| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ttcaatat | 8 | ||
| MIMAT0029916 | cbr-miR-4813 | 1 | ........ | 8 | 100 |
| MIMAT0020001 | cel-miR-4813-3p | 1 | ........ | 8 | 100 |
| MIMAT0037169 | ata-miR396e-3p | 2 | ......._ | 8 | 87 |
| MIMAT0035456 | sly-miR396a-3p | 2 | ......._ | 8 | 87 |
| MIMAT0034164 | gra-miR8781a | 7 | ......._ | 1 | 87 |
| MIMAT0033743 | pxy-miR-8517a | 7 | ......._ | 1 | 87 |
| MIMAT0033135 | ppc-miR-8305-3p | 8 | ......._ | 2 | 87 |
| MIMAT0027289 | ppe-miR171e | 8 | ......._ | 2 | 87 |
| MIMAT0021670 | gma-miR396i-3p | 2 | ......._ | 8 | 87 |
| MIMAT0027055 | bdi-miR396c-3p | 2 | ......._ | 8 | 87 |
| MIMAT0027051 | bdi-miR396d-3p | 2 | ......._ | 8 | 87 |
| MIMAT0020653 | rgl-miR5142 | 7 | _....... | 1 | 87 |
| MIMAT0017558 | aly-miR396a-3p | 2 | ......._ | 8 | 87 |
| MIMAT0007395 | gma-miR1520c | 1 | ......._ | 7 | 87 |
| MIMAT0026732 | mtr-miR396b-3p | 2 | ......._ | 8 | 87 |
| MIMAT0015168 | zma-miR396a-3p | 2 | ......._ | 8 | 87 |
| MIMAT0015167 | zma-miR396b-3p | 2 | ......._ | 8 | 87 |
| MIMAT0020922 | gma-miR396a-3p | 1 | ......._ | 7 | 87 |
| MIMAT0022864 | osa-miR396b-3p | 2 | ......._ | 8 | 87 |
| MIMAT0022863 | osa-miR396a-3p | 2 | ......._ | 8 | 87 |
| MIMAT0031908 | ath-miR396a-3p | 2 | ......._ | 8 | 87 |
| MIMAT0028733 | mdo-miR-7360-3p | 8 | .a...... | 1 | 87 |
| MIMAT0016677 | cin-miR-4096-3p | 1 | .g...... | 8 | 87 |
| MIMAT0016271 | sja-miR-310 | 8 | .g...... | 1 | 87 |
| MIMAT0031937 | dre-miR-16c-3p | 1 | .c...... | 8 | 87 |
| MIMAT0037054 | ssc-miR-9836-3p | 6 | _......_ | 1 | 75 |
| MIMAT0036747 | oha-miR-16b-3p | 2 | __...... | 7 | 75 |
| MIMAT0036206 | chi-miR-3958-3p | 8 | __...... | 3 | 75 |
| MIMAT0036149 | chi-miR-338-5p | 3 | __...... | 8 | 75 |
| MIMAT0036031 | chi-miR-195-3p | 2 | __...... | 7 | 75 |
| MIMAT0035997 | chi-miR-16b-3p | 3 | __...... | 8 | 75 |
| MIMAT0035861 | bra-miR860-3p | 1 | _......_ | 6 | 75 |
| MIMAT0035706 | mse-miR-9570 | 8 | __...... | 3 | 75 |
| MIMAT0035627 | dvi-miR-9543a-3p | 8 | __...... | 3 | 75 |
| MIMAT0035548 | dvi-miR-1000-5p | 6 | __...... | 1 | 75 |
| MIMAT0035114 | efu-miR-9345 | 1 | ......__ | 6 | 75 |
| MIMAT0034857 | efu-miR-9241 | 6 | ......__ | 1 | 75 |
| MIMAT0034810 | efu-miR-9218 | 6 | ......__ | 1 | 75 |
| MIMAT0033853 | atr-miR8571 | 1 | ......__ | 6 | 75 |
| MIMAT0033604 | sma-miR-8447-5p | 1 | __...... | 6 | 75 |
| MIMAT0033411 | str-miR-84-3p | 1 | __...... | 6 | 75 |
| MIMAT0032616 | ssa-miR-338a-5p | 3 | __...... | 8 | 75 |
| MIMAT0032614 | ssa-miR-338a-3-5p | 3 | __...... | 8 | 75 |
| MIMAT0032411 | ssa-miR-16c-3p | 3 | __...... | 8 | 75 |
| MIMAT0032409 | ssa-miR-16b-3p | 3 | __...... | 8 | 75 |
| MIMAT0031746 | bma-miR-283 | 1 | __...... | 6 | 75 |
