Result for your query miRNA sequence
>hsv2-miR-h9-3p
uucccacc

RED =100 % Complementary sequence
.=Identical residue
blue alphabets=mismatch
_=Gap


Acc numbermiRNAStartAlignmentEnd% Identity
Query1ttcccacc8
MIMAT0014352hsv2-miR-H9-3p1........8100
MIMAT0034500eca-miR-89651......._787
MIMAT0033065ppc-miR-8281-5p7......._187
MIMAT0031716bbe-miR-705-5p7_.......187
MIMAT0030821prd-miR-7961-3p2_.......887
MIMAT0029056gga-miR-7451-5p8......._287
MIMAT0028488mdo-miR-7261-5p7......._187
MIMAT0028312mml-miR-6827-5p7......._187
MIMAT0028008mmu-miR-7052-5p8......._287
MIMAT0027832mmu-miR-3547-5p7......._187
MIMAT0027826mmu-miR-6963-5p7_.......187
MIMAT0025526han-miR3630-3p8......._287
MIMAT0025228ptc-miR6427-3p7......._187
MIMAT0025157mmu-miR-64057......._187
MIMAT0025156mmu-miR-64047......._187
MIMAT0024568bta-miR-1260b2_.......887
MIMAT0024370ppy-miR-1260b2_.......887
MIMAT0024319mml-miR-1260b2_.......887
MIMAT0024240ggo-miR-1260b2_.......887
MIMAT0024066ptr-miR-1260b2_.......887
MIMAT0023746cgr-miR-12602_.......887
MIMAT0019922hsa-miR-4769-5p7_.......187
MIMAT0016184ppy-miR-1260a2_.......887
MIMAT0015041hsa-miR-1260b2_.......887
MIMAT0013855bta-miR-28977_.......187
MIMAT0010013bfl-miR-7057_.......187
MIMAT0009402mmu-miR-19388_.......287
MIMAT0007764osa-miR1846d-5p1_.......787
MIMAT0007186oan-miR-1391-3p2_.......887
MIMAT0005911hsa-miR-1260a2_.......887
MIMAT0003495mmu-miR-7057_.......187
MIMAT0001587osa-miR4381......._787
MIMAT0036813oha-miR-204-1-3p8......g.187
MIMAT0036051chi-miR-204-3p8......g.187
MIMAT0034905efu-miR-92721.c......887
MIMAT0031180hsa-miR-79771......g.887
MIMAT0022790sha-miR-2048......g.187
MIMAT0021854aca-miR-204a-3p8......g.187
MIMAT0020708bdi-miR51661.g......887
MIMAT0017885rno-miR-702-3p1.g......887
MIMAT0017769esi-miR3454e-5p1......g.887
MIMAT0017759esi-miR3454b-5p1......g.887
MIMAT0017751esi-miR3454c-5p1......g.887
MIMAT0017747esi-miR3454a-5p1......g.887
MIMAT0012429dsi-miR-991-5p1......a.887
MIMAT0003492mmu-miR-702-3p1.g......887
MIMAT0004739rno-miR-204-3p8......g.187
MIMAT0022693hsa-miR-204-3p8......g.187
MIMAT0017002mmu-miR-204-3p8......g.187
MIMAT0037279ame-miR-98756_......_175
MIMAT0037235ata-miR394-3p7__......275
MIMAT0036492tch-miR-188-3p2_......_775
MIMAT0036271chi-miR-532-3p3_......_875
MIMAT0036236chi-miR-450-3p8......__375
MIMAT0036014chi-miR-188-3p2_......_775
MIMAT0035732rno-miR-18967__......275
MIMAT0035472sly-miR9477-3p7......__275
MIMAT0035438sly-miR394-3p7__......275
MIMAT0034298cfa-miR-88086......__175
MIMAT0034205gra-miR482c1......__675
MIMAT0033665sma-miR-2162-5p7_......_275
MIMAT0033011ppc-miR-8263-3p8......__375
