| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ttcatcc | 7 | ||
| MIMAT0034073 | gra-miR8693 | 8 | ....... | 2 | 100 |
| MIMAT0012876 | hvt-miR-H11 | 8 | ....... | 2 | 100 |
| MIMAT0013475 | mtr-miR2668 | 1 | ....... | 7 | 100 |
| MIMAT0036395 | gma-miR9760 | 7 | _...... | 2 | 85 |
| MIMAT0035503 | bdi-miR9494 | 1 | ......_ | 6 | 85 |
| MIMAT0035422 | nve-miR-9461 | 8 | _...... | 3 | 85 |
| MIMAT0035363 | bol-miR9408 | 3 | ......_ | 8 | 85 |
| MIMAT0035206 | dme-miR-9371-3p | 3 | ......_ | 8 | 85 |
| MIMAT0034916 | efu-miR-9278 | 8 | ......_ | 3 | 85 |
| MIMAT0034492 | eca-miR-8958 | 6 | _...... | 1 | 85 |
| MIMAT0034211 | gra-miR8773 | 8 | _...... | 3 | 85 |
| MIMAT0033654 | sma-miR-8467-3p | 8 | _...... | 3 | 85 |
| MIMAT0033155 | ppc-miR-8312-3p | 1 | _...... | 6 | 85 |
| MIMAT0031408 | mmu-miR-8104 | 8 | _...... | 3 | 85 |
| MIMAT0030566 | prd-miR-37-5p | 6 | _...... | 1 | 85 |
| MIMAT0032252 | rgl-miR7803b-5p | 6 | _...... | 1 | 85 |
| MIMAT0029996 | mtr-miR7698-5p | 3 | ......_ | 8 | 85 |
| MIMAT0029942 | cbn-miR-7690 | 3 | _...... | 8 | 85 |
| MIMAT0029778 | cbn-miR-77 | 1 | ......_ | 6 | 85 |
| MIMAT0029050 | gga-miR-7448-5p | 2 | _...... | 7 | 85 |
| MIMAT0029045 | gga-miR-7445-3p | 6 | _...... | 1 | 85 |
| MIMAT0028811 | mdo-miR-7377-3p | 2 | _...... | 7 | 85 |
| MIMAT0028604 | mdo-miR-7305-5p | 1 | _...... | 6 | 85 |
| MIMAT0028194 | dev-miR-D19-5p | 6 | ......_ | 1 | 85 |
| MIMAT0028092 | mmu-miR-7093-5p | 8 | _...... | 3 | 85 |
| MIMAT0027820 | mmu-miR-6960-5p | 8 | _...... | 3 | 85 |
| MIMAT0027641 | hsa-miR-6870-3p | 3 | _...... | 8 | 85 |
| MIMAT0027389 | hsa-miR-6744-5p | 7 | _...... | 2 | 85 |
| MIMAT0027360 | hsa-miR-6729-3p | 1 | _...... | 6 | 85 |
| MIMAT0025305 | prv-miR-LLT2 | 2 | _...... | 7 | 85 |
| MIMAT0025189 | ptc-miR6463 | 7 | _...... | 2 | 85 |
| MIMAT0032135 | sma-miR-2d-5p | 2 | _...... | 7 | 85 |
| MIMAT0024593 | bta-miR-6121-3p | 8 | _...... | 3 | 85 |
| MIMAT0024320 | mml-miR-1255a-5p | 7 | _...... | 2 | 85 |
| MIMAT0024176 | ggo-miR-1255a | 7 | _...... | 2 | 85 |
| MIMAT0023489 | hco-miR-5979 | 7 | _...... | 2 | 85 |
| MIMAT0023363 | hco-miR-5908-3p | 1 | ......_ | 6 | 85 |
| MIMAT0022164 | osa-miR5529 | 3 | ......_ | 8 | 85 |
| MIMAT0022099 | aca-miR-5466 | 7 | _...... | 2 | 85 |
| MIMAT0022037 | aca-miR-5417 | 1 | _...... | 6 | 85 |
| MIMAT0021359 | mtr-miR5293 | 6 | ......_ | 1 | 85 |
| MIMAT0021251 | mtr-miR5253 | 6 | ......_ | 1 | 85 |
| MIMAT0021129 | hsa-miR-5196-3p | 1 | _...... | 6 | 85 |
| MIMAT0021117 | hsa-miR-5187-5p | 8 | _...... | 3 | 85 |
| MIMAT0020610 | mmu-miR-5103 | 1 | _...... | 6 | 85 |
| MIMAT0020198 | dme-miR-4971-5p | 6 | _...... | 1 | 85 |
| MIMAT0016735 | cin-miR-4138-5p | 8 | ......_ | 3 | 85 |
| MIMAT0016278 | sja-miR-2d-5p | 2 | _...... | 7 | 85 |
| MIMAT0016181 | ppy-miR-1255b | 6 | _...... | 1 | 85 |
| MIMAT0016180 | ppy-miR-1255a | 7 | _...... | 2 | 85 |
| MIMAT0015405 | bmo-miR-3224 | 1 | _...... | 6 | 85 |
| MIMAT0012417 | dps-miR-2573-3p | 3 | _...... | 8 | 85 |
| MIMAT0011982 | bta-miR-2418 | 8 | _...... | 3 | 85 |
| MIMAT0011625 | crm-miR-2228 | 1 | _...... | 6 | 85 |
| MIMAT0011507 | crm-miR-77 | 1 | ......_ | 6 | 85 |
| MIMAT0017341 | mmu-miR-1934-3p | 7 | _...... | 2 | 85 |
| MIMAT0032063 | dvi-miR-278-5p | 8 | _...... | 3 | 85 |
| MIMAT0007980 | ptr-miR-1255b | 7 | _...... | 2 | 85 |
| MIMAT0007821 | osa-miR812f | 8 | _...... | 3 | 85 |
| MIMAT0006424 | mml-miR-556-5p | 6 | ......_ | 1 | 85 |
| MIMAT0007644 | gga-miR-1740-3p | 1 | _...... | 6 | 85 |
| MIMAT0005945 | hsa-miR-1255b-5p | 7 | _...... | 2 | 85 |
| MIMAT0005906 | hsa-miR-1255a | 7 | _...... | 2 | 85 |
| MIMAT0004357 | ppt-miR414 | 1 | _...... | 6 | 85 |
| MIMAT0001330 | osa-miR414 | 1 | _...... | 6 | 85 |
| MIMAT0000485 | cbr-miR-77 | 1 | ......_ | 6 | 85 |
| MIMAT0020805 | dme-miR-278-5p | 8 | _...... | 3 | 85 |
| MIMAT0000049 | cel-miR-77-3p | 1 | ......_ | 6 | 85 |
