VIRmiRNA | Resource for experimental viral miRNA and their targets

Result for your query miRNA sequence
>rrv-miR-rr1-13-5p
uugcagu

RED	=100 % Complementary sequence
.	=Identical residue
blue alphabets	=mismatch
_	=Gap

Acc number	miRNA	Start	Alignment	End	% Identity
Query		1	`ttgcagt`	7
MIMAT0035907	chi-miR-106a-3p	8	`.......`	2	100
MIMAT0035775	tae-miR9664-3p	1	`.......`	7	100
MIMAT0035235	hbr-miR9386	2	`.......`	8	100
MIMAT0034962	efu-miR-9186n	2	`.......`	8	100
MIMAT0034730	eca-miR-9154	2	`.......`	8	100
MIMAT0034393	cfa-miR-6516	2	`.......`	8	100
MIMAT0032715	ssa-miR-93a-2-3p	7	`.......`	1	100
MIMAT0032714	ssa-miR-93a-3p	7	`.......`	1	100
MIMAT0032503	ssa-miR-20a-1-3p	7	`.......`	1	100
MIMAT0030443	bta-miR-6516	2	`.......`	8	100
MIMAT0030417	hsa-miR-6516-5p	2	`.......`	8	100
MIMAT0027343	mmu-miR-6516-5p	2	`.......`	8	100
MIMAT0025174	mmu-miR-6418-3p	7	`.......`	1	100
MIMAT0018895	tca-miR-3896-3p	8	`.......`	2	100
MIMAT0006850	oan-miR-106-3p	7	`.......`	1	100
MIMAT0026604	mml-miR-106a-3p	7	`.......`	1	100
MIMAT0031939	dre-miR-20b-3p	7	`.......`	1	100
MIMAT0037026	ssc-miR-9808-3p	3	`......_`	8	85
MIMAT0036987	tae-miR530	1	`_......`	6	85
MIMAT0036835	oha-miR-217-5p	7	`_......`	2	85
MIMAT0036823	oha-miR-20a-3p	6	`_......`	1	85
MIMAT0036752	oha-miR-17-3p	6	`_......`	1	85
MIMAT0036752	oha-miR-17-3p	3	`_......`	8	85
MIMAT0036598	tch-miR-1301	1	`......_`	6	85
MIMAT0036458	ptr-miR-1283b	6	`......_`	1	85
MIMAT0036454	ptr-miR-518g-5p	6	`......_`	1	85
MIMAT0036431	ggo-miR-1283	6	`......_`	1	85
MIMAT0036064	chi-miR-217-5p	7	`_......`	2	85
MIMAT0036055	chi-miR-20a-3p	6	`_......`	1	85
MIMAT0035999	chi-miR-17-3p	6	`_......`	1	85
MIMAT0035999	chi-miR-17-3p	3	`_......`	8	85
MIMAT0035963	chi-miR-143-5p	3	`_......`	8	85
MIMAT0035525	bdi-miR444d	1	`_......`	6	85
MIMAT0035524	bdi-miR444c	1	`_......`	6	85
MIMAT0035523	bdi-miR444b	1	`_......`	6	85
MIMAT0035085	efu-miR-455	2	`_......`	7	85
MIMAT0034999	efu-miR-17	6	`_......`	1	85
MIMAT0034999	efu-miR-17	3	`_......`	8	85
MIMAT0034624	eca-miR-9079	3	`......_`	8	85
MIMAT0034578	eca-miR-9036	6	`_......`	1	85
MIMAT0034401	cfa-miR-8893	7	`_......`	2	85
MIMAT0034337	cfa-miR-1301	1	`......_`	6	85
MIMAT0032778	ath-miR8179	8	`_......`	3	85
MIMAT0032507	ssa-miR-20b-3p	6	`_......`	1	85
MIMAT0032507	ssa-miR-20b-3p	3	`_......`	8	85
MIMAT0032505	ssa-miR-20a-3-3p	6	`_......`	1	85