MIMAT0032936ppc-miR-8240-5p7_......_275
MIMAT0032494ssa-miR-205a-2-3p2......__775
MIMAT0032493ssa-miR-205a-3p2......__775
MIMAT0031696bbe-miR-4873-5p3......__875
MIMAT0031659bbe-miR-278-5p8__......375
MIMAT0031616bbe-miR-2058-3p7__......275
MIMAT0030408ptc-miR78368__......375
MIMAT0030393ptc-miR78378__......375
MIMAT0032219lva-miR-278-3p8__......375
MIMAT0032172pmi-miR-278-3p8__......375
MIMAT0029890mmu-miR-7684-5p8......__375
MIMAT0029818mmu-miR-7656-5p7_......_275
MIMAT0029630crm-miR-76117......__275
MIMAT0029372lja-miR75457......__275
MIMAT0028812mdo-miR-7378-5p6_......_175
MIMAT0031050mdo-miR-92a-2-5p7__......275
MIMAT0028465mdo-miR-7249-3p6......__175
MIMAT0028454mdo-miR-7244-5p8......__375
MIMAT0028169dev-miR-D1-5p7......__275
MIMAT0028084mmu-miR-7089-5p8_......_375
MIMAT0028054mmu-miR-7074-5p6......__175
MIMAT0027920mmu-miR-7008-5p7_......_275
MIMAT0027903mmu-miR-7000-3p3__......875
MIMAT0027888mmu-miR-6993-5p7_......_275
MIMAT0027818mmu-miR-6959-5p6......__175
MIMAT0027816mmu-miR-6958-5p6_......_175
MIMAT0027804mmu-miR-6952-5p8__......375
MIMAT0027770mmu-miR-6935-5p7_......_275
MIMAT0027744mmu-miR-6922-5p7_......_275
MIMAT0027706mmu-miR-6903-5p7......__275
MIMAT0027620hsa-miR-6769b-5p7__......275
MIMAT0027472hsa-miR-6786-5p8__......375
MIMAT0027456hsa-miR-6778-5p7_......_275
MIMAT0027438hsa-miR-6769a-5p7__......275
MIMAT0027432hsa-miR-6766-5p8__......375
MIMAT0027412hsa-miR-6756-5p8__......375
MIMAT0027379hsa-miR-6739-5p6......__175
MIMAT0027367hsa-miR-6733-5p6......__175
MIMAT0025844hsa-miR-6716-5p6......__175
MIMAT0025801gga-miR-6695-5p7......__275
MIMAT0025725gga-miR-6629-5p7......__275
MIMAT0025597gga-miR-6547-5p6_......_175
MIMAT0025332pde-miR3961_......_675
MIMAT0025289hbr-miR408b8......__375
MIMAT0025117mmu-miR-63738......__375
MIMAT0025112mmu-miR-63687......__275
MIMAT0025095mmu-miR-63528......__375
MIMAT0024960hme-miR-2788__......375
MIMAT0024945hme-miR-1b6......__175
MIMAT0031169ppe-miR482c-3p1......__675
MIMAT0027273ppe-miR482b-3p2......__775
MIMAT0024878osa-miR62556......__175
MIMAT0027237lus-miR396d1_......_675
MIMAT0024531cca-miR396b1_......_675
MIMAT0024493mse-miR-1b6......__175
MIMAT0024451mse-miR-2788__......375
MIMAT0024259ggo-miR-31516__......175
MIMAT0024238ggo-miR-6547__......275
MIMAT0024053ptr-miR-46547_......_275
MIMAT0024031ptr-miR-31516__......175
MIMAT0023982cgr-miR-532-3p3_......_875
MIMAT0023804cgr-miR-181d-3p1__......675
MIMAT0023466hco-miR-59627_......_275
MIMAT0023265osa-miR57978_......_375
MIMAT0023152mtr-miR5206b6_......_175
MIMAT0022766vun-miR4823......__875
MIMAT0023031tur-miR-278-3p8__......375