| MIMAT0031604 | bbe-miR-190-3p | 3 | __...... | 8 | 75 |
| MIMAT0031301 | stu-miR171d-5p | 8 | __...... | 3 | 75 |
| MIMAT0031247 | stu-miR171b-5p | 8 | __...... | 3 | 75 |
| MIMAT0030887 | stu-miR7997c | 6 | __...... | 1 | 75 |
| MIMAT0030827 | prd-miR-7963-3p | 6 | __...... | 1 | 75 |
| MIMAT0030469 | prd-miR-5359-3p | 2 | __...... | 7 | 75 |
| MIMAT0029326 | lja-miR397 | 6 | _......_ | 1 | 75 |
| MIMAT0031103 | mdo-miR-16-2-3p | 2 | __...... | 7 | 75 |
| MIMAT0028362 | mml-miR-7199-5p | 1 | __...... | 6 | 75 |
| MIMAT0027552 | hsa-miR-6826-5p | 1 | _......_ | 6 | 75 |
| MIMAT0025542 | bta-miR-154c | 8 | __...... | 3 | 75 |
| MIMAT0024933 | hme-miR-1000 | 6 | __...... | 1 | 75 |
| MIMAT0027146 | lus-miR171d | 8 | __...... | 3 | 75 |
| MIMAT0024441 | mse-miR-1000 | 6 | __...... | 1 | 75 |
| MIMAT0023912 | cgr-miR-325-3p | 8 | _......_ | 3 | 75 |
| MIMAT0023645 | bna-miR860 | 1 | _......_ | 6 | 75 |
| MIMAT0023450 | hco-miR-5948 | 3 | _......_ | 8 | 75 |
| MIMAT0032131 | gma-miR171o-5p | 8 | __...... | 3 | 75 |
| MIMAT0022437 | ath-miR5649b | 6 | ......__ | 1 | 75 |
| MIMAT0022415 | ath-miR5649a | 6 | ......__ | 1 | 75 |
| MIMAT0022254 | sbi-miR5565d | 3 | ......__ | 8 | 75 |
| MIMAT0021937 | aca-miR-338-5p | 3 | __...... | 8 | 75 |
| MIMAT0021800 | aca-miR-16a-3p | 2 | __...... | 7 | 75 |
| MIMAT0022991 | gma-miR397b-3p | 6 | _......_ | 1 | 75 |
| MIMAT0021581 | asu-miR-5359-3p | 2 | __...... | 7 | 75 |
| MIMAT0019276 | oar-miR-3958-3p | 8 | __...... | 3 | 75 |
| MIMAT0018334 | gma-miR171c-5p | 8 | __...... | 3 | 75 |
| MIMAT0018659 | tca-miR-3817-3p | 8 | __...... | 3 | 75 |
| MIMAT0018030 | vvi-miR3631a-3p | 7 | __...... | 2 | 75 |
| MIMAT0018016 | vvi-miR3626-3p | 2 | ......__ | 7 | 75 |
| MIMAT0016827 | cin-miR-4206-3p | 6 | ......__ | 1 | 75 |
| MIMAT0016678 | cin-miR-4097-5p | 1 | __...... | 6 | 75 |
| MIMAT0016559 | cin-miR-4035-5p | 3 | __...... | 8 | 75 |
| MIMAT0015840 | ppy-miR-338-5p | 3 | __...... | 8 | 75 |
| MIMAT0017650 | aly-miR860-3p | 1 | _......_ | 6 | 75 |
| MIMAT0017519 | aly-miR171c-5p | 8 | __...... | 3 | 75 |
| MIMAT0015414 | bmo-miR-3232 | 8 | __...... | 3 | 75 |
| MIMAT0015379 | bmo-miR-3203-5p | 8 | _......_ | 3 | 75 |
| MIMAT0014711 | api-miR-1000 | 6 | __...... | 1 | 75 |
| MIMAT0014648 | tgu-miR-16b-3p | 3 | __...... | 8 | 75 |
| MIMAT0014403 | cqu-miR-1000 | 6 | __...... | 1 | 75 |
| MIMAT0014379 | cqu-miR-283 | 1 | __...... | 6 | 75 |
| MIMAT0014326 | bmo-miR-1000 | 6 | __...... | 1 | 75 |
| MIMAT0014297 | aae-miR-1000 | 6 | __...... | 1 | 75 |
| MIMAT0014279 | aae-miR-283 | 1 | __...... | 6 | 75 |
| MIMAT0013035 | eca-miR-338-5p | 3 | __...... | 8 | 75 |
| MIMAT0013600 | bmo-miR-33-3p | 1 | __...... | 6 | 75 |
