| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ttccccgt | 8 | ||
| MIMAT0005541 | mcmv-miR-m22-1 | 1 | ........ | 8 | 100 |
| MIMAT0034448 | eca-miR-8920 | 2 | ......._ | 8 | 87 |
| MIMAT0031339 | stu-miR408b-5p | 7 | _....... | 1 | 87 |
| MIMAT0027454 | hsa-miR-6777-5p | 7 | _....... | 1 | 87 |
| MIMAT0025739 | gga-miR-6642-5p | 1 | ......._ | 7 | 87 |
| MIMAT0011918 | bta-miR-2373-5p | 2 | ......._ | 8 | 87 |
| MIMAT0022913 | ptc-miR408-5p | 7 | ......._ | 1 | 87 |
| MIMAT0027799 | mmu-miR-6949-3p | 1 | ......t. | 8 | 87 |
| MIMAT0025302 | mja-miR-6493-3p | 8 | ......c. | 1 | 87 |
| MIMAT0019623 | pma-miR-4590 | 8 | .c...... | 1 | 87 |
| MIMAT0005594 | mml-miR-1239 | 1 | ......a. | 8 | 87 |
| MIMAT0003294 | hsa-miR-625-5p | 8 | ......c. | 1 | 87 |
| MIMAT0037273 | ame-miR-9869 | 7 | _......_ | 2 | 75 |
| MIMAT0036730 | oha-miR-146b-3p | 2 | __...... | 7 | 75 |
| MIMAT0036697 | oha-miR-1329-3p | 1 | __...... | 6 | 75 |
| MIMAT0036272 | chi-miR-542-5p | 7 | _......_ | 2 | 75 |
| MIMAT0035332 | gsa-miR-9394a-5p | 6 | ......__ | 1 | 75 |
| MIMAT0035228 | dme-miR-9382-3p | 2 | _......_ | 7 | 75 |
| MIMAT0034786 | efu-miR-9200b | 7 | __...... | 2 | 75 |
| MIMAT0034533 | eca-miR-8994 | 1 | _......_ | 6 | 75 |
| MIMAT0033544 | sma-miR-8420-5p | 6 | ......__ | 1 | 75 |
| MIMAT0032774 | ath-miR8175 | 3 | _......_ | 8 | 75 |
| MIMAT0030986 | hsa-miR-8059 | 6 | ......__ | 1 | 75 |
| MIMAT0028999 | oan-miR-7424-3p | 8 | __...... | 3 | 75 |
| MIMAT0028982 | oan-miR-7417-5p | 1 | ......__ | 6 | 75 |
| MIMAT0028722 | mdo-miR-7355-5p | 8 | ......__ | 3 | 75 |
| MIMAT0028662 | mdo-miR-505-5p | 7 | ......__ | 2 | 75 |
| MIMAT0028430 | mmu-miR-7231-5p | 8 | ......__ | 3 | 75 |
| MIMAT0028149 | ssc-miR-7137-5p | 8 | ......__ | 3 | 75 |
| MIMAT0028133 | mmu-miR-7118-5p | 7 | ......__ | 2 | 75 |
| MIMAT0028069 | mmu-miR-7081-3p | 1 | ......__ | 6 | 75 |
| MIMAT0028056 | mmu-miR-7075-5p | 6 | _......_ | 1 | 75 |
| MIMAT0028052 | mmu-miR-7073-5p | 8 | ......__ | 3 | 75 |
| MIMAT0028022 | mmu-miR-7059-5p | 8 | _......_ | 3 | 75 |
| MIMAT0028010 | mmu-miR-7053-5p | 7 | ......__ | 2 | 75 |
| MIMAT0027834 | mmu-miR-6966-5p | 8 | _......_ | 3 | 75 |
| MIMAT0027678 | hsa-miR-6889-5p | 7 | _......_ | 2 | 75 |
| MIMAT0027572 | hsa-miR-6780b-5p | 7 | ......__ | 2 | 75 |
| MIMAT0027466 | hsa-miR-6783-5p | 8 | ......__ | 3 | 75 |
| MIMAT0027427 | hsa-miR-6763-3p | 2 | _......_ | 7 | 75 |
| MIMAT0025832 | gga-miR-6562-5p | 7 | ......__ | 2 | 75 |
| MIMAT0025721 | gga-miR-6625-5p | 8 | ......__ | 3 | 75 |
