| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ttgggaat | 8 | ||
| MIMAT0028169 | dev-miR-D1-5p | 1 | ........ | 8 | 100 |
| MIMAT0036236 | chi-miR-450-3p | 2 | ......._ | 8 | 87 |
| MIMAT0035472 | sly-miR9477-3p | 1 | ......._ | 7 | 87 |
| MIMAT0034205 | gra-miR482c | 7 | ......._ | 1 | 87 |
| MIMAT0032494 | ssa-miR-205a-2-3p | 7 | _....... | 1 | 87 |
| MIMAT0032493 | ssa-miR-205a-3p | 7 | _....... | 1 | 87 |
| MIMAT0029372 | lja-miR7545 | 1 | ......._ | 7 | 87 |
| MIMAT0027706 | mmu-miR-6903-5p | 1 | ......._ | 7 | 87 |
| MIMAT0025844 | hsa-miR-6716-5p | 1 | _....... | 7 | 87 |
| MIMAT0025801 | gga-miR-6695-5p | 1 | ......._ | 7 | 87 |
| MIMAT0025228 | ptc-miR6427-3p | 2 | _....... | 8 | 87 |
| MIMAT0025095 | mmu-miR-6352 | 2 | ......._ | 8 | 87 |
| MIMAT0031169 | ppe-miR482c-3p | 7 | ......._ | 1 | 87 |
| MIMAT0027273 | ppe-miR482b-3p | 8 | ......._ | 2 | 87 |
| MIMAT0021002 | gma-miR482c-3p | 7 | ......._ | 1 | 87 |
| MIMAT0018028 | vvi-miR3630-3p | 2 | ......._ | 8 | 87 |
| MIMAT0015718 | ssc-miR-450c-3p | 2 | ......._ | 8 | 87 |
| MIMAT0014919 | mmu-miR-3100-5p | 1 | ......._ | 7 | 87 |
| MIMAT0017380 | ssc-miR-450b-3p | 1 | ......._ | 7 | 87 |
| MIMAT0013221 | eca-miR-450b-3p | 1 | ......._ | 7 | 87 |
| MIMAT0012429 | dsi-miR-991-5p | 7 | ......._ | 1 | 87 |
| MIMAT0011765 | zma-miR2118f | 7 | ......._ | 1 | 87 |
| MIMAT0011757 | osa-miR2118r | 7 | ......._ | 1 | 87 |
| MIMAT0011744 | osa-miR2118e | 7 | ......._ | 1 | 87 |
| MIMAT0011165 | mdm-miR482a-3p | 7 | ......._ | 1 | 87 |
| MIMAT0026878 | mml-miR-450a-1-3p | 2 | ......._ | 8 | 87 |
| MIMAT0005758 | ssy-miR-513c | 7 | ......._ | 1 | 87 |
| MIMAT0020890 | dme-miR-991-5p | 8 | ......._ | 2 | 87 |
| MIMAT0003512 | mmu-miR-450b-3p | 2 | ......._ | 8 | 87 |
| MIMAT0017182 | mmu-miR-450a-1-3p | 2 | ......._ | 8 | 87 |
| MIMAT0022700 | hsa-miR-450a-1-3p | 2 | ......._ | 8 | 87 |
| MIMAT0032787 | cel-miR-8187-5p | 1 | .c...... | 8 | 87 |
| MIMAT0032251 | rgl-miR7807a-3p | 1 | ......t. | 8 | 87 |
| MIMAT0030093 | bdi-miR395o-5p | 8 | .a...... | 1 | 87 |
| MIMAT0022584 | ola-miR-150 | 8 | ......g. | 1 | 87 |
| MIMAT0020008 | sko-miR-4817-5p | 1 | ......t. | 8 | 87 |
| MIMAT0019857 | hsa-miR-4733-5p | 8 | ......t. | 1 | 87 |
| MIMAT0020849 | dme-miR-193-5p | 1 | ......t. | 8 | 87 |
| MIMAT0037221 | ata-miR2118b-3p | 1 | __...... | 6 | 75 |
