| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ttggtgg | 7 | ||
| MIMAT0033067 | ppc-miR-8282a-5p | 7 | ....... | 1 | 100 |
| MIMAT0027768 | mmu-miR-6934-5p | 1 | ....... | 7 | 100 |
| MIMAT0022443 | ath-miR5665 | 1 | ....... | 7 | 100 |
| MIMAT0021683 | sbi-miR5385 | 8 | ....... | 2 | 100 |
| MIMAT0015463 | bmo-miR-3278 | 1 | ....... | 7 | 100 |
| MIMAT0014672 | hma-miR-3005 | 1 | ....... | 7 | 100 |
| MIMAT0017138 | rno-miR-181a-2-3p | 8 | ....... | 2 | 100 |
| MIMAT0037293 | ame-miR-9888 | 1 | _...... | 6 | 85 |
| MIMAT0037215 | ata-miR1432-3p | 1 | ......_ | 6 | 85 |
| MIMAT0036299 | chi-miR-876-3p | 1 | _...... | 6 | 85 |
| MIMAT0036140 | chi-miR-329a-5p | 3 | ......_ | 8 | 85 |
| MIMAT0035732 | rno-miR-1896 | 1 | _...... | 6 | 85 |
| MIMAT0035592 | dvi-miR-971-3p | 1 | ......_ | 6 | 85 |
| MIMAT0035351 | gsa-miR-9401-3p | 3 | _...... | 8 | 85 |
| MIMAT0035144 | efu-miR-9186i | 1 | _...... | 6 | 85 |
| MIMAT0034876 | efu-miR-9257 | 1 | ......_ | 6 | 85 |
| MIMAT0034526 | eca-miR-8989 | 2 | _...... | 7 | 85 |
| MIMAT0034189 | gra-miR8759 | 1 | _...... | 6 | 85 |
| MIMAT0034037 | gra-miR8666 | 1 | ......_ | 6 | 85 |
| MIMAT0033583 | sma-miR-8439-3p | 1 | ......_ | 6 | 85 |
| MIMAT0030576 | prd-miR-9b-5p | 3 | ......_ | 8 | 85 |
| MIMAT0030430 | hsa-miR-7855-5p | 1 | ......_ | 6 | 85 |
| MIMAT0029373 | lja-miR7546 | 1 | ......_ | 6 | 85 |
| MIMAT0029040 | gga-miR-7443-5p | 1 | _...... | 6 | 85 |
| MIMAT0028277 | mml-miR-7171-3p | 1 | _...... | 6 | 85 |
| MIMAT0026055 | mdm-miR7124b | 6 | ......_ | 1 | 85 |
| MIMAT0026054 | mdm-miR7124a | 6 | ......_ | 1 | 85 |
| MIMAT0028040 | mmu-miR-6769b-5p | 3 | _...... | 8 | 85 |
| MIMAT0027804 | mmu-miR-6952-5p | 2 | _...... | 7 | 85 |
| MIMAT0027660 | hsa-miR-6880-5p | 1 | _...... | 6 | 85 |
| MIMAT0027620 | hsa-miR-6769b-5p | 1 | _...... | 6 | 85 |
| MIMAT0025822 | gga-miR-6712-5p | 3 | _...... | 8 | 85 |
| MIMAT0025743 | gga-miR-6646-3p | 3 | _...... | 8 | 85 |
| MIMAT0025701 | gga-miR-6607-5p | 3 | ......_ | 8 | 85 |
| MIMAT0025070 | rno-miR-6331 | 3 | ......_ | 8 | 85 |
| MIMAT0024998 | hme-miR-971 | 1 | ......_ | 6 | 85 |
| MIMAT0024796 | hbr-miR6175 | 1 | _...... | 6 | 85 |
| MIMAT0024786 | hbr-miR6168 | 3 | ......_ | 8 | 85 |
| MIMAT0024686 | nta-miR171a | 3 | ......_ | 8 | 85 |
| MIMAT0024238 | ggo-miR-654 | 1 | _...... | 6 | 85 |
| MIMAT0022467 | gma-miR5679 | 1 | ......_ | 6 | 85 |
| MIMAT0022328 | cin-miR-5596b-3p | 2 | _...... | 7 | 85 |
