| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ttggctt | 7 | ||
| MIMAT0034982 | efu-miR-9309 | 2 | ....... | 8 | 100 |
| MIMAT0033425 | str-miR-8383-3p | 2 | ....... | 8 | 100 |
| MIMAT0028201 | dev-miR-D24-3p | 2 | ....... | 8 | 100 |
| MIMAT0026172 | cme-miR169g | 7 | ....... | 1 | 100 |
| MIMAT0027906 | mmu-miR-7002-5p | 1 | ....... | 7 | 100 |
| MIMAT0025269 | ptc-miR169ag | 7 | ....... | 1 | 100 |
| MIMAT0023218 | gma-miR169s | 7 | ....... | 1 | 100 |
| MIMAT0020396 | tcc-miR169f | 7 | ....... | 1 | 100 |
| MIMAT0018218 | hvu-miR169 | 7 | ....... | 1 | 100 |
| MIMAT0006552 | vvi-miR169v | 7 | ....... | 1 | 100 |
| MIMAT0007357 | gma-miR169c | 7 | ....... | 1 | 100 |
| MIMAT0026756 | oan-miR-1351-3p | 1 | ....... | 7 | 100 |
| MIMAT0011069 | mtr-miR169f | 7 | ....... | 1 | 100 |
| MIMAT0011064 | mtr-miR169d-5p | 7 | ....... | 1 | 100 |
| MIMAT0001971 | ptc-miR169o | 7 | ....... | 1 | 100 |
| MIMAT0037228 | ata-miR171d-5p | 3 | ......_ | 8 | 85 |
| MIMAT0036704 | oha-miR-135-5p | 3 | _...... | 8 | 85 |
| MIMAT0036595 | tch-miR-135a-5p | 3 | _...... | 8 | 85 |
| MIMAT0036518 | tch-miR-135b-5p | 3 | _...... | 8 | 85 |
| MIMAT0035953 | chi-miR-135b-5p | 3 | _...... | 8 | 85 |
| MIMAT0035952 | chi-miR-135a | 3 | _...... | 8 | 85 |
| MIMAT0035448 | sly-miR9471a-3p | 1 | ......_ | 6 | 85 |
| MIMAT0035442 | sly-miR9471b-3p | 1 | ......_ | 6 | 85 |
| MIMAT0035137 | efu-miR-1842 | 1 | ......_ | 6 | 85 |
| MIMAT0035124 | efu-miR-9349 | 1 | ......_ | 6 | 85 |
| MIMAT0034951 | efu-miR-9186h | 1 | ......_ | 6 | 85 |
| MIMAT0034926 | efu-miR-9186g | 1 | ......_ | 6 | 85 |
| MIMAT0034830 | efu-miR-9228 | 1 | ......_ | 6 | 85 |
| MIMAT0034567 | eca-miR-9025 | 1 | _...... | 6 | 85 |
| MIMAT0033844 | atr-miR8568 | 1 | _...... | 6 | 85 |
| MIMAT0033304 | str-miR-7880b-1-5p | 1 | _...... | 6 | 85 |
| MIMAT0032348 | ssa-miR-135c-5p | 3 | _...... | 8 | 85 |
| MIMAT0032344 | ssa-miR-135b-5p | 3 | _...... | 8 | 85 |
| MIMAT0032342 | ssa-miR-135a-5p | 3 | _...... | 8 | 85 |
| MIMAT0031589 | bbe-miR-135b-5p | 3 | _...... | 8 | 85 |
| MIMAT0031587 | bbe-miR-135a-5p | 3 | _...... | 8 | 85 |
| MIMAT0031458 | ppe-miR169d | 8 | ......_ | 3 | 85 |
| MIMAT0030782 | prd-miR-7918c-5p | 3 | ......_ | 8 | 85 |
| MIMAT0030780 | prd-miR-7918d-5p | 3 | ......_ | 8 | 85 |