| MIMAT0037181 | ata-miR2118a-3p | 1 | __...... | 6 | 75 |
| MIMAT0037126 | ata-miR166b-5p | 1 | __...... | 6 | 75 |
| MIMAT0037076 | ssc-miR-9857-5p | 3 | ......__ | 8 | 75 |
| MIMAT0036813 | oha-miR-204-1-3p | 3 | _......_ | 8 | 75 |
| MIMAT0036736 | oha-miR-150 | 8 | ......__ | 3 | 75 |
| MIMAT0036051 | chi-miR-204-3p | 3 | _......_ | 8 | 75 |
| MIMAT0035980 | chi-miR-150 | 8 | ......__ | 3 | 75 |
| MIMAT0035562 | dvi-miR-193-5p | 3 | ......__ | 8 | 75 |
| MIMAT0035332 | gsa-miR-9394a-5p | 2 | __...... | 7 | 75 |
| MIMAT0035077 | efu-miR-150 | 8 | ......__ | 3 | 75 |
| MIMAT0034500 | eca-miR-8965 | 6 | _......_ | 1 | 75 |
| MIMAT0034344 | cfa-miR-8849 | 3 | ......__ | 8 | 75 |
| MIMAT0034298 | cfa-miR-8808 | 1 | _......_ | 6 | 75 |
| MIMAT0033852 | atr-miR8570 | 3 | ......__ | 8 | 75 |
| MIMAT0033514 | sma-miR-36b-5p | 2 | __...... | 7 | 75 |
| MIMAT0033393 | str-miR-8375-3p | 2 | ......__ | 7 | 75 |
| MIMAT0033375 | str-miR-7880p-3p | 2 | ......__ | 7 | 75 |
| MIMAT0033132 | ppc-miR-8304a-5p | 2 | ......__ | 7 | 75 |
| MIMAT0033111 | ppc-miR-8297-5p | 6 | __...... | 1 | 75 |
| MIMAT0033065 | ppc-miR-8281-5p | 2 | _......_ | 7 | 75 |
| MIMAT0033011 | ppc-miR-8263-3p | 3 | _......_ | 8 | 75 |
| MIMAT0032650 | ssa-miR-459-3p | 3 | __...... | 8 | 75 |
| MIMAT0032383 | ssa-miR-150-5p | 8 | ......__ | 3 | 75 |
| MIMAT0031811 | cpa-miR172b | 1 | __...... | 6 | 75 |
| MIMAT0031810 | cpa-miR172a | 1 | __...... | 6 | 75 |
| MIMAT0031696 | bbe-miR-4873-5p | 8 | _......_ | 3 | 75 |
| MIMAT0031180 | hsa-miR-7977 | 6 | _......_ | 1 | 75 |
| MIMAT0030273 | bdi-miR7763-3p | 6 | __...... | 1 | 75 |
| MIMAT0030034 | oar-miR-150 | 8 | ......__ | 3 | 75 |
| MIMAT0029890 | mmu-miR-7684-5p | 3 | _......_ | 8 | 75 |
| MIMAT0029630 | crm-miR-7611 | 2 | _......_ | 7 | 75 |
| MIMAT0029426 | ipu-miR-150 | 8 | ......__ | 3 | 75 |
| MIMAT0029056 | gga-miR-7451-5p | 3 | _......_ | 8 | 75 |
| MIMAT0028501 | mdo-miR-7266-3p | 1 | ......__ | 6 | 75 |
| MIMAT0028488 | mdo-miR-7261-5p | 2 | _......_ | 7 | 75 |
| MIMAT0028465 | mdo-miR-7249-3p | 1 | _......_ | 6 | 75 |
| MIMAT0028454 | mdo-miR-7244-5p | 3 | _......_ | 8 | 75 |
| MIMAT0028317 | mml-miR-3938-3p | 7 | __...... | 2 | 75 |
| MIMAT0028312 | mml-miR-6827-5p | 2 | _......_ | 7 | 75 |
| MIMAT0026305 | ccr-miR-459-3p | 3 | __...... | 8 | 75 |
| MIMAT0028054 | mmu-miR-7074-5p | 1 | _......_ | 6 | 75 |