MIMAT0032505	ssa-miR-20a-3-3p	3	`_......`	8	85
MIMAT0032504	ssa-miR-20a-2-3p	6	`_......`	1	85
MIMAT0032504	ssa-miR-20a-2-3p	3	`_......`	8	85
MIMAT0032416	ssa-miR-17-3p	2	`_......`	7	85
MIMAT0032415	ssa-miR-17-3-3p	6	`_......`	1	85
MIMAT0032415	ssa-miR-17-3-3p	3	`_......`	8	85
MIMAT0032365	ssa-miR-143-5p	3	`_......`	8	85
MIMAT0032289	ssa-miR-106b-3p	3	`_......`	8	85
MIMAT0031648	bbe-miR-217-5p	7	`_......`	2	85
MIMAT0032237	lva-miR-4854-3p	3	`......_`	8	85
MIMAT0029593	cbr-miR-7583c-5p	8	`......_`	3	85
MIMAT0029571	ipu-miR-7572	3	`......_`	8	85
MIMAT0029469	ipu-miR-217	7	`_......`	2	85
MIMAT0029462	ipu-miR-20a	6	`_......`	1	85
MIMAT0029462	ipu-miR-20a	3	`_......`	8	85
MIMAT0029435	ipu-miR-17b	6	`_......`	1	85
MIMAT0029435	ipu-miR-17b	3	`_......`	8	85
MIMAT0029434	ipu-miR-17a	6	`_......`	1	85
MIMAT0029434	ipu-miR-17a	3	`_......`	8	85
MIMAT0028581	mdo-miR-449c-3p	7	`_......`	2	85
MIMAT0028483	mdo-miR-7258-3p	6	`......_`	1	85
MIMAT0026270	ccr-miR-217	7	`_......`	2	85
MIMAT0026266	ccr-miR-20a-3p	6	`_......`	1	85
MIMAT0026266	ccr-miR-20a-3p	3	`_......`	8	85
MIMAT0026237	ccr-miR-17-3p	6	`_......`	1	85
MIMAT0026237	ccr-miR-17-3p	3	`_......`	8	85
MIMAT0027515	hsa-miR-6807-3p	7	`_......`	2	85
MIMAT0025806	gga-miR-6516-5p	2	`_......`	7	85
MIMAT0025771	gga-miR-6669-3p	1	`......_`	6	85
MIMAT0025699	gga-miR-6605-5p	6	`_......`	1	85
MIMAT0025694	gga-miR-6600-3p	1	`_......`	6	85
MIMAT0025059	rno-miR-6321	7	`_......`	2	85
MIMAT0024354	mml-miR-217b	7	`_......`	2	85
MIMAT0024234	ggo-miR-509	7	`_......`	2	85
MIMAT0024158	ggo-miR-1301	1	`......_`	6	85
MIMAT0023962	cgr-miR-450b-5p	3	`......_`	8	85
MIMAT0023796	cgr-miR-17-3p	6	`_......`	1	85
MIMAT0023796	cgr-miR-17-3p	3	`_......`	8	85
MIMAT0023428	hco-miR-40e	6	`_......`	1	85
MIMAT0023395	hco-miR-5921-5p	6	`......_`	1	85
MIMAT0023258	osa-miR5791	1	`......_`	6	85
MIMAT0022608	ola-miR-455-3p	1	`_......`	6	85
MIMAT0022596	ola-miR-187	8	`......_`	3	85
MIMAT0022262	zma-miR444b	1	`_......`	6	85
MIMAT0022261	zma-miR444a	1	`_......`	6	85
MIMAT0021878	aca-miR-217-5p	7	`_......`	2	85
MIMAT0021862	aca-miR-20a-3p	6	`_......`	1	85
MIMAT0021804	aca-miR-17-3p	6	`_......`	1	85
MIMAT0021804	aca-miR-17-3p	3	`_......`	8	85
MIMAT0021769	aca-miR-143-5p	3	`_......`	8	85
MIMAT0021242	mtr-miR5246	1	`......_`	6	85
MIMAT0020286	ssp-miR444c-3p	1	`_......`	6	85
MIMAT0020285	ssp-miR444b.2	1	`_......`	6	85
MIMAT0020283	ssp-miR444a	1	`_......`	6	85