| MIMAT0020555 | osa-miR5073 | 3 | ......_ | 8 | 85 |
| MIMAT0020519 | ath-miR5015 | 1 | ......_ | 6 | 85 |
| MIMAT0019858 | hsa-miR-4733-3p | 6 | _...... | 1 | 85 |
| MIMAT0019324 | oar-miR-541-3p | 1 | _...... | 6 | 85 |
| MIMAT0018978 | hsa-miR-4456 | 3 | _...... | 8 | 85 |
| MIMAT0018899 | tca-miR-3897-3p | 3 | _...... | 8 | 85 |
| MIMAT0018748 | tca-miR-9d-5p | 3 | ......_ | 8 | 85 |
| MIMAT0018544 | ame-miR-971 | 1 | ......_ | 6 | 85 |
| MIMAT0016391 | gga-miR-3540 | 2 | _...... | 7 | 85 |
| MIMAT0016116 | ppy-miR-876-3p | 1 | _...... | 6 | 85 |
| MIMAT0016087 | ppy-miR-654-5p | 1 | _...... | 6 | 85 |
| MIMAT0015990 | ppy-miR-541 | 1 | _...... | 6 | 85 |
| MIMAT0017623 | aly-miR839-5p | 6 | ......_ | 1 | 85 |
| MIMAT0014745 | api-miR-971 | 1 | ......_ | 6 | 85 |
| MIMAT0015332 | zma-miR171n-5p | 3 | ......_ | 8 | 85 |
| MIMAT0013856 | bta-miR-2898 | 1 | _...... | 6 | 85 |
| MIMAT0013168 | eca-miR-541 | 1 | _...... | 6 | 85 |
| MIMAT0013122 | eca-miR-876-3p | 1 | _...... | 6 | 85 |
| MIMAT0012985 | eca-miR-1905c | 8 | _...... | 3 | 85 |
| MIMAT0026951 | mml-miR-541-3p | 1 | _...... | 6 | 85 |
| MIMAT0013671 | bmo-miR-2808c | 1 | _...... | 6 | 85 |
| MIMAT0013580 | cte-miR-2711 | 1 | ......_ | 6 | 85 |
| MIMAT0012356 | dps-miR-2548-5p | 1 | _...... | 6 | 85 |
| MIMAT0012226 | dps-miR-971-3p | 1 | ......_ | 6 | 85 |
| MIMAT0011555 | crm-miR-79-5p | 3 | ......_ | 8 | 85 |
| MIMAT0009754 | aqu-miR-2021-3p | 1 | _...... | 6 | 85 |
| MIMAT0009343 | bta-miR-541 | 1 | _...... | 6 | 85 |
| MIMAT0008327 | ptr-miR-876 | 1 | _...... | 6 | 85 |
| MIMAT0007924 | sly-miR171c | 3 | ......_ | 8 | 85 |
| MIMAT0007910 | sly-miR1918 | 3 | ......_ | 8 | 85 |
| MIMAT0006644 | cfa-miR-1838 | 6 | _...... | 1 | 85 |
| MIMAT0006520 | mml-miR-876-3p | 1 | _...... | 6 | 85 |
| MIMAT0006495 | mml-miR-654-5p | 1 | _...... | 6 | 85 |
| MIMAT0007457 | gga-miR-1594 | 1 | _...... | 6 | 85 |
| MIMAT0007410 | gga-miR-1553-3p | 3 | _...... | 8 | 85 |
| MIMAT0005147 | ppt-miR1038-3p | 3 | _...... | 8 | 85 |
| MIMAT0005487 | dme-miR-971-3p | 1 | ......_ | 6 | 85 |
| MIMAT0004925 | hsa-miR-876-3p | 1 | _...... | 6 | 85 |
| MIMAT0004920 | hsa-miR-541-3p | 1 | _...... | 6 | 85 |
| MIMAT0003330 | hsa-miR-654-5p | 1 | _...... | 6 | 85 |
| MIMAT0003166 | mmu-miR-546 | 2 | _...... | 7 | 85 |
| MIMAT0015198 | zma-miR171c-5p | 3 | ......_ | 8 | 85 |
| MIMAT0020322 | cel-miR-79-5p | 3 | ......_ | 8 | 85 |