| MIMAT0028008 | mmu-miR-7052-5p | 3 | _......_ | 8 | 75 |
| MIMAT0027832 | mmu-miR-3547-5p | 2 | _......_ | 7 | 75 |
| MIMAT0027818 | mmu-miR-6959-5p | 1 | _......_ | 6 | 75 |
| MIMAT0027528 | hsa-miR-6814-5p | 6 | ......__ | 1 | 75 |
| MIMAT0027460 | hsa-miR-6780a-5p | 1 | ......__ | 6 | 75 |
| MIMAT0027379 | hsa-miR-6739-5p | 1 | _......_ | 6 | 75 |
| MIMAT0027367 | hsa-miR-6733-5p | 1 | _......_ | 6 | 75 |
| MIMAT0027357 | hsa-miR-6728-5p | 1 | ......__ | 6 | 75 |
| MIMAT0025725 | gga-miR-6629-5p | 2 | _......_ | 7 | 75 |
| MIMAT0025526 | han-miR3630-3p | 3 | _......_ | 8 | 75 |
| MIMAT0025482 | hsa-miR-6513-5p | 2 | ......__ | 7 | 75 |
| MIMAT0025365 | ssc-miR-150 | 8 | ......__ | 3 | 75 |
| MIMAT0025289 | hbr-miR408b | 3 | _......_ | 8 | 75 |
| MIMAT0025210 | ptc-miR6471 | 2 | ......__ | 7 | 75 |
| MIMAT0025157 | mmu-miR-6405 | 2 | _......_ | 7 | 75 |
| MIMAT0025156 | mmu-miR-6404 | 2 | _......_ | 7 | 75 |
| MIMAT0025117 | mmu-miR-6373 | 3 | _......_ | 8 | 75 |
| MIMAT0025112 | mmu-miR-6368 | 2 | _......_ | 7 | 75 |
| MIMAT0024945 | hme-miR-1b | 1 | _......_ | 6 | 75 |
| MIMAT0024878 | osa-miR6255 | 1 | _......_ | 6 | 75 |
| MIMAT0024493 | mse-miR-1b | 1 | _......_ | 6 | 75 |
| MIMAT0024391 | ppy-miR-3938 | 7 | __...... | 2 | 75 |
| MIMAT0024340 | mml-miR-3122 | 2 | ......__ | 7 | 75 |
| MIMAT0024217 | ggo-miR-150 | 8 | ......__ | 3 | 75 |
| MIMAT0023963 | cgr-miR-450b-3p | 3 | ......__ | 8 | 75 |
| MIMAT0023170 | gma-miR393b | 2 | ......__ | 7 | 75 |
| MIMAT0022806 | sha-miR-150 | 8 | ......__ | 3 | 75 |
| MIMAT0022790 | sha-miR-204 | 3 | _......_ | 8 | 75 |
| MIMAT0022766 | vun-miR482 | 8 | _......_ | 3 | 75 |
| MIMAT0022505 | mmu-miR-5710 | 3 | ......__ | 8 | 75 |
| MIMAT0022100 | aca-miR-5467 | 6 | _......_ | 1 | 75 |
| MIMAT0021854 | aca-miR-204a-3p | 3 | _......_ | 8 | 75 |
| MIMAT0021784 | aca-miR-150-5p | 8 | ......__ | 3 | 75 |
| MIMAT0021630 | gma-miR408b-5p | 2 | _......_ | 7 | 75 |
| MIMAT0021250 | mtr-miR2643b-3p | 2 | ......__ | 7 | 75 |
| MIMAT0027083 | bdi-miR5178-5p | 2 | ......__ | 7 | 75 |
| MIMAT0020638 | mmu-miR-5127 | 8 | ......__ | 3 | 75 |
| MIMAT0020552 | osa-miR5072 | 8 | __...... | 3 | 75 |
| MIMAT0020523 | ath-miR5019 | 3 | ......__ | 8 | 75 |
| MIMAT0020452 | bfl-miR-4873 | 8 | _......_ | 3 | 75 |
| MIMAT0019707 | hsa-miR-4646-5p | 3 | _......_ | 8 | 75 |
| MIMAT0018998 | hsa-miR-4471 | 1 | _......_ | 6 | 75 |