MIMAT0020543	hvu-miR444b	1	`_......`	6	85
MIMAT0020541	hsa-miR-5047	1	`......_`	6	85
MIMAT0020125	xbo-miR-92b	7	`_......`	2	85
MIMAT0020077	spu-miR-4854	3	`......_`	8	85
MIMAT0019598	pma-miR-4566	3	`_......`	8	85
MIMAT0019528	pma-miR-217a	7	`_......`	2	85
MIMAT0019472	pma-miR-143-5p	3	`_......`	8	85
MIMAT0019396	pma-miR-20a-3p	6	`_......`	1	85
MIMAT0019384	pma-miR-17a-3p	6	`_......`	1	85
MIMAT0019384	pma-miR-17a-3p	3	`_......`	8	85
MIMAT0018930	hsa-miR-4418	7	`_......`	2	85
MIMAT0016400	cin-miR-3598-3p	2	`_......`	7	85
MIMAT0016221	ppy-miR-1301	1	`......_`	6	85
MIMAT0015986	ppy-miR-527	6	`......_`	1	85
MIMAT0015951	ppy-miR-518a-5p	6	`......_`	1	85
MIMAT0015933	ppy-miR-509-5p	7	`_......`	2	85
MIMAT0015803	ppy-miR-217	7	`_......`	2	85
MIMAT0014610	tgu-miR-455-3p	1	`_......`	6	85
MIMAT0027016	tgu-miR-106-3p	6	`_......`	1	85
MIMAT0027016	tgu-miR-106-3p	3	`_......`	8	85
MIMAT0014579	tgu-miR-217-5p	8	`_......`	3	85
MIMAT0014564	tgu-miR-17a-3p	6	`_......`	1	85
MIMAT0014564	tgu-miR-17a-3p	3	`_......`	8	85
MIMAT0026998	tgu-miR-20a-3p	6	`_......`	1	85
MIMAT0015357	zma-miR399h-5p	2	`_......`	7	85
MIMAT0017374	ssc-miR-143-5p	3	`_......`	8	85
MIMAT0013233	eca-miR-509a-5p	7	`_......`	2	85
MIMAT0013074	eca-miR-217	7	`_......`	2	85
MIMAT0013070	eca-miR-1301	1	`......_`	6	85
MIMAT0026942	mdo-miR-455-3p	2	`_......`	7	85
MIMAT0013681	bmo-miR-2785	1	`_......`	6	85
MIMAT0012367	dps-miR-2553-3p	3	`......_`	8	85
MIMAT0012015	bta-miR-2440	1	`_......`	6	85
MIMAT0011980	bta-miR-2416	1	`_......`	6	85
MIMAT0011923	bta-miR-2377	6	`_......`	1	85
MIMAT0011428	cel-miR-2208a-3p	2	`_......`	7	85
MIMAT0011204	gga-miR-2128	1	`_......`	6	85
MIMAT0010037	mtr-miR2087-3p	2	`_......`	7	85
MIMAT0009958	bta-miR-1301	1	`......_`	6	85
MIMAT0009850	cfa-miR-217	7	`_......`	2	85
MIMAT0009496	bfl-miR-217	7	`_......`	2	85
MIMAT0009425	mmu-miR-1954	6	`_......`	1	85
MIMAT0017340	mmu-miR-1930-3p	3	`_......`	8	85
MIMAT0009267	bta-miR-217	7	`_......`	2	85
MIMAT0008212	ptr-miR-527	6	`......_`	1	85
MIMAT0008073	ptr-miR-217	7	`_......`	2	85
MIMAT0007766	osa-miR1847.1	1	`_......`	6	85
MIMAT0015268	ssc-miR-17-3p	6	`_......`	1	85
MIMAT0015268	ssc-miR-17-3p	3	`_......`	8	85
MIMAT0006649	cfa-miR-17	6	`_......`	1	85
MIMAT0006649	cfa-miR-17	3	`_......`	8	85
MIMAT0026823	mml-miR-143-5p	2	`_......`	7	85
MIMAT0007729	gga-miR-1811	3	`......_`	8	85
