| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ttgaagaa | 8 | ||
| MIMAT0031201 | stu-miR8024a-5p | 1 | ........ | 8 | 100 |
| MIMAT0030384 | ptc-miR7825 | 1 | ........ | 8 | 100 |
| MIMAT0032075 | dvi-miR-2b-5p | 8 | ........ | 1 | 100 |
| MIMAT0006070 | csa-miR-1497 | 1 | ........ | 8 | 100 |
| MIMAT0006068 | cin-miR-1497-3p | 1 | ........ | 8 | 100 |
| MIMAT0006057 | odi-miR-1497h | 1 | ........ | 8 | 100 |
| MIMAT0006056 | odi-miR-1497g | 1 | ........ | 8 | 100 |
| MIMAT0006055 | odi-miR-1497f | 1 | ........ | 8 | 100 |
| MIMAT0006054 | odi-miR-1497e | 1 | ........ | 8 | 100 |
| MIMAT0006053 | odi-miR-1497d | 1 | ........ | 8 | 100 |
| MIMAT0006052 | odi-miR-1497c | 1 | ........ | 8 | 100 |
| MIMAT0006051 | odi-miR-1497b | 1 | ........ | 8 | 100 |
| MIMAT0006050 | odi-miR-1497a | 1 | ........ | 8 | 100 |
| MIMAT0020783 | dme-miR-2b-2-5p | 8 | ........ | 1 | 100 |
| MIMAT0034810 | efu-miR-9218 | 2 | ......._ | 8 | 87 |
| MIMAT0034438 | eca-miR-8910 | 1 | _....... | 7 | 87 |
| MIMAT0030373 | ptc-miR7815 | 8 | ......._ | 2 | 87 |
| MIMAT0028951 | oan-miR-7404-3p | 1 | ......._ | 7 | 87 |
| MIMAT0024759 | nta-miR6156 | 1 | ......._ | 7 | 87 |
| MIMAT0027113 | mml-miR-676-5p | 8 | ......._ | 2 | 87 |
| MIMAT0019812 | hsa-miR-4709-3p | 1 | ......._ | 7 | 87 |
| MIMAT0018203 | hsa-miR-676-5p | 7 | ......._ | 1 | 87 |
| MIMAT0016375 | gga-miR-3526 | 1 | ......._ | 7 | 87 |
| MIMAT0017620 | aly-miR835-3p | 1 | _....... | 7 | 87 |
| MIMAT0015435 | bmo-miR-3252 | 1 | _....... | 7 | 87 |
| MIMAT0017382 | ssc-miR-676-5p | 8 | ......._ | 2 | 87 |
| MIMAT0012729 | iltv-miR-I5-3p | 1 | _....... | 7 | 87 |
| MIMAT0009929 | cfa-miR-300 | 1 | ......._ | 7 | 87 |
| MIMAT0032046 | dvi-miR-13a-5p | 8 | ......._ | 2 | 87 |
| MIMAT0006762 | cfa-miR-676 | 8 | ......._ | 2 | 87 |
| MIMAT0004743 | rno-miR-300-5p | 1 | ......._ | 7 | 87 |
| MIMAT0004578 | mmu-miR-300-5p | 1 | ......._ | 7 | 87 |
| MIMAT0000184 | ath-miR163 | 1 | ......._ | 7 | 87 |
| MIMAT0020782 | dme-miR-2b-1-5p | 8 | ......._ | 2 | 87 |
| MIMAT0034852 | efu-miR-9234c | 8 | .g...... | 1 | 87 |
| MIMAT0030334 | hhi-miR-7790 | 1 | .g...... | 8 | 87 |
| MIMAT0028530 | mdo-miR-7278-5p | 1 | ......g. | 8 | 87 |
| MIMAT0022402 | ath-miR5641 | 1 | .g...... | 8 | 87 |
| MIMAT0021398 | rmi-miR-5325 | 1 | ......g. | 8 | 87 |
| MIMAT0020524 | ath-miR5020a | 1 | .g...... | 8 | 87 |
