| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ttcgcgga | 8 | ||
| MIMAT0033225 | ppc-miR-8340-5p | 2 | _....... | 8 | 87 |
| MIMAT0028621 | mdo-miR-7311-3p | 7 | _....... | 1 | 87 |
| MIMAT0018563 | ame-miR-3784 | 1 | _....... | 7 | 87 |
| MIMAT0014986 | hsa-miR-3124-5p | 1 | ......._ | 7 | 87 |
| MIMAT0013770 | bmo-miR-2848 | 1 | ......._ | 7 | 87 |
| MIMAT0018594 | ame-miR-3727 | 1 | ......a. | 8 | 87 |
| MIMAT0018594 | ame-miR-3727 | 8 | ......a. | 1 | 87 |
| MIMAT0034766 | eca-miR-9185 | 7 | __...... | 2 | 75 |
| MIMAT0033659 | sma-miR-8470-5p | 1 | __...... | 6 | 75 |
| MIMAT0030744 | prd-miR-7942-5p | 3 | __...... | 8 | 75 |
| MIMAT0030742 | prd-miR-7941-5p | 7 | __...... | 2 | 75 |
| MIMAT0028728 | mdo-miR-7358-5p | 6 | ......__ | 1 | 75 |
| MIMAT0028702 | mdo-miR-7345-5p | 8 | ......__ | 3 | 75 |
| MIMAT0028200 | dev-miR-D23-3p | 6 | ......__ | 1 | 75 |
| MIMAT0028185 | dev-miR-D12-3p | 7 | __...... | 2 | 75 |
| MIMAT0025566 | bta-miR-6530 | 1 | __...... | 6 | 75 |
| MIMAT0022682 | hvsa-miR-HSUR5-5p | 6 | __...... | 1 | 75 |
| MIMAT0020574 | osa-miR5077 | 2 | ......__ | 7 | 75 |
| MIMAT0020171 | dme-miR-4955-5p | 1 | __...... | 6 | 75 |
| MIMAT0019613 | pma-miR-4580 | 8 | __...... | 3 | 75 |
| MIMAT0019588 | pma-miR-4556 | 6 | _......_ | 1 | 75 |
| MIMAT0018514 | ame-miR-3746 | 1 | __...... | 6 | 75 |
| MIMAT0016137 | ppy-miR-937 | 7 | __...... | 2 | 75 |
| MIMAT0017782 | esi-miR3451-3p | 1 | _......_ | 6 | 75 |
| MIMAT0013861 | bta-miR-2903 | 7 | __...... | 2 | 75 |
| MIMAT0011290 | dre-miR-2185-3p | 7 | _......_ | 2 | 75 |
| MIMAT0009410 | mmu-miR-1945 | 3 | ......__ | 8 | 75 |
| MIMAT0008344 | ptr-miR-937 | 7 | __...... | 2 | 75 |
| MIMAT0009178 | oan-miR-1421i-3-3p | 8 | _......_ | 3 | 75 |
| MIMAT0009177 | oan-miR-1421i-2-3p | 8 | _......_ | 3 | 75 |
| MIMAT0007233 | oan-miR-1413-3p | 8 | _......_ | 3 | 75 |
| MIMAT0004980 | hsa-miR-937-3p | 7 | __...... | 2 | 75 |
| MIMAT0004413 | rrv-miR-rR1-6-5p | 1 | __...... | 6 | 75 |
| MIMAT0026616 | hsa-miR-579-5p | 1 | _......_ | 6 | 75 |
| MIMAT0002194 | kshv-miR-K12-3-3p | 1 | _......_ | 6 | 75 |
