| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ttcttat | 7 | ||
| MIMAT0035794 | tae-miR1120b-3p | 1 | ....... | 7 | 100 |
| MIMAT0034206 | gra-miR7484g | 1 | ....... | 7 | 100 |
| MIMAT0030378 | ptc-miR7818 | 2 | ....... | 8 | 100 |
| MIMAT0029569 | ipu-miR-7570 | 1 | ....... | 7 | 100 |
| MIMAT0021056 | gma-miR171i-5p | 7 | ....... | 1 | 100 |
| MIMAT0012863 | hvt-miR-H12-5p | 2 | ....... | 8 | 100 |
| MIMAT0036821 | oha-miR-208-3p | 6 | _...... | 1 | 85 |
| MIMAT0036053 | chi-miR-208b | 7 | _...... | 2 | 85 |
| MIMAT0035796 | tae-miR1130b-3p | 1 | _...... | 6 | 85 |
| MIMAT0035791 | tae-miR9673-5p | 6 | ......_ | 1 | 85 |
| MIMAT0035591 | dvi-miR-970-3p | 8 | _...... | 3 | 85 |
| MIMAT0035540 | bdi-miR5281a | 1 | _...... | 6 | 85 |
| MIMAT0035539 | bdi-miR5281b | 1 | _...... | 6 | 85 |
| MIMAT0034159 | gra-miR8742b | 3 | _...... | 8 | 85 |
| MIMAT0034158 | gra-miR8742a | 3 | _...... | 8 | 85 |
| MIMAT0033517 | sma-miR-8406-3p | 3 | ......_ | 8 | 85 |
| MIMAT0032791 | cel-miR-8189-5p | 3 | _...... | 8 | 85 |
| MIMAT0030376 | ptc-miR6462f | 1 | _...... | 6 | 85 |
| MIMAT0030375 | ptc-miR6462e | 1 | _...... | 6 | 85 |
| MIMAT0030336 | hhi-miR-7791 | 1 | ......_ | 6 | 85 |
| MIMAT0030153 | bdi-miR7715-3p | 6 | ......_ | 1 | 85 |
| MIMAT0030108 | bdi-miR5181c-3p | 3 | ......_ | 8 | 85 |
| MIMAT0028659 | mdo-miR-7328-3p | 6 | ......_ | 1 | 85 |
| MIMAT0028613 | mdo-miR-208b-3p | 6 | _...... | 1 | 85 |
| MIMAT0026443 | sbi-miR5568f-3p | 2 | _...... | 7 | 85 |
| MIMAT0025224 | ptc-miR6462d | 3 | _...... | 8 | 85 |
| MIMAT0025206 | ptc-miR6462c-3p | 3 | _...... | 8 | 85 |
| MIMAT0025204 | ptc-miR6462b | 3 | _...... | 8 | 85 |
| MIMAT0025188 | ptc-miR6462a | 3 | _...... | 8 | 85 |
| MIMAT0024997 | hme-miR-970 | 8 | _...... | 3 | 85 |
| MIMAT0024453 | mse-miR-970 | 8 | _...... | 3 | 85 |
| MIMAT0021860 | aca-miR-208-3p | 6 | _...... | 1 | 85 |
| MIMAT0021325 | mtr-miR5281f | 1 | _...... | 6 | 85 |
| MIMAT0021324 | mtr-miR5281e | 1 | _...... | 6 | 85 |
| MIMAT0021323 | mtr-miR5281d | 1 | _...... | 6 | 85 |
| MIMAT0021322 | mtr-miR5281c | 1 | _...... | 6 | 85 |
| MIMAT0021321 | mtr-miR5281b | 1 | _...... | 6 | 85 |
| MIMAT0019664 | pma-miR-4630 | 7 | _...... | 2 | 85 |
| MIMAT0019521 | pma-miR-208-3p | 6 | _...... | 1 | 85 |
