215 | 2 | ......__ | 7 | 75 |
| MIMAT0024853 | rno-miR-3473 | 3 | _......_ | 8 | 75 |
| MIMAT0024573 | bta-miR-3141 | 2 | __...... | 7 | 75 |
| MIMAT0024324 | mml-miR-1249 | 7 | __...... | 2 | 75 |
| MIMAT0024247 | ggo-miR-1249 | 7 | __...... | 2 | 75 |
| MIMAT0023776 | cgr-miR-146b-3p | 6 | _......_ | 1 | 75 |
| MIMAT0022388 | ath-miR5629 | 1 | ......__ | 6 | 75 |
| MIMAT0021245 | mtr-miR5249 | 3 | ......__ | 8 | 75 |
| MIMAT0020758 | bdi-miR5201-3p | 1 | __...... | 6 | 75 |
| MIMAT0020456 | bfl-miR-4875b-5p | 2 | _......_ | 7 | 75 |
| MIMAT0019353 | mmu-miR-3969 | 6 | ......__ | 1 | 75 |
| MIMAT0017892 | rno-miR-1249 | 7 | __...... | 2 | 75 |
| MIMAT0016174 | ppy-miR-1249 | 7 | __...... | 2 | 75 |
| MIMAT0019210 | hsa-miR-3157-3p | 8 | _......_ | 3 | 75 |
| MIMAT0015010 | hsa-miR-3141 | 2 | __...... | 7 | 75 |
| MIMAT0014950 | mmu-miR-3109-3p | 1 | _......_ | 6 | 75 |
| MIMAT0014652 | tgu-miR-146b-3p | 7 | _......_ | 2 | 75 |
| MIMAT0013858 | bta-miR-2900 | 1 | __...... | 6 | 75 |
| MIMAT0012892 | eca-miR-146b-3p | 7 | _......_ | 2 | 75 |
| MIMAT0013760 | bmo-miR-2780c | 2 | __...... | 7 | 75 |
| MIMAT0013641 | bmo-miR-2766-5p | 7 | __...... | 2 | 75 |
| MIMAT0011614 | crm-miR-58b-5p | 7 | _......_ | 2 | 75 |
| MIMAT0011545 | crm-miR-58a | 7 | _......_ | 2 | 75 |
| MIMAT0009976 | bta-miR-1249 | 7 | __...... | 2 | 75 |
| MIMAT0009726 | lgi-miR-1984 | 7 | _......_ | 2 | 75 |
| MIMAT0009715 | hru-miR-1984 | 7 | _......_ | 2 | 75 |
| MIMAT0007975 | ptr-miR-1249 | 7 | __...... | 2 | 75 |
| MIMAT0007827 | osa-miR1874-5p | 1 | _......_ | 6 | 75 |
| MIMAT0032035 | cel-miR-1823-5p | 8 | ......__ | 3 | 75 |
| MIMAT0007670 | gga-miR-1763 | 2 | __...... | 7 | 75 |
| MIMAT0007540 | gga-miR-1659 | 1 | _......_ | 6 | 75 |
| MIMAT0007444 | gga-miR-1583 | 3 | _......_ | 8 | 75 |
| MIMAT0007008 | oan-miR-146b-3p | 6 | _......_ | 1 | 75 |
| MIMAT0006832 | oan-miR-1337 | 1 | ......__ | 6 | 75 |
| MIMAT0005901 | hsa-miR-1249-3p | 7 | __...... | 2 | 75 |
| MIMAT0005173 | ppt-miR1055 | 1 | ......__ | 6 | 75 |
| MIMAT0004826 | mmu-miR-146b-3p | 6 | _......_ | 1 | 75 |
| MIMAT0010560 | mmu-miR-1249-3p | 7 | __...... | 2 | 75 |
| MIMAT0003397 | dre-miR-18b-3p | 8 | _......_ | 3 | 75 |
| MIMAT0020836 | dme-miR-310-5p | 1 | __...... | 6 | 75 |
| MIMAT0015100 | cel-miR-58a-5p | 7 | _......_ | 2 | 75 |