MIMAT0007606	gga-miR-1711	2	`_......`	7	85
MIMAT0006136	csa-miR-217	7	`_......`	2	85
MIMAT0006112	cin-miR-217	7	`_......`	2	85
MIMAT0007310	oan-miR-1421ak-3p	6	`_......`	1	85
MIMAT0005976	osa-miR444f	1	`_......`	6	85
MIMAT0005975	osa-miR444e	1	`_......`	6	85
MIMAT0005973	osa-miR444d.2	1	`_......`	6	85
MIMAT0005970	osa-miR444c.2	1	`_......`	6	85
MIMAT0005968	osa-miR444b.2	1	`_......`	6	85
MIMAT0007279	oan-miR-17-3p	6	`_......`	1	85
MIMAT0007279	oan-miR-17-3p	3	`_......`	8	85
MIMAT0007221	oan-miR-217-5p	7	`_......`	2	85
MIMAT0007153	oan-miR-191-3p	3	`_......`	8	85
MIMAT0009169	oan-miR-20a-2-3p	6	`_......`	1	85
MIMAT0007146	oan-miR-20a-1-3p	6	`_......`	1	85
MIMAT0007077	oan-miR-1421o-3p	7	`_......`	2	85
MIMAT0026757	oan-miR-1421j-3p	8	`_......`	3	85
MIMAT0006978	oan-miR-1421h-3p	7	`_......`	2	85
MIMAT0017295	rno-miR-17-2-3p	6	`_......`	1	85
MIMAT0005290	rno-miR-883-3p	8	`_......`	3	85
MIMAT0004975	hsa-miR-509-3-5p	7	`_......`	2	85
MIMAT0004851	mmu-miR-883b-3p	8	`_......`	3	85
MIMAT0004849	mmu-miR-883a-3p	8	`_......`	3	85
MIMAT0026707	mdo-miR-20a-3p	6	`_......`	1	85
MIMAT0004166	mdo-miR-17-3p	6	`_......`	1	85
MIMAT0004166	mdo-miR-17-3p	3	`_......`	8	85
MIMAT0004132	mdo-miR-217	7	`_......`	2	85
MIMAT0026668	mdo-miR-143-5p	2	`_......`	7	85
MIMAT0003816	bta-miR-17-3p	6	`_......`	1	85
MIMAT0003816	bta-miR-17-3p	3	`_......`	8	85
MIMAT0003670	xtr-miR-20a-3p	6	`_......`	1	85
MIMAT0003630	xtr-miR-217	7	`_......`	2	85
MIMAT0003565	xtr-miR-17-3p	6	`_......`	1	85
MIMAT0003565	xtr-miR-17-3p	3	`_......`	8	85
MIMAT0003511	mmu-miR-450b-5p	3	`......_`	8	85
MIMAT0003459	mmu-miR-682	2	`_......`	7	85
MIMAT0005797	hsa-miR-1301-3p	1	`......_`	6	85
MIMAT0006788	gga-miR-455-3p	1	`_......`	6	85
MIMAT0003212	rno-miR-20b-3p	6	`_......`	1	85
MIMAT0003212	rno-miR-20b-3p	3	`_......`	8	85
MIMAT0004788	mmu-miR-20b-3p	6	`_......`	1	85
MIMAT0004788	mmu-miR-20b-3p	3	`_......`	8	85
MIMAT0002972	tni-miR-217	7	`_......`	2	85
MIMAT0002971	fru-miR-217	7	`_......`	2	85
MIMAT0004779	hsa-miR-509-5p	7	`_......`	2	85
MIMAT0002862	hsa-miR-527	6	`......_`	1	85
MIMAT0005457	hsa-miR-518a-5p	6	`......_`	1	85
MIMAT0002722	mne-miR-17-3p	6	`_......`	1	85
MIMAT0002722	mne-miR-17-3p	3	`_......`	8	85
MIMAT0002715	lla-miR-17-3p	6	`_......`	1	85
MIMAT0002715	lla-miR-17-3p	3	`_......`	8	85
MIMAT0002708	sla-miR-17-3p	6	`_......`	1	85
MIMAT0002708	sla-miR-17-3p	3	`_......`	8	85
