| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ttggtta | 7 | ||
| MIMAT0030377 | ptc-miR7817a | 2 | ....... | 8 | 100 |
| MIMAT0029539 | ipu-miR-199b | 7 | ....... | 1 | 100 |
| MIMAT0024958 | hme-miR-2768 | 2 | ....... | 8 | 100 |
| MIMAT0024460 | mse-miR-2768 | 2 | ....... | 8 | 100 |
| MIMAT0021472 | asu-miR-79-5p | 2 | ....... | 8 | 100 |
| MIMAT0016939 | bta-miR-3604 | 7 | ....... | 1 | 100 |
| MIMAT0014702 | hsv2-miR-H20 | 2 | ....... | 8 | 100 |
| MIMAT0013647 | bmo-miR-2768-3p | 2 | ....... | 8 | 100 |
| MIMAT0013402 | mtr-miR2636 | 2 | ....... | 8 | 100 |
| MIMAT0012128 | sme-miR-277d-5p | 2 | ....... | 8 | 100 |
| MIMAT0003933 | ath-miR774a | 1 | ....... | 7 | 100 |
| MIMAT0035092 | efu-miR-9337 | 3 | ......_ | 8 | 85 |
| MIMAT0035042 | efu-miR-487 | 2 | _...... | 7 | 85 |
| MIMAT0034801 | efu-miR-9210 | 1 | _...... | 6 | 85 |
| MIMAT0033963 | esi-miR8622c | 1 | ......_ | 6 | 85 |
| MIMAT0033962 | esi-miR8625 | 6 | ......_ | 1 | 85 |
| MIMAT0033667 | sma-miR-8473-5p | 6 | ......_ | 1 | 85 |
| MIMAT0033622 | sma-miR-8455-5p | 3 | ......_ | 8 | 85 |
| MIMAT0033118 | ppc-miR-8300-3p | 1 | _...... | 6 | 85 |
| MIMAT0032834 | cel-miR-8208-3p | 1 | ......_ | 6 | 85 |
| MIMAT0032663 | ssa-miR-551-5p | 8 | ......_ | 3 | 85 |
| MIMAT0031566 | ppe-miR6288c-3p | 6 | ......_ | 1 | 85 |
| MIMAT0030743 | prd-miR-7941-3p | 8 | _...... | 3 | 85 |
| MIMAT0030306 | bdi-miR7777-5p.1 | 3 | ......_ | 8 | 85 |
| MIMAT0029949 | bta-miR-133c | 3 | ......_ | 8 | 85 |
| MIMAT0029653 | cbn-miR-7597 | 6 | _...... | 1 | 85 |
| MIMAT0029612 | crm-miR-7597 | 6 | _...... | 1 | 85 |
| MIMAT0029582 | cbr-miR-7581 | 6 | _...... | 1 | 85 |
| MIMAT0028883 | mdo-miR-7392-3p | 7 | _...... | 2 | 85 |
| MIMAT0028203 | dre-miR-7146-5p | 7 | _...... | 2 | 85 |
| MIMAT0028035 | mmu-miR-7065-3p | 1 | ......_ | 6 | 85 |
| MIMAT0025644 | gga-miR-6568-3p | 8 | ......_ | 3 | 85 |
| MIMAT0023392 | hco-miR-5919 | 3 | ......_ | 8 | 85 |
| MIMAT0023080 | tur-miR-133-5p | 3 | ......_ | 8 | 85 |
| MIMAT0022326 | cin-miR-5601-3p | 3 | _...... | 8 | 85 |
| MIMAT0022319 | cin-miR-5598-5p | 2 | _...... | 7 | 85 |
| MIMAT0021407 | rmi-miR-5334 | 3 | ......_ | 8 | 85 |
| MIMAT0020506 | dme-miR-4913-3p | 8 | _...... | 3 | 85 |
| MIMAT0019447 | pma-miR-125-3p | 3 | _...... | 8 | 85 |
| MIMAT0019294 | oar-miR-487b-5p | 3 | _...... | 8 | 85 |
| MIMAT0018847 | tca-miR-3877-3p | 6 | ......_ | 1 | 85 |
| MIMAT0017973 | ssc-miR-487b | 2 | _...... | 7 | 85 |
| MIMAT0016532 | cin-miR-4020a-5p | 3 | _...... | 8 | 85 |
| MIMAT0017838 | rno-miR-218b | 3 | _...... | 8 | 85 |
| MIMAT0014838 | mmu-miR-3066-5p | 1 | ......_ | 6 | 85 |
| MIMAT0014100 | bma-miR-9-5p | 3 | ......_ | 8 | 85 |
| MIMAT0013815 | osa-miR2868 | 1 | ......_ | 6 | 85 |
| MIMAT0032062 | dvi-miR-133-5p | 3 | ......_ | 8 | 85 |
| MIMAT0026881 | mml-miR-487b-5p | 2 | _...... | 7 | 85 |
| MIMAT0006819 | oan-miR-1332-3p | 3 | ......_ | 8 | 85 |
| MIMAT0005360 | tae-miR1125 | 6 | ......_ | 1 | 85 |
| MIMAT0022716 | xtr-miR-449a-3p | 1 | _...... | 6 | 85 |
| MIMAT0017221 | rno-miR-487b-5p | 3 | _...... | 8 | 85 |
| MIMAT0017216 | mmu-miR-487b-5p | 1 | _...... | 6 | 85 |
| MIMAT0026614 | hsa-miR-487b-5p | 2 | _...... | 7 | 85 |
| MIMAT0026559 | hsa-miR-487a-5p | 2 | _...... | 7 | 85 |