| MIMAT0030665 | prd-miR-7915-3p | 3 | _...... | 8 | 85 |
| MIMAT0030608 | prd-miR-7918b-5p | 3 | ......_ | 8 | 85 |
| MIMAT0030606 | prd-miR-7918a-5p | 3 | ......_ | 8 | 85 |
| MIMAT0030584 | prd-miR-7880b-5p | 1 | _...... | 6 | 85 |
| MIMAT0029963 | mtr-miR169i | 8 | ......_ | 3 | 85 |
| MIMAT0029907 | mmu-miR-7688-3p | 3 | _...... | 8 | 85 |
| MIMAT0029811 | mmu-miR-7652-3p | 3 | _...... | 8 | 85 |
| MIMAT0029412 | ipu-miR-135c | 3 | _...... | 8 | 85 |
| MIMAT0029411 | ipu-miR-135b | 3 | _...... | 8 | 85 |
| MIMAT0029410 | ipu-miR-135a | 3 | _...... | 8 | 85 |
| MIMAT0029216 | mes-miR169h | 8 | ......_ | 3 | 85 |
| MIMAT0028585 | mdo-miR-7298-3p | 1 | _...... | 6 | 85 |
| MIMAT0026422 | sbi-miR5568d-5p | 1 | _...... | 6 | 85 |
| MIMAT0026216 | ccr-miR-135c | 3 | _...... | 8 | 85 |
| MIMAT0026187 | cme-miR169t | 8 | ......_ | 3 | 85 |
| MIMAT0026079 | cme-miR169k | 8 | ......_ | 3 | 85 |
| MIMAT0026075 | cme-miR169p | 8 | ......_ | 3 | 85 |
| MIMAT0026074 | cme-miR169s | 8 | ......_ | 3 | 85 |
| MIMAT0026073 | cme-miR169q | 8 | ......_ | 3 | 85 |
| MIMAT0028089 | mmu-miR-7091-3p | 3 | _...... | 8 | 85 |
| MIMAT0027821 | mmu-miR-6960-3p | 6 | ......_ | 1 | 85 |
| MIMAT0027587 | hsa-miR-6842-3p | 1 | ......_ | 6 | 85 |
| MIMAT0027531 | hsa-miR-6815-3p | 1 | _...... | 6 | 85 |
| MIMAT0031172 | ppe-miR169e-5p | 8 | ......_ | 3 | 85 |
| MIMAT0027199 | lus-miR169i | 8 | ......_ | 3 | 85 |
| MIMAT0027139 | lus-miR169e | 8 | ......_ | 3 | 85 |
| MIMAT0024253 | ggo-miR-135b | 3 | _...... | 8 | 85 |
| MIMAT0023211 | gma-miR169p | 8 | ......_ | 3 | 85 |
| MIMAT0022823 | sha-miR-135a | 3 | _...... | 8 | 85 |
| MIMAT0022657 | ola-miR-135b | 3 | _...... | 8 | 85 |
| MIMAT0022547 | ola-miR-135a | 3 | _...... | 8 | 85 |
| MIMAT0021750 | aca-miR-135-5p | 3 | _...... | 8 | 85 |
| MIMAT0021515 | asu-miR-279c-5p | 3 | _...... | 8 | 85 |
| MIMAT0027047 | bdi-miR171d-5p | 3 | ......_ | 8 | 85 |
| MIMAT0020655 | bdi-miR169i | 8 | ......_ | 3 | 85 |
| MIMAT0020403 | tcc-miR169m | 8 | ......_ | 3 | 85 |
| MIMAT0019955 | hsa-miR-4786-3p | 8 | _...... | 3 | 85 |
| MIMAT0019731 | hsa-miR-4662a-5p | 8 | ......_ | 3 | 85 |
| MIMAT0019465 | pma-miR-135b | 3 | _...... | 8 | 85 |
| MIMAT0019463 | pma-miR-135a-5p | 3 | _...... | 8 | 85 |
| MIMAT0019369 | pma-miR-1d | 1 | _...... | 6 | 85 |