MIMAT0026597	mml-miR-20a-3p	6	`_......`	1	85
MIMAT0002701	mml-miR-17-3p	6	`_......`	1	85
MIMAT0002701	mml-miR-17-3p	3	`_......`	8	85
MIMAT0002694	ptr-miR-17-3p	6	`_......`	1	85
MIMAT0002694	ptr-miR-17-3p	3	`_......`	8	85
MIMAT0002687	ppy-miR-17-3p	6	`_......`	1	85
MIMAT0002687	ppy-miR-17-3p	3	`_......`	8	85
MIMAT0002680	ppa-miR-17-3p	6	`_......`	1	85
MIMAT0002680	ppa-miR-17-3p	3	`_......`	8	85
MIMAT0002673	age-miR-17-3p	6	`_......`	1	85
MIMAT0002673	age-miR-17-3p	3	`_......`	8	85
MIMAT0002666	lca-miR-17-3p	6	`_......`	1	85
MIMAT0002666	lca-miR-17-3p	3	`_......`	8	85
MIMAT0002659	ggo-miR-17-3p	6	`_......`	1	85
MIMAT0002659	ggo-miR-17-3p	3	`_......`	8	85
MIMAT0002564	ppa-miR-217	7	`_......`	2	85
MIMAT0002563	ggo-miR-217	7	`_......`	2	85
MIMAT0002131	ssc-miR-217	7	`_......`	2	85
MIMAT0031993	dre-miR-455-3p	2	`_......`	7	85
MIMAT0031983	dre-miR-196a-3p	6	`......_`	1	85
MIMAT0003400	dre-miR-20a-3p	6	`_......`	1	85
MIMAT0003400	dre-miR-20a-3p	3	`_......`	8	85
MIMAT0031938	dre-miR-17a-2-3p	6	`_......`	1	85
MIMAT0031938	dre-miR-17a-2-3p	3	`_......`	8	85
MIMAT0003396	dre-miR-17a-3p	6	`_......`	1	85
MIMAT0003396	dre-miR-17a-3p	3	`_......`	8	85
MIMAT0005790	osa-miR444a-3p.2	1	`_......`	6	85
MIMAT0001285	dre-miR-217	7	`_......`	2	85
MIMAT0026517	gga-miR-106-3p	6	`_......`	1	85
MIMAT0026517	gga-miR-106-3p	3	`_......`	8	85
MIMAT0001132	gga-miR-217-5p	7	`_......`	2	85
MIMAT0001115	gga-miR-17-3p	6	`_......`	1	85
MIMAT0001115	gga-miR-17-3p	3	`_......`	8	85
MIMAT0022883	osa-miR166i-5p	3	`_......`	8	85
MIMAT0000887	rno-miR-217-5p	7	`_......`	2	85
MIMAT0017129	rno-miR-143-5p	3	`_......`	8	85
MIMAT0004710	rno-miR-17-1-3p	6	`_......`	1	85
MIMAT0004710	rno-miR-17-1-3p	3	`_......`	8	85
MIMAT0000679	mmu-miR-217-5p	7	`_......`	2	85
MIMAT0000650	mmu-miR-17-3p	6	`_......`	1	85
MIMAT0000650	mmu-miR-17-3p	3	`_......`	8	85
MIMAT0000603	rno-miR-20a-3p	6	`_......`	1	85
MIMAT0004627	mmu-miR-20a-3p	6	`_......`	1	85
MIMAT0004599	hsa-miR-143-5p	3	`_......`	8	85
MIMAT0017009	mmu-miR-106a-3p	6	`_......`	1	85
MIMAT0017009	mmu-miR-106a-3p	3	`_......`	8	85
MIMAT0020777	cel-miR-232-5p	3	`_......`	8	85
MIMAT0000274	hsa-miR-217	7	`_......`	2	85
MIMAT0017006	mmu-miR-143-5p	3	`_......`	8	85
MIMAT0004517	hsa-miR-106a-3p	6	`......_`	1	85
MIMAT0004493	hsa-miR-20a-3p	6	`_......`	1	85
MIMAT0000071	hsa-miR-17-3p	6	`_......`	1	85
MIMAT0000071	hsa-miR-17-3p	3	`_......`	8	85