| MIMAT0018861 | tca-miR-3882-3p | 1 | .g...... | 8 | 87 |
| MIMAT0010150 | mcv-miR-M1-5p | 1 | .g...... | 8 | 87 |
| MIMAT0005092 | ppt-miR1222e | 1 | ......g. | 8 | 87 |
| MIMAT0003917 | ppt-miR1222a | 1 | ......g. | 8 | 87 |
| MIMAT0037246 | ata-miR9783-5p | 2 | ......__ | 7 | 75 |
| MIMAT0036403 | gma-miR9766 | 2 | ......__ | 7 | 75 |
| MIMAT0036075 | chi-miR-22-5p | 8 | __...... | 3 | 75 |
| MIMAT0035743 | rno-miR-3084c-5p | 2 | ......__ | 7 | 75 |
| MIMAT0035741 | rno-miR-3084b-5p | 2 | ......__ | 7 | 75 |
| MIMAT0035739 | rno-miR-3084a-5p | 1 | ......__ | 6 | 75 |
| MIMAT0034627 | eca-miR-9082 | 6 | __...... | 1 | 75 |
| MIMAT0034609 | eca-miR-9064 | 1 | ......__ | 6 | 75 |
| MIMAT0033600 | sma-miR-8445-5p | 8 | ......__ | 3 | 75 |
| MIMAT0033284 | ppc-miR-8364t-5p | 6 | _......_ | 1 | 75 |
| MIMAT0033270 | ppc-miR-8364s-5p | 6 | _......_ | 1 | 75 |
| MIMAT0033262 | ppc-miR-8364r-5p | 6 | _......_ | 1 | 75 |
| MIMAT0033260 | ppc-miR-8364e-5p | 6 | _......_ | 1 | 75 |
| MIMAT0033236 | ppc-miR-8345-5p | 6 | _......_ | 1 | 75 |
| MIMAT0033216 | ppc-miR-8364i-5p | 6 | _......_ | 1 | 75 |
| MIMAT0033209 | ppc-miR-8332-3p | 1 | _......_ | 6 | 75 |
| MIMAT0033188 | ppc-miR-8364m-5p | 6 | _......_ | 1 | 75 |
| MIMAT0033176 | ppc-miR-8364a-5p | 6 | _......_ | 1 | 75 |
| MIMAT0033161 | ppc-miR-8364w-5p | 6 | _......_ | 1 | 75 |
| MIMAT0033119 | ppc-miR-8364g-5p | 6 | _......_ | 1 | 75 |
| MIMAT0033109 | ppc-miR-8364f-5p | 6 | _......_ | 1 | 75 |
| MIMAT0033081 | ppc-miR-8364b-5p | 6 | _......_ | 1 | 75 |
| MIMAT0033045 | ppc-miR-8364n-5p | 6 | _......_ | 1 | 75 |
| MIMAT0033030 | ppc-miR-8364c-5p | 6 | _......_ | 1 | 75 |
| MIMAT0033026 | ppc-miR-8364j-5p | 6 | _......_ | 1 | 75 |
| MIMAT0032974 | ppc-miR-8253-5p | 3 | ......__ | 8 | 75 |
| MIMAT0032836 | cel-miR-8209-3p | 8 | __...... | 3 | 75 |
| MIMAT0032546 | ssa-miR-22b-5p | 8 | __...... | 3 | 75 |
| MIMAT0032544 | ssa-miR-22a-5p | 8 | __...... | 3 | 75 |
| MIMAT0031768 | hbv-miR-B8-3p | 8 | _......_ | 3 | 75 |
| MIMAT0031378 | osa-miR6249b | 3 | _......_ | 8 | 75 |
| MIMAT0030909 | stu-miR8013 | 2 | __...... | 7 | 75 |
| MIMAT0030327 | bdi-miR7785-3p | 7 | __...... | 2 | 75 |
| MIMAT0030221 | bdi-miR7741-5p.2 | 3 | ......__ | 8 | 75 |
| MIMAT0029888 | mmu-miR-216c-5p | 1 | __...... | 6 | 75 |
| MIMAT0029013 | oan-miR-7431-3p | 1 | __...... | 6 | 75 |
