| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ttggtgtt | 8 | ||
| MIMAT0035592 | dvi-miR-971-3p | 1 | ........ | 8 | 100 |
| MIMAT0034876 | efu-miR-9257 | 1 | ........ | 8 | 100 |
| MIMAT0024998 | hme-miR-971 | 1 | ........ | 8 | 100 |
| MIMAT0020519 | ath-miR5015 | 1 | ........ | 8 | 100 |
| MIMAT0018544 | ame-miR-971 | 1 | ........ | 8 | 100 |
| MIMAT0014745 | api-miR-971 | 1 | ........ | 8 | 100 |
| MIMAT0012226 | dps-miR-971-3p | 1 | ........ | 8 | 100 |
| MIMAT0005487 | dme-miR-971-3p | 1 | ........ | 8 | 100 |
| MIMAT0037215 | ata-miR1432-3p | 1 | ......._ | 7 | 87 |
| MIMAT0034986 | efu-miR-9312 | 7 | _....... | 1 | 87 |
| MIMAT0034477 | eca-miR-8948 | 1 | _....... | 7 | 87 |
| MIMAT0034232 | gra-miR8782 | 2 | ......._ | 8 | 87 |
| MIMAT0029035 | gga-miR-7440-3p | 2 | ......._ | 8 | 87 |
| MIMAT0028648 | mdo-miR-7324-5p | 8 | _....... | 2 | 87 |
| MIMAT0019877 | hsa-miR-3591-3p | 8 | _....... | 2 | 87 |
| MIMAT0018695 | tca-miR-3832-3p | 7 | ......._ | 1 | 87 |
| MIMAT0018171 | mghv-miR-M1-12-3p | 2 | ......._ | 8 | 87 |
| MIMAT0016805 | cin-miR-4187-5p | 2 | ......._ | 8 | 87 |
| MIMAT0017893 | rno-miR-3591 | 7 | _....... | 1 | 87 |
| MIMAT0013580 | cte-miR-2711 | 1 | ......._ | 7 | 87 |
| MIMAT0012357 | dps-miR-2548-3p | 2 | ......._ | 8 | 87 |
| MIMAT0026573 | mml-miR-21-3p | 8 | _....... | 2 | 87 |
| MIMAT0002180 | kshv-miR-K12-10b | 1 | _....... | 7 | 87 |
| MIMAT0004494 | hsa-miR-21-3p | 8 | _....... | 2 | 87 |
| MIMAT0034037 | gra-miR8666 | 1 | ......a. | 8 | 87 |
| MIMAT0021683 | sbi-miR5385 | 8 | ......g. | 1 | 87 |
| MIMAT0015463 | bmo-miR-3278 | 1 | ......g. | 8 | 87 |
| MIMAT0017138 | rno-miR-181a-2-3p | 8 | ......g. | 1 | 87 |
| MIMAT0036140 | chi-miR-329a-5p | 3 | ......__ | 8 | 75 |
| MIMAT0035345 | gsa-miR-9399-3p | 1 | _......_ | 6 | 75 |
| MIMAT0034780 | efu-miR-9198b | 2 | ......__ | 7 | 75 |
| MIMAT0034532 | eca-miR-8986b | 1 | _......_ | 6 | 75 |
| MIMAT0033583 | sma-miR-8439-3p | 1 | ......__ | 6 | 75 |
| MIMAT0033170 | ppc-miR-8316-3p | 2 | _......_ | 7 | 75 |
| MIMAT0033067 | ppc-miR-8282a-5p | 7 | ......__ | 2 | 75 |
| MIMAT0031861 | lus-miR398f | 1 | __...... | 6 | 75 |
| MIMAT0031619 | bbe-miR-2060a-3p | 7 | ......__ | 2 | 75 |
| MIMAT0031535 | ppe-miR3627-3p | 1 | _......_ | 6 | 75 |
| MIMAT0031181 | hsa-miR-7978 | 3 | _......_ | 8 | 75 |
| MIMAT0030576 | prd-miR-9b-5p | 3 | ......__ | 8 | 75 |
| MIMAT0030563 | prd-miR-7911c-3p | 3 | _......_ | 8 | 75 |
| MIMAT0030430 | hsa-miR-7855-5p | 1 | ......__ | 6 | 75 |
| MIMAT0030243 | bdi-miR7751-3p | 2 | ......__ | 7 | 75 |
| MIMAT0029373 | lja-miR7546 | 1 | ......__ | 6 | 75 |
| MIMAT0026055 | mdm-miR7124b | 6 | ......__ | 1 | 75 |
| MIMAT0026054 | mdm-miR7124a | 6 | ......__ | 1 | 75 |
| MIMAT0027768 | mmu-miR-6934-5p | 1 | ......__ | 6 | 75 |
