| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ttcgtcc | 7 | ||
| MIMAT0016776 | cin-miR-4168-3p | 8 | ....... | 2 | 100 |
| MIMAT0004472 | mdv2-miR-M27-5p | 2 | ....... | 8 | 100 |
| MIMAT0036988 | tae-miR9776 | 8 | _...... | 3 | 85 |
| MIMAT0035810 | tae-miR9657b-5p | 1 | ......_ | 6 | 85 |
| MIMAT0035389 | nve-miR-9429-3p | 1 | ......_ | 6 | 85 |
| MIMAT0034103 | gra-miR8714 | 8 | _...... | 3 | 85 |
| MIMAT0031826 | cpa-miR398 | 7 | _...... | 2 | 85 |
| MIMAT0028476 | mdo-miR-7255-5p | 7 | _...... | 2 | 85 |
| MIMAT0026390 | sbi-miR5564c-5p | 3 | ......_ | 8 | 85 |
| MIMAT0025250 | ptc-miR6447 | 8 | ......_ | 3 | 85 |
| MIMAT0024835 | hvu-miR6207 | 7 | _...... | 2 | 85 |
| MIMAT0024822 | hvu-miR6196 | 7 | _...... | 2 | 85 |
| MIMAT0023679 | ame-miR-6055 | 8 | ......_ | 3 | 85 |
| MIMAT0023479 | hco-miR-5972 | 3 | ......_ | 8 | 85 |
| MIMAT0023292 | osa-miR5819 | 7 | _...... | 2 | 85 |
| MIMAT0023268 | osa-miR5799 | 8 | ......_ | 3 | 85 |
| MIMAT0021414 | rmi-miR-5341 | 8 | _...... | 3 | 85 |
| MIMAT0021405 | rmi-miR-5332 | 1 | _...... | 6 | 85 |
| MIMAT0018766 | tca-miR-3855-5p | 1 | ......_ | 6 | 85 |
| MIMAT0016781 | cin-miR-4173-5p | 3 | ......_ | 8 | 85 |
| MIMAT0016746 | cin-miR-4144-5p | 1 | ......_ | 6 | 85 |
| MIMAT0015437 | bmo-miR-3254 | 8 | _...... | 3 | 85 |
| MIMAT0014237 | aae-miR-278-5p | 8 | _...... | 3 | 85 |
| MIMAT0011460 | cel-miR-2219-3p | 8 | ......_ | 3 | 85 |
| MIMAT0009809 | nve-miR-2040b-3p | 1 | ......_ | 6 | 85 |
| MIMAT0015291 | bmo-miR-278-5p | 8 | _...... | 3 | 85 |
| MIMAT0009436 | mmu-miR-1963 | 8 | _...... | 3 | 85 |
| MIMAT0009413 | mmu-miR-1947-5p | 7 | _...... | 2 | 85 |
| MIMAT0007393 | gma-miR1531-3p | 1 | _...... | 6 | 85 |
| MIMAT0001578 | hcmv-miR-UL148D | 1 | _...... | 6 | 85 |
| MIMAT0001332 | osa-miR416 | 3 | ......_ | 8 | 85 |
| MIMAT0015101 | cel-miR-59-5p | 1 | _...... | 6 | 85 |
