| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ttgcgtg | 7 | ||
| MIMAT0021543 | asu-miR-100e-3p | 7 | ....... | 1 | 100 |
| MIMAT0035667 | bra-miR9557-5p | 3 | ......_ | 8 | 85 |
| MIMAT0035377 | nve-miR-9421 | 1 | ......_ | 6 | 85 |
| MIMAT0034744 | eca-miR-9166 | 1 | ......_ | 6 | 85 |
| MIMAT0034467 | eca-miR-8938 | 1 | ......_ | 6 | 85 |
| MIMAT0030516 | prd-miR-242-5p | 1 | ......_ | 6 | 85 |
| MIMAT0030433 | bta-miR-7858 | 6 | ......_ | 1 | 85 |
| MIMAT0032216 | lva-miR-242-5p | 1 | ......_ | 6 | 85 |
| MIMAT0032169 | pmi-miR-242-5p | 1 | ......_ | 6 | 85 |
| MIMAT0029760 | cbn-miR-242 | 1 | ......_ | 6 | 85 |
| MIMAT0027542 | hsa-miR-6821-5p | 2 | _...... | 7 | 85 |
| MIMAT0025861 | blv-miR-B2-3p | 1 | _...... | 6 | 85 |
| MIMAT0022171 | osa-miR5535 | 3 | _...... | 8 | 85 |
| MIMAT0021883 | aca-miR-2188-3p | 3 | _...... | 8 | 85 |
| MIMAT0019640 | pma-miR-4606 | 1 | _...... | 6 | 85 |
| MIMAT0019605 | pma-miR-4572 | 3 | ......_ | 8 | 85 |
| MIMAT0019235 | hsa-miR-4520-5p | 3 | _...... | 8 | 85 |
| MIMAT0012351 | dps-miR-2545a-3p | 8 | _...... | 3 | 85 |
| MIMAT0012316 | dps-miR-2545b | 8 | _...... | 3 | 85 |
| MIMAT0012206 | dme-miR-2496-5p | 2 | _...... | 7 | 85 |
| MIMAT0011663 | ppc-miR-242 | 1 | ......_ | 6 | 85 |
| MIMAT0011527 | crm-miR-242 | 1 | ......_ | 6 | 85 |
| MIMAT0009681 | lgi-miR-242b | 1 | ......_ | 6 | 85 |
| MIMAT0009680 | cte-miR-242 | 1 | ......_ | 6 | 85 |
| MIMAT0009647 | spu-miR-242 | 1 | ......_ | 6 | 85 |
| MIMAT0009590 | lgi-miR-242a | 1 | ......_ | 6 | 85 |
| MIMAT0007295 | gga-miR-1434 | 2 | _...... | 7 | 85 |
| MIMAT0006972 | oan-miR-1421e-3p | 1 | _...... | 6 | 85 |
| MIMAT0006872 | oan-miR-1341 | 2 | _...... | 7 | 85 |
| MIMAT0004296 | cbr-miR-242 | 1 | ......_ | 6 | 85 |
| MIMAT0000298 | cel-miR-242 | 1 | ......_ | 6 | 85 |