| MIMAT0028715 | mdo-miR-7351-3p | 2 | __...... | 7 | 75 |
| MIMAT0028572 | mdo-miR-7294-5p | 3 | ......__ | 8 | 75 |
| MIMAT0028567 | mdo-miR-7291-3p | 6 | _......_ | 1 | 75 |
| MIMAT0028327 | mml-miR-7186-3p | 6 | _......_ | 1 | 75 |
| MIMAT0026170 | cme-miR395c | 1 | ......__ | 6 | 75 |
| MIMAT0026157 | cme-miR395b | 1 | ......__ | 6 | 75 |
| MIMAT0026068 | mdm-miR169f | 1 | _......_ | 6 | 75 |
| MIMAT0026067 | mdm-miR169e | 1 | _......_ | 6 | 75 |
| MIMAT0028129 | mmu-miR-7116-5p | 1 | _......_ | 6 | 75 |
| MIMAT0028094 | mmu-miR-7094-1-5p | 3 | _......_ | 8 | 75 |
| MIMAT0027930 | mmu-miR-7013-5p | 3 | _......_ | 8 | 75 |
| MIMAT0027793 | mmu-miR-6946-3p | 7 | __...... | 2 | 75 |
| MIMAT0027651 | hsa-miR-6875-3p | 7 | __...... | 2 | 75 |
| MIMAT0027628 | hsa-miR-6864-5p | 1 | ......__ | 6 | 75 |
| MIMAT0027409 | hsa-miR-6754-3p | 6 | _......_ | 1 | 75 |
| MIMAT0025808 | gga-miR-6699-5p | 1 | _......_ | 6 | 75 |
| MIMAT0025487 | hsa-miR-6515-3p | 8 | _......_ | 3 | 75 |
| MIMAT0025470 | hsa-miR-6507-5p | 1 | __...... | 6 | 75 |
| MIMAT0025426 | pol-miR-22-5p | 8 | __...... | 3 | 75 |
| MIMAT0025403 | tgu-miR-1744 | 7 | ......__ | 2 | 75 |
| MIMAT0024871 | osa-miR6249a | 3 | _......_ | 8 | 75 |
| MIMAT0024830 | hvu-miR6202 | 1 | _......_ | 6 | 75 |
| MIMAT0024526 | cca-miR395a | 1 | ......__ | 6 | 75 |
| MIMAT0023856 | cgr-miR-22-5p | 8 | __...... | 3 | 75 |
| MIMAT0023573 | tca-miR-6016-5p | 2 | __...... | 7 | 75 |
| MIMAT0023525 | ath-miR5999 | 6 | _......_ | 1 | 75 |
| MIMAT0022254 | sbi-miR5565d | 7 | ......__ | 2 | 75 |
| MIMAT0021887 | aca-miR-22-5p | 8 | __...... | 3 | 75 |
| MIMAT0021617 | gma-miR5376 | 1 | _......_ | 6 | 75 |
| MIMAT0021359 | mtr-miR5293 | 3 | _......_ | 8 | 75 |
| MIMAT0021186 | mtr-miR5227 | 1 | _......_ | 6 | 75 |
| MIMAT0020554 | bdi-miR5056 | 3 | __...... | 8 | 75 |
| MIMAT0019937 | hsa-miR-4778-3p | 8 | __...... | 3 | 75 |
| MIMAT0019734 | hsa-miR-4659b-3p | 7 | __...... | 2 | 75 |
| MIMAT0019727 | hsa-miR-4659a-3p | 7 | __...... | 2 | 75 |
| MIMAT0019692 | hsa-miR-4635 | 3 | ......__ | 8 | 75 |
| MIMAT0020967 | bcy-miR529 | 1 | __...... | 6 | 75 |
| MIMAT0020963 | bgy-miR529 | 1 | __...... | 6 | 75 |
| MIMAT0019048 | hsa-miR-4511 | 1 | __...... | 6 | 75 |
| MIMAT0018650 | tca-miR-3811d-5p | 6 | __...... | 1 | 75 |
| MIMAT0018539 | ame-miR-3765 | 1 | __...... | 6 | 75 |
| MIMAT0018016 | vvi-miR3626-3p | 6 | ......__ | 1 | 75 |