| MIMAT0025554 | bta-miR-6525 | 8 | ......__ | 3 | 75 |
| MIMAT0024250 | ggo-miR-2110 | 8 | ......__ | 3 | 75 |
| MIMAT0023983 | cgr-miR-542-5p | 8 | _......_ | 3 | 75 |
| MIMAT0023004 | rgl-miR164 | 7 | ......__ | 2 | 75 |
| MIMAT0022241 | sbi-miR5564a | 7 | ......__ | 2 | 75 |
| MIMAT0022078 | aca-miR-5408c-3p | 8 | ......__ | 3 | 75 |
| MIMAT0022017 | aca-miR-5404 | 3 | __...... | 8 | 75 |
| MIMAT0021955 | aca-miR-425-3p | 8 | __...... | 3 | 75 |
| MIMAT0021776 | aca-miR-146a-3p | 2 | __...... | 7 | 75 |
| MIMAT0022993 | gma-miR408c-5p | 8 | ......__ | 3 | 75 |
| MIMAT0022992 | gma-miR408a-5p | 8 | ......__ | 3 | 75 |
| MIMAT0021447 | asu-miR-36e-5p | 6 | _......_ | 1 | 75 |
| MIMAT0021443 | asu-miR-36c-5p | 6 | _......_ | 1 | 75 |
| MIMAT0020755 | bdi-miR5198 | 6 | ......__ | 1 | 75 |
| MIMAT0022986 | mmu-miR-3572-5p | 7 | ......__ | 2 | 75 |
| MIMAT0019885 | hsa-miR-4749-5p | 8 | _......_ | 3 | 75 |
| MIMAT0019844 | hsa-miR-4725-3p | 7 | ......__ | 2 | 75 |
| MIMAT0019806 | hsa-miR-4706 | 8 | _......_ | 3 | 75 |
| MIMAT0018760 | tca-miR-3852-5p | 6 | __...... | 1 | 75 |
| MIMAT0018557 | ame-miR-965-5p | 6 | ......__ | 1 | 75 |
| MIMAT0018105 | hsa-miR-3679-3p | 2 | ......__ | 7 | 75 |
| MIMAT0016901 | hsa-miR-4271 | 7 | ......__ | 2 | 75 |
| MIMAT0015991 | ppy-miR-542-5p | 7 | _......_ | 2 | 75 |
| MIMAT0015052 | hsa-miR-3175 | 6 | _......_ | 1 | 75 |
| MIMAT0015026 | hsa-miR-3153 | 6 | ......__ | 1 | 75 |
| MIMAT0014905 | mmu-miR-3092-5p | 7 | ......__ | 2 | 75 |
| MIMAT0014831 | mmu-miR-3062-3p | 6 | _......_ | 1 | 75 |
| MIMAT0013924 | ssc-miR-542-5p | 7 | _......_ | 2 | 75 |
| MIMAT0013847 | bta-miR-2889 | 2 | _......_ | 7 | 75 |
| MIMAT0013237 | eca-miR-542-5p | 8 | _......_ | 3 | 75 |
| MIMAT0013594 | bta-miR-542-5p | 7 | _......_ | 2 | 75 |
| MIMAT0012171 | hbv-miR-B4 | 6 | __...... | 1 | 75 |
| MIMAT0011808 | bta-miR-2299-3p | 8 | _......_ | 3 | 75 |
| MIMAT0010133 | hsa-miR-2110 | 8 | ......__ | 3 | 75 |
| MIMAT0006406 | mml-miR-542-5p | 7 | _......_ | 2 | 75 |
| MIMAT0007225 | oan-miR-1408 | 6 | _......_ | 1 | 75 |
| MIMAT0007211 | oan-miR-1404 | 8 | ......__ | 3 | 75 |
| MIMAT0005394 | cre-miR1151a-3p | 6 | __...... | 1 | 75 |
| MIMAT0015227 | bmo-miR-14-5p | 6 | _......_ | 1 | 75 |
| MIMAT0003415 | ebv-miR-BART6-3p | 6 | _......_ | 1 | 75 |
| MIMAT0003340 | hsa-miR-542-5p | 7 | _......_ | 2 | 75 |
| MIMAT0003178 | rno-miR-542-5p | 8 | _......_ | 3 | 75 |
| MIMAT0003171 | mmu-miR-542-5p | 8 | _......_ | 3 | 75 |