MIMAT0022328cin-miR-5596b-3p8__......375
MIMAT0022100aca-miR-54671......__675
MIMAT0021630gma-miR408b-5p7......__275
MIMAT0021081hsa-miR-5089-5p6_......_175
MIMAT0021002gma-miR482c-3p1......__675
MIMAT0020452bfl-miR-48733......__875
MIMAT0019720hsa-miR-46547_......_275
MIMAT0019710hsa-miR-46487_......_275
MIMAT0019707hsa-miR-4646-5p8......__375
MIMAT0019584pma-miR-45521_......_675
MIMAT0019324oar-miR-541-3p7__......275
MIMAT0018999hsa-miR-44726__......175
MIMAT0018998hsa-miR-44716......__175
MIMAT0018966hsa-miR-44476__......175
MIMAT0020956hsa-miR-4433a-5p3_......_875
MIMAT0018929hsa-miR-44176__......175
MIMAT0018479csi-miR482a-5p7_......_275
MIMAT0018473csi-miR4723......__875
MIMAT0018336gma-miR394b-3p7__......275
MIMAT0018172mghv-miR-M1-13-5p6......__175
MIMAT0018143pab-miR37106......__175
MIMAT0018042vvi-miR3633b-3p2......__775
MIMAT0018036vvi-miR3632-3p2......__775
MIMAT0018028vvi-miR3630-3p8......__375
MIMAT0016930isc-miR-2788__......375
MIMAT0016850hsa-miR-43011_......_675
MIMAT0016774cin-miR-4166-5p6......__175
MIMAT0016771cin-miR-4163-3p2__......775
MIMAT0017837rno-miR-35646......__175
MIMAT0016328ahy-miR408-5p7......__275
MIMAT0016159ppy-miR-1224-3p2__......775
MIMAT0016087ppy-miR-654-5p7__......275
MIMAT0015990ppy-miR-5417__......275
MIMAT0015988ppy-miR-532-3p3_......_875
MIMAT0015718ssc-miR-450c-3p8......__375
MIMAT0017544aly-miR394a-3p7__......275
MIMAT0019209hsa-miR-3156-3p2_......_775
MIMAT0015024hsa-miR-3151-5p6__......175
MIMAT0014919mmu-miR-3100-5p7......__275
MIMAT0014823mmu-miR-3057-3p1_......_675
MIMAT0014723api-miR-2788__......375
MIMAT0026961tgu-miR-2963-5p3......__875
MIMAT0014377cqu-miR-2788__......375
MIMAT0014344ghr-miR2948-5p7_......_275
MIMAT0014238aae-miR-278-3p8__......375
MIMAT0014017zma-miR396h1_......_675
MIMAT0014016zma-miR396g-5p1_......_675
MIMAT0013941ssc-miR-532-3p3_......_875
MIMAT0017380ssc-miR-450b-3p7......__275
MIMAT0017375ssc-miR-181d-3p1__......675
MIMAT0013846bta-miR-28886__......175
MIMAT0013788bmo-miR-1b-3p6......__175
MIMAT0013236eca-miR-532-3p3_......_875
MIMAT0013221eca-miR-450b-3p7......__275
MIMAT0013199eca-miR-188-3p2_......_775
MIMAT0013168eca-miR-5417__......275
MIMAT0026951mml-miR-541-3p7__......275
MIMAT0012653dpu-miR-2788__......375
MIMAT0012203dme-miR-2494-3p1......__675
MIMAT0012024bta-miR-24478......__375
MIMAT0011914bta-miR-2370-5p6......__175
MIMAT0011765zma-miR2118f1......__675
MIMAT0011757osa-miR2118r1......__675
MIMAT0011744osa-miR2118e1......__675
MIMAT0011173pvu-miR482-3p3......__875
MIMAT0011165mdm-miR482a-3p1......__675
MIMAT0010135bfl-miR-2788__......375
MIMAT0019167bfl-miR-2058-3p7__......275
