| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ttcgtagc | 8 | ||
| MIMAT0028177 | dev-miR-D7-5p | 1 | ........ | 8 | 100 |
| MIMAT0026337 | bma-miR-5839 | 2 | ......._ | 8 | 87 |
| MIMAT0024496 | mse-miR-3389 | 1 | _....... | 7 | 87 |
| MIMAT0015589 | bmo-miR-3389-5p | 1 | _....... | 7 | 87 |
| MIMAT0013639 | bmo-miR-2764 | 1 | ......._ | 7 | 87 |
| MIMAT0011995 | bta-miR-2425-3p | 1 | ......._ | 7 | 87 |
| MIMAT0033014 | ppc-miR-8265-5p | 1 | .g...... | 8 | 87 |
| MIMAT0016518 | cin-miR-4014-1-5p | 8 | .g...... | 1 | 87 |
| MIMAT0035622 | dvi-miR-9540-5p | 1 | ......__ | 6 | 75 |
| MIMAT0035405 | nve-miR-9444 | 6 | ......__ | 1 | 75 |
| MIMAT0033701 | pxy-miR-8493 | 6 | ......__ | 1 | 75 |
| MIMAT0032394 | ssa-miR-15a-5p | 1 | __...... | 6 | 75 |
| MIMAT0031709 | bbe-miR-4891-3p | 2 | __...... | 7 | 75 |
| MIMAT0029858 | mmu-miR-7675-5p | 8 | ......__ | 3 | 75 |
| MIMAT0029352 | lja-miR7529 | 2 | __...... | 7 | 75 |
| MIMAT0028926 | mdo-miR-7398u-5p | 2 | _......_ | 7 | 75 |
| MIMAT0026296 | ccr-miR-738 | 6 | __...... | 1 | 75 |
| MIMAT0023677 | ame-miR-6053 | 7 | ......__ | 2 | 75 |
| MIMAT0021748 | aca-miR-1329-3p | 3 | _......_ | 8 | 75 |
| MIMAT0021241 | mtr-miR5245 | 3 | _......_ | 8 | 75 |
| MIMAT0018914 | tca-miR-3819-5p | 3 | ......__ | 8 | 75 |
| MIMAT0015490 | bmo-miR-3302 | 6 | ......__ | 1 | 75 |
| MIMAT0026956 | tgu-miR-1329-3p | 3 | _......_ | 8 | 75 |
| MIMAT0007282 | gga-miR-1329-3p | 3 | _......_ | 8 | 75 |
| MIMAT0006799 | oan-miR-1329-3p | 3 | _......_ | 8 | 75 |
| MIMAT0003769 | dre-miR-738 | 6 | __...... | 1 | 75 |
| MIMAT0003198 | rno-miR-376a-3p | 2 | _......_ | 7 | 75 |
| MIMAT0001324 | ath-miR416 | 3 | ......__ | 8 | 75 |
| MIMAT0000740 | mmu-miR-376a-3p | 2 | _......_ | 7 | 75 |
| MIMAT0015106 | cel-miR-65-3p | 8 | __...... | 3 | 75 |