| MIMAT0012568 | aqc-miR171c | 8 | ......__ | 3 | 75 |
| MIMAT0013505 | mtr-miR2677 | 8 | _......_ | 3 | 75 |
| MIMAT0012457 | dsi-miR-1000-5p | 6 | __...... | 1 | 75 |
| MIMAT0012448 | dsi-miR-955-3p | 3 | ......__ | 8 | 75 |
| MIMAT0012343 | dps-miR-2517a-3p | 6 | _......_ | 1 | 75 |
| MIMAT0012290 | dps-miR-2506 | 6 | __...... | 1 | 75 |
| MIMAT0012265 | dps-miR-1000-5p | 6 | __...... | 1 | 75 |
| MIMAT0010119 | ame-miR-1000 | 6 | __...... | 1 | 75 |
| MIMAT0010109 | aga-miR-1000 | 6 | __...... | 1 | 75 |
| MIMAT0010097 | tca-miR-1000-5p | 6 | __...... | 1 | 75 |
| MIMAT0009795 | nve-miR-2036-3p | 7 | __...... | 2 | 75 |
| MIMAT0026880 | mml-miR-454-5p | 3 | _......_ | 8 | 75 |
| MIMAT0006277 | mml-miR-338-5p | 3 | __...... | 8 | 75 |
| MIMAT0026838 | mml-miR-195-3p | 2 | __...... | 7 | 75 |
| MIMAT0026811 | mml-miR-95-5p | 1 | _......_ | 6 | 75 |
| MIMAT0031018 | mml-miR-16-2-3p | 2 | __...... | 7 | 75 |
| MIMAT0006141 | mdo-miR-1542-3p | 6 | _......_ | 1 | 75 |
| MIMAT0006012 | ptc-miR1450 | 1 | ......__ | 6 | 75 |
| MIMAT0007316 | oan-miR-1422q-5p | 1 | ......__ | 6 | 75 |
| MIMAT0007241 | oan-miR-1419b-1-3p | 8 | __...... | 3 | 75 |
| MIMAT0007053 | oan-miR-16b-3p | 3 | __...... | 8 | 75 |
| MIMAT0026747 | mml-miR-510-3p | 8 | ......__ | 3 | 75 |
| MIMAT0005937 | hsa-miR-1279 | 8 | __...... | 3 | 75 |
| MIMAT0005520 | dme-miR-1000-5p | 6 | __...... | 1 | 75 |
| MIMAT0020847 | dme-miR-955-3p | 3 | ......__ | 8 | 75 |
| MIMAT0004304 | ath-miR860 | 1 | _......_ | 6 | 75 |
| MIMAT0026613 | hsa-miR-510-3p | 6 | ......__ | 1 | 75 |
| MIMAT0022901 | ptc-miR171a-5p | 8 | __...... | 3 | 75 |
| MIMAT0015202 | zma-miR171g-5p | 6 | _......_ | 1 | 75 |
| MIMAT0015199 | zma-miR171j-5p | 6 | _......_ | 1 | 75 |
| MIMAT0015155 | zma-miR171b-5p | 7 | __...... | 2 | 75 |
| MIMAT0031058 | gga-miR-16-2-3p | 2 | __...... | 7 | 75 |
| MIMAT0022877 | osa-miR171c-5p | 8 | __...... | 3 | 75 |
| MIMAT0000981 | osa-miR397b | 7 | _......_ | 2 | 75 |
| MIMAT0031900 | ath-miR171c-5p | 8 | __...... | 3 | 75 |
| MIMAT0017149 | rno-miR-195-3p | 2 | __...... | 7 | 75 |
| MIMAT0017094 | rno-miR-16-3p | 3 | __...... | 8 | 75 |
| MIMAT0004701 | hsa-miR-338-5p | 3 | __...... | 8 | 75 |
| MIMAT0004647 | mmu-miR-338-5p | 3 | __...... | 8 | 75 |
| MIMAT0004646 | rno-miR-338-5p | 3 | __...... | 8 | 75 |
| MIMAT0004640 | mmu-miR-325-3p | 8 | _......_ | 3 | 75 |
| MIMAT0004639 | rno-miR-325-3p | 8 | _......_ | 3 | 75 |
| MIMAT0017018 | mmu-miR-16-2-3p | 3 | __...... | 8 | 75 |
| MIMAT0004615 | hsa-miR-195-3p | 2 | __...... | 7 | 75 |
| MIMAT0017000 | mmu-miR-195a-3p | 2 | __...... | 7 | 75 |
| MIMAT0004518 | hsa-miR-16-2-3p | 2 | __...... | 7 | 75 |
| MIMAT0026473 | hsa-miR-95-5p | 1 | _......_ | 6 | 75 |