| MIMAT0018940 | hsa-miR-4425 | 3 | ......__ | 8 | 75 |
| MIMAT0018473 | csi-miR472 | 8 | _......_ | 3 | 75 |
| MIMAT0018353 | hsa-miR-3938 | 7 | __...... | 2 | 75 |
| MIMAT0018240 | gma-miR4351 | 2 | ......__ | 7 | 75 |
| MIMAT0018187 | hsa-miR-3913-5p | 2 | ......__ | 7 | 75 |
| MIMAT0018172 | mghv-miR-M1-13-5p | 1 | _......_ | 6 | 75 |
| MIMAT0018608 | ame-miR-3739 | 1 | ......__ | 6 | 75 |
| MIMAT0018143 | pab-miR3710 | 1 | _......_ | 6 | 75 |
| MIMAT0018042 | vvi-miR3633b-3p | 7 | _......_ | 2 | 75 |
| MIMAT0018036 | vvi-miR3632-3p | 7 | _......_ | 2 | 75 |
| MIMAT0017930 | aly-miR4241 | 3 | ......__ | 8 | 75 |
| MIMAT0016774 | cin-miR-4166-5p | 1 | _......_ | 6 | 75 |
| MIMAT0017837 | rno-miR-3564 | 1 | _......_ | 6 | 75 |
| MIMAT0016328 | ahy-miR408-5p | 2 | _......_ | 7 | 75 |
| MIMAT0016222 | ppy-miR-1302 | 1 | ......__ | 6 | 75 |
| MIMAT0015895 | ppy-miR-450b-3p | 1 | ......__ | 6 | 75 |
| MIMAT0015774 | ppy-miR-150 | 8 | ......__ | 3 | 75 |
| MIMAT0017769 | esi-miR3454e-5p | 6 | _......_ | 1 | 75 |
| MIMAT0017761 | esi-miR3460-5p | 1 | __...... | 6 | 75 |
| MIMAT0017759 | esi-miR3454b-5p | 6 | _......_ | 1 | 75 |
| MIMAT0017751 | esi-miR3454c-5p | 6 | _......_ | 1 | 75 |
| MIMAT0017747 | esi-miR3454a-5p | 6 | _......_ | 1 | 75 |
| MIMAT0017721 | aly-miR3444a-5p | 1 | ......__ | 6 | 75 |
| MIMAT0017676 | aly-miR158b-3p | 6 | ......__ | 1 | 75 |
| MIMAT0017422 | aly-miR158a-3p | 6 | ......__ | 1 | 75 |
| MIMAT0014984 | hsa-miR-3122 | 2 | ......__ | 7 | 75 |
| MIMAT0014689 | hsv1-miR-H12 | 1 | ......__ | 6 | 75 |
| MIMAT0026961 | tgu-miR-2963-5p | 8 | _......_ | 3 | 75 |
| MIMAT0014352 | hsv2-miR-H9-3p | 6 | _......_ | 1 | 75 |
| MIMAT0013788 | bmo-miR-1b-3p | 1 | _......_ | 6 | 75 |
| MIMAT0013011 | eca-miR-150 | 8 | ......__ | 3 | 75 |
| MIMAT0013010 | eca-miR-1302e | 1 | ......__ | 6 | 75 |
| MIMAT0012969 | eca-miR-1302d | 1 | ......__ | 6 | 75 |
| MIMAT0012934 | eca-miR-1302b | 1 | ......__ | 6 | 75 |
| MIMAT0012907 | eca-miR-1302 | 1 | ......__ | 6 | 75 |
| MIMAT0012748 | mdo-miR-150-5p | 8 | ......__ | 3 | 75 |
| MIMAT0013627 | bmo-miR-2757-5p | 3 | __...... | 8 | 75 |
| MIMAT0013411 | mtr-miR2643a | 2 | ......__ | 7 | 75 |
| MIMAT0012277 | dps-miR-193-5p | 3 | ......__ | 8 | 75 |
| MIMAT0012203 | dme-miR-2494-3p | 6 | _......_ | 1 | 75 |
| MIMAT0020913 | dme-miR-2492-5p | 1 | ......__ | 6 | 75 |
