| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ttccgcc | 7 | ||
| MIMAT0023709 | hsa-miR-6084 | 1 | ....... | 7 | 100 |
| MIMAT0022824 | sha-miR-1549 | 1 | ....... | 7 | 100 |
| MIMAT0020157 | dme-miR-4947-5p | 2 | ....... | 8 | 100 |
| MIMAT0012821 | ptr-miR-718 | 2 | ....... | 8 | 100 |
| MIMAT0012735 | hsa-miR-718 | 2 | ....... | 8 | 100 |
| MIMAT0009939 | cfa-miR-718 | 2 | ....... | 8 | 100 |
| MIMAT0006149 | mdo-miR-1549-3p | 1 | ....... | 7 | 100 |
| MIMAT0003514 | mmu-miR-718 | 2 | ....... | 8 | 100 |
| MIMAT0037042 | ssc-miR-9824-5p | 6 | _...... | 1 | 85 |
| MIMAT0036099 | chi-miR-25-5p | 7 | _...... | 2 | 85 |
| MIMAT0034456 | eca-miR-8928 | 2 | _...... | 7 | 85 |
| MIMAT0032833 | cel-miR-8208-5p | 1 | _...... | 6 | 85 |
| MIMAT0032562 | ssa-miR-25-3-5p | 7 | _...... | 2 | 85 |
| MIMAT0032560 | ssa-miR-25-5p | 7 | _...... | 2 | 85 |
| MIMAT0031418 | mmu-miR-8112 | 3 | _...... | 8 | 85 |
| MIMAT0030160 | bdi-miR7719-5p | 1 | _...... | 6 | 85 |
| MIMAT0029957 | osa-miR7693-5p | 3 | ......_ | 8 | 85 |
| MIMAT0029070 | gga-miR-7458-5p | 8 | ......_ | 3 | 85 |
| MIMAT0029018 | oan-miR-7434-5p | 3 | ......_ | 8 | 85 |
| MIMAT0028144 | ssc-miR-7134-3p | 8 | ......_ | 3 | 85 |
| MIMAT0026368 | bma-miR-5869 | 1 | ......_ | 6 | 85 |
| MIMAT0027600 | hsa-miR-6850-5p | 8 | ......_ | 3 | 85 |
| MIMAT0024598 | hsa-miR-6125 | 6 | ......_ | 1 | 85 |
| MIMAT0023869 | cgr-miR-25-5p | 7 | _...... | 2 | 85 |
| MIMAT0023307 | osa-miR5832 | 8 | _...... | 3 | 85 |
| MIMAT0020146 | dme-miR-4940-5p | 7 | _...... | 2 | 85 |
| MIMAT0019852 | hsa-miR-4730 | 8 | _...... | 3 | 85 |
| MIMAT0019406 | pma-miR-25b-5p | 6 | _...... | 1 | 85 |
| MIMAT0018563 | ame-miR-3784 | 8 | ......_ | 3 | 85 |
| MIMAT0018552 | ame-miR-3775 | 8 | _...... | 3 | 85 |
| MIMAT0016137 | ppy-miR-937 | 1 | ......_ | 6 | 85 |
| MIMAT0016091 | ppy-miR-658 | 6 | _...... | 1 | 85 |
| MIMAT0017788 | esi-miR3452-3p | 1 | ......_ | 6 | 85 |
| MIMAT0017780 | esi-miR3453-3p | 6 | _...... | 1 | 85 |
| MIMAT0015355 | zma-miR398b-5p | 8 | _...... | 3 | 85 |
| MIMAT0013861 | bta-miR-2903 | 1 | ......_ | 6 | 85 |
| MIMAT0012714 | hvt-miR-H4-5p | 6 | _...... | 1 | 85 |
| MIMAT0011441 | cel-miR-2213-5p | 7 | _...... | 2 | 85 |
| MIMAT0009362 | bta-miR-658 | 6 | _...... | 1 | 85 |
| MIMAT0008307 | ptr-miR-658 | 6 | _...... | 1 | 85 |
| MIMAT0006774 | cel-miR-1832a-3p | 8 | _...... | 3 | 85 |
| MIMAT0007032 | oan-miR-1367-3p | 8 | ......_ | 3 | 85 |
| MIMAT0003336 | hsa-miR-658 | 6 | _...... | 1 | 85 |
| MIMAT0031946 | dre-miR-25-5p | 7 | _...... | 2 | 85 |
| MIMAT0004713 | rno-miR-25-5p | 7 | _...... | 2 | 85 |
| MIMAT0017049 | mmu-miR-25-5p | 7 | _...... | 2 | 85 |
| MIMAT0004498 | hsa-miR-25-5p | 7 | _...... | 2 | 85 |
| MIMAT0000027 | cel-miR-56-5p | 7 | _...... | 2 | 85 |
