| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ttgttgc | 7 | ||
| MIMAT0033606 | sma-miR-8448-5p | 7 | ....... | 1 | 100 |
| MIMAT0031623 | bbe-miR-2062-5p | 8 | ....... | 2 | 100 |
| MIMAT0029131 | ghr-miR7489 | 2 | ....... | 8 | 100 |
| MIMAT0028172 | dev-miR-D3-3p | 2 | ....... | 8 | 100 |
| MIMAT0023301 | osa-miR5827 | 2 | ....... | 8 | 100 |
| MIMAT0018050 | vvi-miR3638-3p | 7 | ....... | 1 | 100 |
| MIMAT0009988 | bfl-miR-2062-5p | 8 | ....... | 2 | 100 |
| MIMAT0026839 | mml-miR-196a-3p | 8 | ....... | 2 | 100 |
| MIMAT0036947 | oha-miR-7-2-3p | 6 | ......_ | 1 | 85 |
| MIMAT0036946 | oha-miR-7-1-3p | 6 | ......_ | 1 | 85 |
| MIMAT0036324 | ocu-miR-367-5p | 3 | _...... | 8 | 85 |
| MIMAT0035691 | bra-miR9566-5p | 1 | ......_ | 6 | 85 |
| MIMAT0034953 | efu-miR-9293 | 6 | _...... | 1 | 85 |
| MIMAT0034809 | efu-miR-9217 | 3 | _...... | 8 | 85 |
| MIMAT0034767 | efu-miR-9187 | 1 | _...... | 6 | 85 |
| MIMAT0034624 | eca-miR-9079 | 1 | _...... | 6 | 85 |
| MIMAT0034546 | eca-miR-9006 | 3 | ......_ | 8 | 85 |
| MIMAT0033599 | sma-miR-7-3p | 6 | ......_ | 1 | 85 |
| MIMAT0032700 | ssa-miR-7a-7-3p | 6 | ......_ | 1 | 85 |
| MIMAT0032699 | ssa-miR-7a-6-3p | 6 | ......_ | 1 | 85 |
| MIMAT0032698 | ssa-miR-7a-5-3p | 6 | ......_ | 1 | 85 |
| MIMAT0032697 | ssa-miR-7a-4-3p | 6 | ......_ | 1 | 85 |
| MIMAT0032696 | ssa-miR-7a-3-3p | 6 | ......_ | 1 | 85 |
| MIMAT0032695 | ssa-miR-7a-2-3p | 6 | ......_ | 1 | 85 |
| MIMAT0032694 | ssa-miR-7a-1-3p | 6 | ......_ | 1 | 85 |
| MIMAT0032456 | ssa-miR-196a-3-3p | 8 | _...... | 3 | 85 |
| MIMAT0031640 | bbe-miR-2072-5p | 7 | _...... | 2 | 85 |
| MIMAT0031631 | bbe-miR-2067-5p | 3 | _...... | 8 | 85 |
| MIMAT0031294 | stu-miR172e-5p | 6 | _...... | 1 | 85 |
| MIMAT0030963 | stu-miR6149-5p | 8 | _...... | 3 | 85 |
| MIMAT0030570 | prd-miR-7893-5p | 2 | _...... | 7 | 85 |
| MIMAT0030231 | bdi-miR7745-3p | 1 | ......_ | 6 | 85 |
| MIMAT0032237 | lva-miR-4854-3p | 1 | _...... | 6 | 85 |
| MIMAT0031143 | aja-miR-7 | 6 | ......_ | 1 | 85 |
| MIMAT0028872 | mdo-miR-7388b-5p | 1 | _...... | 6 | 85 |
| MIMAT0028675 | mdo-miR-7333-3p | 3 | _...... | 8 | 85 |
| MIMAT0028539 | mdo-miR-7282-3p | 2 | _...... | 7 | 85 |
| MIMAT0028228 | hsa-miR-7159-5p | 8 | ......_ | 3 | 85 |
| MIMAT0025627 | gga-miR-6560-5p | 3 | _...... | 8 | 85 |