| MIMAT0019014 | hsa-miR-4480 | 6 | ......_ | 1 | 85 |
| MIMAT0018335 | gma-miR169e | 6 | ......_ | 1 | 85 |
| MIMAT0018330 | gma-miR169d | 8 | ......_ | 3 | 85 |
| MIMAT0018238 | gma-miR4349 | 3 | ......_ | 8 | 85 |
| MIMAT0022971 | hvu-miR171-5p | 3 | ......_ | 8 | 85 |
| MIMAT0016425 | cin-miR-132-5p | 3 | _...... | 8 | 85 |
| MIMAT0016409 | cin-miR-135-5p | 3 | _...... | 8 | 85 |
| MIMAT0015758 | ppy-miR-135b | 3 | _...... | 8 | 85 |
| MIMAT0015654 | ghr-miR3476-3p | 6 | ......_ | 1 | 85 |
| MIMAT0017737 | ath-miR3434-5p | 3 | ......_ | 8 | 85 |
| MIMAT0017497 | aly-miR169g-5p | 8 | ......_ | 3 | 85 |
| MIMAT0017495 | aly-miR169f-5p | 8 | ......_ | 3 | 85 |
| MIMAT0017493 | aly-miR169e-5p | 8 | ......_ | 3 | 85 |
| MIMAT0017491 | aly-miR169d-5p | 8 | ......_ | 3 | 85 |
| MIMAT0015451 | bmo-miR-3267a | 1 | _...... | 6 | 85 |
| MIMAT0014981 | hsa-miR-3119 | 1 | _...... | 6 | 85 |
| MIMAT0014560 | tgu-miR-135b | 3 | _...... | 8 | 85 |
| MIMAT0014559 | tgu-miR-135a-5p | 3 | _...... | 8 | 85 |
| MIMAT0014410 | cqu-miR-285-5p | 3 | _...... | 8 | 85 |
| MIMAT0014171 | rco-miR169c | 8 | ......_ | 3 | 85 |
| MIMAT0013078 | eca-miR-135a | 3 | _...... | 8 | 85 |
| MIMAT0012952 | eca-miR-135b | 3 | _...... | 8 | 85 |
| MIMAT0013588 | cte-miR-2719 | 1 | _...... | 6 | 85 |
| MIMAT0012561 | aqc-miR168 | 1 | _...... | 6 | 85 |
| MIMAT0012503 | dsi-miR-978b | 7 | _...... | 2 | 85 |
| MIMAT0010194 | bfl-miR-135b | 3 | _...... | 8 | 85 |
| MIMAT0010015 | ppt-miR2078 | 3 | ......_ | 8 | 85 |
| MIMAT0009992 | bfl-miR-135a | 3 | _...... | 8 | 85 |
| MIMAT0009839 | cfa-miR-135b | 3 | _...... | 8 | 85 |
| MIMAT0009229 | bta-miR-135b | 3 | _...... | 8 | 85 |
| MIMAT0009228 | bta-miR-135a | 3 | _...... | 8 | 85 |
| MIMAT0008032 | ptr-miR-135b | 3 | _...... | 8 | 85 |
| MIMAT0010196 | cfa-miR-135a-5p | 3 | _...... | 8 | 85 |
| MIMAT0006546 | vvi-miR169h | 8 | ......_ | 3 | 85 |
| MIMAT0006545 | vvi-miR169b | 8 | ......_ | 3 | 85 |
| MIMAT0006191 | mml-miR-135b-5p | 3 | _...... | 8 | 85 |
| MIMAT0007655 | gga-miR-1749-3p | 1 | ......_ | 6 | 85 |
| MIMAT0007536 | gga-miR-135b | 3 | _...... | 8 | 85 |
| MIMAT0007476 | gga-miR-1610 | 1 | _...... | 6 | 85 |
| MIMAT0007340 | gga-miR-1462-5p | 1 | _...... | 6 | 85 |
| MIMAT0006870 | oan-miR-135b-5p | 3 | _...... | 8 | 85 |
