| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ttggatc | 7 | ||
| MIMAT0031376 | osa-miR5079b | 2 | ....... | 8 | 100 |
| MIMAT0029955 | osa-miR7692-5p | 7 | ....... | 1 | 100 |
| MIMAT0020578 | osa-miR5079a | 2 | ....... | 8 | 100 |
| MIMAT0012596 | hsv1-miR-H7-3p | 2 | ....... | 8 | 100 |
| MIMAT0036386 | gma-miR9755 | 7 | _...... | 2 | 85 |
| MIMAT0035424 | nve-miR-9465 | 1 | ......_ | 6 | 85 |
| MIMAT0034838 | efu-miR-9232 | 1 | ......_ | 6 | 85 |
| MIMAT0034354 | cfa-miR-8859a | 1 | _...... | 6 | 85 |
| MIMAT0034285 | cfa-miR-8795 | 1 | ......_ | 6 | 85 |
| MIMAT0034256 | gra-miR7493b | 1 | ......_ | 6 | 85 |
| MIMAT0034212 | gra-miR8774 | 1 | ......_ | 6 | 85 |
| MIMAT0034211 | gra-miR8773 | 1 | ......_ | 6 | 85 |
| MIMAT0033428 | str-miR-8384-5p | 2 | _...... | 7 | 85 |
| MIMAT0032850 | ppc-miR-2235b-5p | 8 | ......_ | 3 | 85 |
| MIMAT0032815 | cel-miR-8201-5p | 3 | _...... | 8 | 85 |
| MIMAT0032796 | cel-miR-8191-3p | 8 | ......_ | 3 | 85 |
| MIMAT0032771 | ath-miR8172 | 2 | _...... | 7 | 85 |
| MIMAT0030914 | stu-miR8017 | 6 | ......_ | 1 | 85 |
| MIMAT0030912 | stu-miR8015-5p | 3 | ......_ | 8 | 85 |
| MIMAT0030560 | prd-miR-58-5p | 2 | _...... | 7 | 85 |
| MIMAT0030236 | bdi-miR7748a-5p | 6 | ......_ | 1 | 85 |
| MIMAT0028991 | oan-miR-7420-3p | 3 | _...... | 8 | 85 |
| MIMAT0028860 | mdo-miR-7386g-5p | 3 | ......_ | 8 | 85 |
| MIMAT0028852 | mdo-miR-7386e-5p | 3 | ......_ | 8 | 85 |
| MIMAT0028604 | mdo-miR-7305-5p | 8 | ......_ | 3 | 85 |
| MIMAT0028600 | mdo-miR-7303-5p | 8 | ......_ | 3 | 85 |
| MIMAT0028470 | mdo-miR-7252-5p | 1 | ......_ | 6 | 85 |
| MIMAT0028212 | hsa-miR-7151-5p | 6 | _...... | 1 | 85 |
| MIMAT0026058 | mdm-miR319c | 6 | ......_ | 1 | 85 |
| MIMAT0027815 | mmu-miR-6957-3p | 1 | _...... | 6 | 85 |
| MIMAT0025786 | gga-miR-6681-5p | 3 | _...... | 8 | 85 |
| MIMAT0024812 | hvu-miR6188 | 3 | _...... | 8 | 85 |
| MIMAT0023014 | bra-miR5717 | 3 | ......_ | 8 | 85 |
| MIMAT0023013 | bra-miR5716 | 1 | ......_ | 6 | 85 |
| MIMAT0022392 | ath-miR5632-3p | 1 | ......_ | 6 | 85 |
| MIMAT0022139 | osa-miR5506 | 1 | _...... | 6 | 85 |
| MIMAT0022123 | osa-miR5490 | 1 | ......_ | 6 | 85 |
| MIMAT0022085 | aca-miR-5458 | 7 | _...... | 2 | 85 |
| MIMAT0021945 | aca-miR-363-5p | 2 | _...... | 7 | 85 |
| MIMAT0021207 | mtr-miR4414a-3p | 6 | ......_ | 1 | 85 |
| MIMAT0020730 | bdi-miR5181a-5p | 7 | _...... | 2 | 85 |
| MIMAT0021114 | osa-miR5161 | 3 | _...... | 8 | 85 |
| MIMAT0018460 | csi-miR393 | 6 | ......_ | 1 | 85 |
| MIMAT0018290 | gma-miR4383 | 3 | ......_ | 8 | 85 |
| MIMAT0018032 | vvi-miR3631b-3p | 3 | ......_ | 8 | 85 |
| MIMAT0017935 | aly-miR4246 | 8 | ......_ | 3 | 85 |
| MIMAT0016078 | ppy-miR-640 | 8 | _...... | 3 | 85 |
| MIMAT0015630 | bmo-miR-3422 | 1 | _...... | 6 | 85 |
| MIMAT0015491 | bmo-miR-3303 | 1 | ......_ | 6 | 85 |
| MIMAT0026972 | tgu-miR-363-5p | 2 | _...... | 7 | 85 |
| MIMAT0014310 | aae-miR-263b-3p | 1 | _...... | 6 | 85 |
| MIMAT0014066 | rlcv-miR-rL1-20-3p | 3 | _...... | 8 | 85 |
| MIMAT0013746 | bmo-miR-2832 | 1 | ......_ | 6 | 85 |
| MIMAT0012502 | dsi-miR-976 | 1 | ......_ | 6 | 85 |
| MIMAT0008294 | ptr-miR-640 | 8 | _...... | 3 | 85 |
| MIMAT0007864 | mmu-miR-1897-5p | 3 | ......_ | 8 | 85 |
| MIMAT0006482 | mml-miR-640 | 8 | _...... | 3 | 85 |
| MIMAT0007644 | gga-miR-1740-3p | 8 | ......_ | 3 | 85 |
| MIMAT0007483 | gga-miR-1616 | 1 | _...... | 6 | 85 |
| MIMAT0006924 | oan-miR-1420b-5p | 6 | ......_ | 1 | 85 |
| MIMAT0005174 | ppt-miR1056 | 1 | _...... | 6 | 85 |
| MIMAT0020881 | dme-miR-984-3p | 6 | ......_ | 1 | 85 |
| MIMAT0005492 | dme-miR-976-3p | 1 | ......_ | 6 | 85 |
| MIMAT0004991 | pta-miR159b | 1 | ......_ | 6 | 85 |
| MIMAT0004990 | pta-miR159a | 1 | ......_ | 6 | 85 |
| MIMAT0003310 | hsa-miR-640 | 8 | _...... | 3 | 85 |