| MIMAT0017897 | rno-miR-3593-3p | 6 | ......__ | 1 | 75 |
| MIMAT0017848 | rno-miR-3568 | 8 | __...... | 3 | 75 |
| MIMAT0017809 | rno-miR-3551-5p | 6 | _......_ | 1 | 75 |
| MIMAT0016257 | sja-miR-36-5p | 1 | __...... | 6 | 75 |
| MIMAT0015709 | ssc-miR-22-5p | 8 | __...... | 3 | 75 |
| MIMAT0017713 | aly-miR3441-5p.2 | 2 | __...... | 7 | 75 |
| MIMAT0017680 | aly-miR163-3p.1 | 1 | _......_ | 6 | 75 |
| MIMAT0017622 | aly-miR838-3p | 8 | __...... | 3 | 75 |
| MIMAT0015563 | bmo-miR-3374-5p | 1 | _......_ | 6 | 75 |
| MIMAT0015065 | hsa-miR-3185 | 2 | __...... | 7 | 75 |
| MIMAT0014876 | mmu-miR-3084-5p | 2 | ......__ | 7 | 75 |
| MIMAT0013761 | bmo-miR-2842 | 1 | _......_ | 6 | 75 |
| MIMAT0013735 | bmo-miR-2824 | 8 | ......__ | 3 | 75 |
| MIMAT0012350 | dps-miR-2545a-5p | 8 | __...... | 3 | 75 |
| MIMAT0012040 | bta-miR-1434-3p | 1 | __...... | 6 | 75 |
| MIMAT0011421 | sme-miR-2200-5p | 1 | _......_ | 6 | 75 |
| MIMAT0007868 | mmu-miR-1903 | 8 | __...... | 3 | 75 |
| MIMAT0007816 | osa-miR1865-3p | 2 | __...... | 7 | 75 |
| MIMAT0006559 | vvi-miR395n | 2 | _......_ | 7 | 75 |
| MIMAT0007649 | gga-miR-1744-3p | 7 | ......__ | 2 | 75 |
| MIMAT0007287 | gga-miR-22-5p | 8 | __...... | 3 | 75 |
| MIMAT0007101 | oan-miR-1422n-5p | 7 | ......__ | 2 | 75 |
| MIMAT0006961 | oan-miR-22-5p | 8 | __...... | 3 | 75 |
| MIMAT0005240 | smo-miR1088-5p | 3 | __...... | 8 | 75 |
| MIMAT0005154 | ppt-miR1043-5p | 7 | ......__ | 2 | 75 |
| MIMAT0004476 | mdv2-miR-M29-5p | 6 | _......_ | 1 | 75 |
| MIMAT0005495 | dme-miR-979-3p | 6 | __...... | 1 | 75 |
| MIMAT0004260 | ath-miR838 | 8 | __...... | 3 | 75 |
| MIMAT0026651 | mdo-miR-22-5p | 8 | __...... | 3 | 75 |
| MIMAT0004012 | sme-miR-281-5p | 1 | _......_ | 6 | 75 |
| MIMAT0003939 | ath-miR780.2 | 6 | __...... | 1 | 75 |
| MIMAT0003869 | mtr-miR395k | 1 | ......__ | 6 | 75 |
| MIMAT0003860 | mtr-miR395g | 1 | ......__ | 6 | 75 |
| MIMAT0003826 | bta-miR-22-5p | 8 | __...... | 3 | 75 |
| MIMAT0003671 | xtr-miR-22-5p | 8 | __...... | 3 | 75 |
| MIMAT0031943 | dre-miR-22b-5p | 8 | __...... | 3 | 75 |
| MIMAT0031942 | dre-miR-22a-5p | 8 | __...... | 3 | 75 |
| MIMAT0031929 | dre-miR-430c-5p | 8 | ......__ | 3 | 75 |
| MIMAT0003152 | rno-miR-22-5p | 8 | __...... | 3 | 75 |
| MIMAT0004629 | mmu-miR-22-5p | 8 | __...... | 3 | 75 |
| MIMAT0004495 | hsa-miR-22-5p | 8 | __...... | 3 | 75 |