| MIMAT0005624 | bna-miR169m | 8 | ......_ | 3 | 85 |
| MIMAT0005333 | rno-miR-742-3p | 8 | _...... | 3 | 85 |
| MIMAT0004466 | mdv2-miR-M22-3p | 3 | _...... | 8 | 85 |
| MIMAT0011109 | mtr-miR169h | 8 | ......_ | 3 | 85 |
| MIMAT0004109 | mdo-miR-135b-5p | 3 | _...... | 8 | 85 |
| MIMAT0004108 | mdo-miR-135a-5p | 3 | _...... | 8 | 85 |
| MIMAT0004237 | mmu-miR-742-3p | 8 | _...... | 3 | 85 |
| MIMAT0003937 | ath-miR778 | 1 | _...... | 6 | 85 |
| MIMAT0003598 | xtr-miR-135 | 3 | _...... | 8 | 85 |
| MIMAT0017246 | mmu-miR-677-3p | 7 | _...... | 2 | 85 |
| MIMAT0003348 | dre-miR-135a | 3 | _...... | 8 | 85 |
| MIMAT0003052 | tni-miR-135a | 3 | _...... | 8 | 85 |
| MIMAT0003051 | fru-miR-135a | 3 | _...... | 8 | 85 |
| MIMAT0003032 | dre-miR-135b-5p | 3 | _...... | 8 | 85 |
| MIMAT0003031 | tni-miR-135b | 3 | _...... | 8 | 85 |
| MIMAT0003030 | fru-miR-135b | 3 | _...... | 8 | 85 |
| MIMAT0015757 | ppy-miR-135a | 3 | _...... | 8 | 85 |
| MIMAT0002253 | ggo-miR-135a | 3 | _...... | 8 | 85 |
| MIMAT0002252 | ptr-miR-135a | 3 | _...... | 8 | 85 |
| MIMAT0002251 | mml-miR-135a-5p | 3 | _...... | 8 | 85 |
| MIMAT0002250 | ppa-miR-135 | 3 | _...... | 8 | 85 |
| MIMAT0002249 | age-miR-135 | 3 | _...... | 8 | 85 |
| MIMAT0002248 | lla-miR-135 | 3 | _...... | 8 | 85 |
| MIMAT0002121 | ssc-miR-135 | 3 | _...... | 8 | 85 |
| MIMAT0001975 | ptc-miR169s | 8 | ......_ | 3 | 85 |
| MIMAT0001970 | ptc-miR169n-5p | 8 | ......_ | 3 | 85 |
| MIMAT0001833 | dre-miR-135c | 3 | _...... | 8 | 85 |
| MIMAT0015200 | zma-miR171e-5p | 3 | ......_ | 8 | 85 |
| MIMAT0015160 | zma-miR171d-5p | 3 | ......_ | 8 | 85 |
| MIMAT0001099 | gga-miR-135a-5p | 3 | _...... | 8 | 85 |
| MIMAT0022879 | osa-miR171e-5p | 3 | ......_ | 8 | 85 |
| MIMAT0000911 | ath-miR169g-5p | 8 | ......_ | 3 | 85 |
| MIMAT0000910 | ath-miR169f-5p | 8 | ......_ | 3 | 85 |
| MIMAT0000909 | ath-miR169e | 8 | ......_ | 3 | 85 |
| MIMAT0000908 | ath-miR169d | 8 | ......_ | 3 | 85 |
| MIMAT0000841 | rno-miR-135a-5p | 3 | _...... | 8 | 85 |
| MIMAT0000758 | hsa-miR-135b-5p | 3 | _...... | 8 | 85 |
| MIMAT0000612 | mmu-miR-135b-5p | 3 | _...... | 8 | 85 |
| MIMAT0000611 | rno-miR-135b-5p | 3 | _...... | 8 | 85 |
| MIMAT0000428 | hsa-miR-135a-5p | 3 | _...... | 8 | 85 |
| MIMAT0000147 | mmu-miR-135a-5p | 3 | _...... | 8 | 85 |