| MIMAT0018243 | gma-miR1520e | 8 | _...... | 3 | 85 |
| MIMAT0018862 | tca-miR-3883-5p | 6 | ......_ | 1 | 85 |
| MIMAT0018664 | tca-miR-3811e-5p | 1 | ......_ | 6 | 85 |
| MIMAT0018078 | hsa-miR-3658 | 8 | ......_ | 3 | 85 |
| MIMAT0017845 | rno-miR-208b-3p | 6 | _...... | 1 | 85 |
| MIMAT0015800 | ppy-miR-208b | 6 | _...... | 1 | 85 |
| MIMAT0015799 | ppy-miR-208a | 6 | _...... | 1 | 85 |
| MIMAT0014378 | cqu-miR-970 | 8 | _...... | 3 | 85 |
| MIMAT0014292 | aae-miR-970 | 8 | _...... | 3 | 85 |
| MIMAT0014141 | ath-miR2937 | 6 | _...... | 1 | 85 |
| MIMAT0013912 | ssc-miR-208b | 6 | _...... | 1 | 85 |
| MIMAT0012900 | eca-miR-208b | 6 | _...... | 1 | 85 |
| MIMAT0012899 | eca-miR-208a | 6 | _...... | 1 | 85 |
| MIMAT0013688 | bmo-miR-2790-3p | 6 | ......_ | 1 | 85 |
| MIMAT0012488 | dsi-miR-970-3p | 8 | _...... | 3 | 85 |
| MIMAT0012222 | dps-miR-970-3p | 8 | _...... | 3 | 85 |
| MIMAT0012139 | sme-miR-8b-5p | 3 | ......_ | 8 | 85 |
| MIMAT0011160 | hsa-miR-2116-5p | 3 | ......_ | 8 | 85 |
| MIMAT0010125 | bmo-miR-970-3p | 8 | _...... | 3 | 85 |
| MIMAT0010105 | aga-miR-970 | 8 | _...... | 3 | 85 |
| MIMAT0010092 | tca-miR-970-3p | 8 | _...... | 3 | 85 |
| MIMAT0009869 | cfa-miR-208b | 6 | _...... | 1 | 85 |
| MIMAT0009868 | cfa-miR-208a | 6 | _...... | 1 | 85 |
| MIMAT0009262 | bta-miR-208b | 6 | _...... | 1 | 85 |
| MIMAT0009261 | bta-miR-208a | 6 | _...... | 1 | 85 |
| MIMAT0008068 | ptr-miR-208b | 6 | _...... | 1 | 85 |
| MIMAT0008067 | ptr-miR-208a | 6 | _...... | 1 | 85 |
| MIMAT0006239 | mml-miR-208b-3p | 6 | _...... | 1 | 85 |
| MIMAT0006238 | mml-miR-208a-3p | 6 | _...... | 1 | 85 |
| MIMAT0007518 | gga-miR-1643-5p | 1 | _...... | 6 | 85 |
| MIMAT0006921 | oan-miR-208-3p | 6 | _...... | 1 | 85 |
| MIMAT0005397 | cre-miR1152 | 6 | ......_ | 1 | 85 |
| MIMAT0005486 | dme-miR-970-3p | 8 | _...... | 3 | 85 |
| MIMAT0004960 | hsa-miR-208b-3p | 6 | _...... | 1 | 85 |
| MIMAT0004939 | mmu-miR-208b-3p | 6 | _...... | 1 | 85 |
| MIMAT0004129 | mdo-miR-208a | 6 | _...... | 1 | 85 |
| MIMAT0003698 | xtr-miR-208 | 6 | _...... | 1 | 85 |
| MIMAT0000880 | rno-miR-208a-3p | 6 | _...... | 1 | 85 |
| MIMAT0000520 | mmu-miR-208a-3p | 6 | _...... | 1 | 85 |
| MIMAT0000241 | hsa-miR-208a-3p | 6 | _...... | 1 | 85 |
