| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ttcgagt | 7 | ||
| MIMAT0037270 | ame-miR-9866 | 1 | ....... | 7 | 100 |
| MIMAT0036978 | bta-miR-4444 | 2 | _...... | 7 | 85 |
| MIMAT0032845 | cel-miR-8212-3p | 1 | ......_ | 6 | 85 |
| MIMAT0032842 | cel-miR-8211-5p | 6 | _...... | 1 | 85 |
| MIMAT0029147 | ghr-miR7500 | 2 | _...... | 7 | 85 |
| MIMAT0028415 | mmu-miR-7223-3p | 8 | ......_ | 3 | 85 |
| MIMAT0024502 | mse-miR-6094 | 3 | ......_ | 8 | 85 |
| MIMAT0024339 | mml-miR-1304 | 1 | ......_ | 6 | 85 |
| MIMAT0023488 | hco-miR-5978 | 1 | ......_ | 6 | 85 |
| MIMAT0021397 | rmi-miR-5324 | 1 | ......_ | 6 | 85 |
| MIMAT0018962 | hsa-miR-4444 | 2 | _...... | 7 | 85 |
| MIMAT0018858 | tca-miR-3881-5p | 1 | _...... | 6 | 85 |
| MIMAT0018831 | tca-miR-3869-3p | 3 | ......_ | 8 | 85 |
| MIMAT0018755 | tca-miR-3850-3p | 1 | ......_ | 6 | 85 |
| MIMAT0018743 | tca-miR-3847-3p | 6 | ......_ | 1 | 85 |
| MIMAT0016296 | sja-miR-3487 | 8 | ......_ | 3 | 85 |
| MIMAT0016224 | ppy-miR-1304 | 1 | ......_ | 6 | 85 |
| MIMAT0014300 | aae-miR-2942 | 3 | ......_ | 8 | 85 |
| MIMAT0015370 | aae-miR-315-3p | 3 | ......_ | 8 | 85 |
| MIMAT0013726 | bmo-miR-2816 | 2 | _...... | 7 | 85 |
| MIMAT0012422 | dps-miR-2576 | 2 | _...... | 7 | 85 |
| MIMAT0012007 | bta-miR-2435 | 8 | _...... | 3 | 85 |
| MIMAT0011832 | bta-miR-2284t-3p | 8 | _...... | 3 | 85 |
| MIMAT0009077 | dya-miR-314 | 3 | ......_ | 8 | 85 |
| MIMAT0009025 | dwi-miR-314 | 3 | ......_ | 8 | 85 |
| MIMAT0008908 | dvi-miR-314-3p | 3 | ......_ | 8 | 85 |
| MIMAT0008864 | dsi-miR-314 | 3 | ......_ | 8 | 85 |
| MIMAT0008795 | dse-miR-314 | 3 | ......_ | 8 | 85 |
| MIMAT0008720 | dpe-miR-314 | 3 | ......_ | 8 | 85 |
| MIMAT0008644 | dmo-miR-314 | 3 | ......_ | 8 | 85 |
| MIMAT0008598 | dgr-miR-314 | 3 | ......_ | 8 | 85 |
| MIMAT0008528 | der-miR-314 | 3 | ......_ | 8 | 85 |
| MIMAT0008465 | dan-miR-314 | 3 | ......_ | 8 | 85 |
| MIMAT0001260 | dps-miR-314 | 3 | ......_ | 8 | 85 |
| MIMAT0001003 | ath-miR402 | 1 | ......_ | 6 | 85 |
| MIMAT0020841 | dme-miR-315-3p | 3 | ......_ | 8 | 85 |
| MIMAT0000406 | dme-miR-314-3p | 3 | ......_ | 8 | 85 |
