| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ttgtcgtg | 8 | ||
| MIMAT0018958 | hsa-miR-4440 | 1 | _....... | 7 | 87 |
| MIMAT0016634 | cin-miR-4073-5p | 7 | ......._ | 1 | 87 |
| MIMAT0012612 | bmo-miR-2734 | 2 | ......._ | 8 | 87 |
| MIMAT0035790 | tae-miR9672a-3p | 7 | __...... | 2 | 75 |
| MIMAT0034880 | efu-miR-9260 | 1 | __...... | 6 | 75 |
| MIMAT0034822 | efu-miR-9223d | 8 | _......_ | 3 | 75 |
| MIMAT0034236 | gra-miR8784 | 2 | ......__ | 7 | 75 |
| MIMAT0034058 | gra-miR8685 | 8 | _......_ | 3 | 75 |
| MIMAT0033288 | ppc-miR-8361-5p | 7 | ......__ | 2 | 75 |
| MIMAT0032537 | ssa-miR-21b-3p | 6 | ......__ | 1 | 75 |
| MIMAT0032535 | ssa-miR-21a-2-3p | 6 | ......__ | 1 | 75 |
| MIMAT0032534 | ssa-miR-21a-3p | 6 | ......__ | 1 | 75 |
| MIMAT0031719 | bbe-miR-92a-5p | 3 | __...... | 8 | 75 |
| MIMAT0031548 | ppe-miR5225-5p | 3 | _......_ | 8 | 75 |
| MIMAT0026052 | mdm-miR5225c | 3 | _......_ | 8 | 75 |
| MIMAT0025425 | pol-miR-21-3p | 6 | ......__ | 1 | 75 |
| MIMAT0024537 | cca-miR6104 | 8 | _......_ | 3 | 75 |
| MIMAT0024289 | ggo-miR-1273c | 8 | ......__ | 3 | 75 |
| MIMAT0023169 | gma-miR5225 | 3 | _......_ | 8 | 75 |
| MIMAT0022169 | osa-miR5534a | 8 | _......_ | 3 | 75 |
| MIMAT0022027 | aca-miR-5410-5p | 3 | ......__ | 8 | 75 |
| MIMAT0019523 | pma-miR-212-5p | 2 | __...... | 7 | 75 |
| MIMAT0018367 | far-miR1134 | 6 | ......__ | 1 | 75 |
| MIMAT0018249 | gma-miR4357 | 3 | __...... | 8 | 75 |
| MIMAT0018786 | tca-miR-92c-5p | 3 | __...... | 8 | 75 |
| MIMAT0018693 | tca-miR-3831-3p | 7 | _......_ | 2 | 75 |
| MIMAT0018127 | pab-miR3695 | 1 | ......__ | 6 | 75 |
| MIMAT0018075 | hsa-miR-3655 | 3 | ......__ | 8 | 75 |
| MIMAT0018017 | vvi-miR3627-5p | 1 | ......__ | 6 | 75 |
| MIMAT0016423 | cin-miR-92d-5p | 2 | __...... | 7 | 75 |
| MIMAT0015594 | bmo-miR-3391-5p | 3 | __...... | 8 | 75 |
| MIMAT0015017 | hsa-miR-1273c | 8 | ......__ | 3 | 75 |
| MIMAT0014321 | aae-miR-92b-5p | 3 | __...... | 8 | 75 |
| MIMAT0014058 | osa-miR2927 | 1 | _......_ | 6 | 75 |
| MIMAT0032085 | dvi-miR-92b-5p | 3 | __...... | 8 | 75 |
| MIMAT0019112 | tca-miR-92b-5p | 3 | __...... | 8 | 75 |
| MIMAT0015273 | bmo-miR-2b-5p | 7 | ......__ | 2 | 75 |
| MIMAT0005553 | mcmv-miR-M95-1-5p | 2 | __...... | 7 | 75 |
| MIMAT0005371 | tae-miR1136 | 1 | ......__ | 6 | 75 |
| MIMAT0017196 | rno-miR-489-5p | 1 | _......_ | 6 | 75 |
| MIMAT0017013 | mmu-miR-196a-1-3p | 8 | _......_ | 3 | 75 |
| MIMAT0020835 | dme-miR-309-5p | 6 | ......__ | 1 | 75 |