MIMAT0009674spu-miR-278-3p8__......375
MIMAT0009640sko-miR-2788__......375
MIMAT0009592lgi-miR-2788__......375
MIMAT0009538cte-miR-2788__......375
MIMAT0009164bmo-miR-278-3p8__......375
MIMAT0009424mmu-miR-19536......__175
MIMAT0009343bta-miR-5417__......275
MIMAT0009086dya-miR-2788__......375
MIMAT0009029dwi-miR-2788__......375
MIMAT0008937dvi-miR-278-3p8__......375
MIMAT0008891dsi-miR-2788__......375
MIMAT0008781dse-miR-2788__......375
MIMAT0008726dpe-miR-2788__......375
MIMAT0008676dmo-miR-2788__......375
MIMAT0008597dgr-miR-2788__......375
MIMAT0008530der-miR-2788__......375
MIMAT0008470dan-miR-2788__......375
MIMAT0008213ptr-miR-5323_......_875
MIMAT0008011ptr-miR-12926......__175
MIMAT0006501mml-miR-6621_......_675
MIMAT0006495mml-miR-654-5p7__......275
MIMAT0006404mml-miR-532-3p3_......_875
MIMAT0026878mml-miR-450a-1-3p8......__375
MIMAT0026809mml-miR-92a-5p7__......275
MIMAT0007727gga-miR-18098_......_375
MIMAT0007554gga-miR-16706_......_175
MIMAT0007457gga-miR-15947__......275
MIMAT0007364gma-miR482a-3p3......__875
MIMAT0007206oan-miR-1400-3p3_......_875
MIMAT0006857oan-miR-92a-1-5p7__......275
MIMAT0005758ssy-miR-513c1......__675
MIMAT0005943hsa-miR-1292-5p6......__175
MIMAT0022943hsa-miR-1233-5p7_......_275
MIMAT0005571mml-miR-1224-3p2__......775
MIMAT0005569ptr-miR-1224-3p2__......775
MIMAT0005323rno-miR-532-3p3_......_875
MIMAT0017297rno-miR-188-3p2_......_775
MIMAT0005266smo-miR11098_......_375
MIMAT0020890dme-miR-991-5p2......__775
MIMAT0004920hsa-miR-541-3p7__......275
MIMAT0017264mmu-miR-181d-3p1__......675
MIMAT0004011sme-miR-278-3p8__......375
MIMAT0003901ppt-miR12127_......_275
MIMAT0003512mmu-miR-450b-3p8......__375
MIMAT0017231mmu-miR-1224-3p2__......775
MIMAT0005459hsa-miR-1224-3p2__......775
MIMAT0019091rlcv-miR-rL1-15-5p2__......775
MIMAT0019087rlcv-miR-rL1-8-3p6__......175
MIMAT0003330hsa-miR-654-5p7__......275
MIMAT0003325hsa-miR-6621_......_675
MIMAT0004781mmu-miR-532-3p3_......_875
MIMAT0004780hsa-miR-532-3p3_......_875
MIMAT0026571mml-miR-188-3p1_......_675
MIMAT0002061ptc-miR472b3......__875
MIMAT0015163zma-miR394b-3p7__......275
MIMAT0015162zma-miR394a-3p7__......275
MIMAT0017182mmu-miR-450a-1-3p8......__375
MIMAT0022700hsa-miR-450a-1-3p8......__375
MIMAT0001511aga-miR-2788__......375
MIMAT0001482ame-miR-2788__......375
MIMAT0001242dps-miR-2788__......375
MIMAT0031907ath-miR394b-3p7__......275
MIMAT0017108rno-miR-92a-2-5p7__......275
MIMAT0004635mmu-miR-92a-2-5p7__......275
MIMAT0004613hsa-miR-188-3p2_......_775
MIMAT0000339dme-miR-278-3p8__......375
MIMAT0004541mmu-miR-188-3p2_......_775
MIMAT0004508hsa-miR-92a-2-5p7__......275