| MIMAT0027767 | mmu-miR-6933-3p | 2 | __...... | 7 | 75 |
| MIMAT0025701 | gga-miR-6607-5p | 3 | ......__ | 8 | 75 |
| MIMAT0025070 | rno-miR-6331 | 3 | ......__ | 8 | 75 |
| MIMAT0027330 | ppe-miR6294 | 1 | _......_ | 6 | 75 |
| MIMAT0024786 | hbr-miR6168 | 3 | ......__ | 8 | 75 |
| MIMAT0024686 | nta-miR171a | 3 | ......__ | 8 | 75 |
| MIMAT0024301 | ggo-miR-609 | 3 | __...... | 8 | 75 |
| MIMAT0022467 | gma-miR5679 | 1 | ......__ | 6 | 75 |
| MIMAT0022443 | ath-miR5665 | 1 | ......__ | 6 | 75 |
| MIMAT0022165 | osa-miR5530 | 3 | _......_ | 8 | 75 |
| MIMAT0022122 | osa-miR5489 | 3 | __...... | 8 | 75 |
| MIMAT0021570 | asu-miR-5355-5p | 8 | __...... | 3 | 75 |
| MIMAT0021212 | mtr-miR5228 | 3 | _......_ | 8 | 75 |
| MIMAT0020555 | osa-miR5073 | 3 | ......__ | 8 | 75 |
| MIMAT0021005 | gma-miR1507c-5p | 3 | __...... | 8 | 75 |
| MIMAT0020189 | dme-miR-4965-3p | 8 | _......_ | 3 | 75 |
| MIMAT0020161 | dme-miR-4949-3p | 3 | _......_ | 8 | 75 |
| MIMAT0019786 | hsa-miR-4694-5p | 2 | __...... | 7 | 75 |
| MIMAT0019593 | pma-miR-4561 | 2 | ......__ | 7 | 75 |
| MIMAT0018748 | tca-miR-9d-5p | 3 | ......__ | 8 | 75 |
| MIMAT0018730 | tca-miR-279c-5p | 3 | __...... | 8 | 75 |
| MIMAT0018010 | vvi-miR2950-3p | 1 | _......_ | 6 | 75 |
| MIMAT0016641 | cin-miR-4076-3p | 1 | __...... | 6 | 75 |
| MIMAT0016614 | cin-miR-4063-5p | 6 | __...... | 1 | 75 |
| MIMAT0017862 | rno-miR-3576 | 8 | _......_ | 3 | 75 |
| MIMAT0017854 | rno-miR-1188-5p | 1 | _......_ | 6 | 75 |
| MIMAT0017623 | aly-miR839-5p | 6 | ......__ | 1 | 75 |
| MIMAT0014672 | hma-miR-3005 | 1 | ......__ | 6 | 75 |
| MIMAT0014434 | cqu-miR-2941-1-5p | 3 | _......_ | 8 | 75 |
| MIMAT0014348 | ghr-miR2950 | 1 | _......_ | 6 | 75 |
| MIMAT0015332 | zma-miR171n-5p | 3 | ......__ | 8 | 75 |
| MIMAT0011555 | crm-miR-79-5p | 3 | ......__ | 8 | 75 |
| MIMAT0008272 | ptr-miR-609 | 3 | __...... | 8 | 75 |
| MIMAT0007924 | sly-miR171c | 3 | ......__ | 8 | 75 |
| MIMAT0007910 | sly-miR1918 | 3 | ......__ | 8 | 75 |
| MIMAT0006462 | mml-miR-609 | 3 | __...... | 8 | 75 |
| MIMAT0007665 | gga-miR-1758 | 7 | ......__ | 2 | 75 |
| MIMAT0006140 | mdo-miR-1541 | 1 | _......_ | 6 | 75 |
| MIMAT0015263 | cin-miR-200-5p | 7 | ......__ | 2 | 75 |
| MIMAT0007346 | gga-miR-1467-3p | 8 | _......_ | 3 | 75 |
| MIMAT0005977 | osa-miR810b.1 | 8 | __...... | 3 | 75 |
| MIMAT0005843 | mmu-miR-1188-5p | 1 | _......_ | 6 | 75 |
| MIMAT0005274 | smo-miR1115-3p | 7 | ......__ | 2 | 75 |
| MIMAT0020873 | dme-miR-976-5p | 2 | ......__ | 7 | 75 |
| MIMAT0004321 | ath-miR869.2 | 3 | _......_ | 8 | 75 |
| MIMAT0003277 | hsa-miR-609 | 3 | __...... | 8 | 75 |
| MIMAT0015198 | zma-miR171c-5p | 3 | ......__ | 8 | 75 |
| MIMAT0020322 | cel-miR-79-5p | 3 | ......__ | 8 | 75 |