| MIMAT0012024 | bta-miR-2447 | 3 | _......_ | 8 | 75 |
| MIMAT0011914 | bta-miR-2370-5p | 1 | _......_ | 6 | 75 |
| MIMAT0011173 | pvu-miR482-3p | 8 | _......_ | 3 | 75 |
| MIMAT0010202 | hsv2-miR-H3 | 2 | ......__ | 7 | 75 |
| MIMAT0010025 | ppt-miR1023e-3p | 2 | __...... | 7 | 75 |
| MIMAT0009459 | mmu-miR-1982-5p | 1 | ......__ | 6 | 75 |
| MIMAT0009424 | mmu-miR-1953 | 1 | _......_ | 6 | 75 |
| MIMAT0008152 | ptr-miR-450b | 1 | ......__ | 6 | 75 |
| MIMAT0008044 | ptr-miR-150 | 8 | ......__ | 3 | 75 |
| MIMAT0008021 | ptr-miR-1302 | 1 | ......__ | 6 | 75 |
| MIMAT0008011 | ptr-miR-1292 | 1 | _......_ | 6 | 75 |
| MIMAT0006602 | cfa-miR-150 | 8 | ......__ | 3 | 75 |
| MIMAT0006334 | mml-miR-450b-3p | 1 | ......__ | 6 | 75 |
| MIMAT0006211 | mml-miR-150-5p | 8 | ......__ | 3 | 75 |
| MIMAT0007364 | gma-miR482a-3p | 8 | _......_ | 3 | 75 |
| MIMAT0007090 | oan-miR-150-5p | 8 | ......__ | 3 | 75 |
| MIMAT0005943 | hsa-miR-1292-5p | 1 | _......_ | 6 | 75 |
| MIMAT0005890 | hsa-miR-1302 | 1 | ......__ | 6 | 75 |
| MIMAT0005107 | ppt-miR1023c-3p | 2 | __...... | 7 | 75 |
| MIMAT0004364 | ppt-miR893 | 2 | ......__ | 7 | 75 |
| MIMAT0022936 | mtr-miR393b-3p | 2 | ......__ | 7 | 75 |
| MIMAT0026720 | hsa-miR-887-5p | 2 | ......__ | 7 | 75 |
| MIMAT0004910 | hsa-miR-450b-3p | 1 | ......__ | 6 | 75 |
| MIMAT0003845 | bta-miR-150 | 8 | ......__ | 3 | 75 |
| MIMAT0004836 | ebv-miR-BART19-5p | 8 | __...... | 3 | 75 |
| MIMAT0003606 | xtr-miR-150 | 8 | ......__ | 3 | 75 |
| MIMAT0002061 | ptc-miR472b | 8 | _......_ | 3 | 75 |
| MIMAT0022903 | ptc-miR171h-5p | 3 | ......__ | 8 | 75 |
| MIMAT0022902 | ptc-miR171g-5p | 3 | ......__ | 8 | 75 |
| MIMAT0003408 | dre-miR-459-3p | 3 | __...... | 8 | 75 |
| MIMAT0001846 | dre-miR-150 | 8 | ......__ | 3 | 75 |
| MIMAT0001587 | osa-miR438 | 6 | _......_ | 1 | 75 |
| MIMAT0017183 | rno-miR-450a-3p | 3 | ......__ | 8 | 75 |
| MIMAT0004739 | rno-miR-204-3p | 3 | _......_ | 8 | 75 |
| MIMAT0000853 | rno-miR-150-5p | 8 | ......__ | 3 | 75 |
| MIMAT0000451 | hsa-miR-150-5p | 8 | ......__ | 3 | 75 |
| MIMAT0022693 | hsa-miR-204-3p | 3 | _......_ | 8 | 75 |
| MIMAT0017002 | mmu-miR-204-3p | 3 | _......_ | 8 | 75 |
| MIMAT0000176 | ath-miR158a-3p | 6 | ......__ | 1 | 75 |
| MIMAT0000160 | mmu-miR-150-5p | 8 | ......__ | 3 | 75 |
| MIMAT0020787 | dme-miR-6-1-5p | 2 | __...... | 7 | 75 |