| MIMAT0025612 | gga-miR-6552-3p | 6 | ......_ | 1 | 85 |
| MIMAT0024003 | cgr-miR-744-3p | 2 | _...... | 7 | 85 |
| MIMAT0023459 | hco-miR-5956 | 1 | _...... | 6 | 85 |
| MIMAT0022793 | sha-miR-7 | 6 | ......_ | 1 | 85 |
| MIMAT0022076 | aca-miR-5452-3p | 6 | ......_ | 1 | 85 |
| MIMAT0021985 | aca-miR-7-2-3p | 6 | ......_ | 1 | 85 |
| MIMAT0021984 | aca-miR-7-1-3p | 6 | ......_ | 1 | 85 |
| MIMAT0021866 | aca-miR-21-3p | 6 | ......_ | 1 | 85 |
| MIMAT0021219 | mtr-miR5234 | 3 | ......_ | 8 | 85 |
| MIMAT0027075 | bdi-miR827-5p | 3 | ......_ | 8 | 85 |
| MIMAT0020594 | ssc-miR-545-3p | 8 | ......_ | 3 | 85 |
| MIMAT0020225 | dme-miR-4987-5p | 8 | _...... | 3 | 85 |
| MIMAT0020202 | dme-miR-4973-3p | 7 | _...... | 2 | 85 |
| MIMAT0032118 | dme-miR-4968-3p | 8 | _...... | 3 | 85 |
| MIMAT0020077 | spu-miR-4854 | 1 | _...... | 6 | 85 |
| MIMAT0022741 | hsa-miR-3529-3p | 8 | ......_ | 3 | 85 |
| MIMAT0019770 | hsa-miR-4684-3p | 1 | _...... | 6 | 85 |
| MIMAT0019371 | pma-miR-7a-3p | 6 | ......_ | 1 | 85 |
| MIMAT0020954 | gma-miR4412-5p | 1 | _...... | 6 | 85 |
| MIMAT0018732 | tca-miR-3843-5p | 3 | ......_ | 8 | 85 |
| MIMAT0018723 | tca-miR-3839-3p | 3 | ......_ | 8 | 85 |
| MIMAT0017933 | aly-miR4244 | 1 | ......_ | 6 | 85 |
| MIMAT0016673 | cin-miR-4093-3p | 8 | _...... | 3 | 85 |
| MIMAT0016451 | cin-miR-4001c-3p | 3 | _...... | 8 | 85 |
| MIMAT0017704 | aly-miR3436-3p | 6 | ......_ | 1 | 85 |
| MIMAT0017527 | aly-miR172d-5p | 6 | _...... | 1 | 85 |
| MIMAT0031020 | tgu-miR-7-4-3p | 6 | ......_ | 1 | 85 |
| MIMAT0014632 | tgu-miR-7-1-3p | 6 | ......_ | 1 | 85 |
| MIMAT0020912 | dme-miR-2491-3p | 6 | ......_ | 1 | 85 |
| MIMAT0012006 | bta-miR-2434 | 1 | ......_ | 6 | 85 |
| MIMAT0010000 | bfl-miR-2072-5p | 7 | _...... | 2 | 85 |
| MIMAT0009859 | cfa-miR-367 | 3 | _...... | 8 | 85 |
| MIMAT0009772 | nve-miR-2027-5p | 3 | ......_ | 8 | 85 |
| MIMAT0006726 | cfa-miR-409 | 3 | _...... | 8 | 85 |
| MIMAT0007368 | gma-miR1510a-3p | 1 | ......_ | 6 | 85 |
| MIMAT0015251 | cin-miR-7-3p | 6 | ......_ | 1 | 85 |
| MIMAT0009195 | oan-miR-7-1-3p | 6 | ......_ | 1 | 85 |
| MIMAT0006987 | oan-miR-7-3p | 6 | ......_ | 1 | 85 |
| MIMAT0005369 | tae-miR1134 | 6 | ......_ | 1 | 85 |
| MIMAT0005087 | ppt-miR902l-5p | 3 | _...... | 8 | 85 |
| MIMAT0005085 | ppt-miR902k-5p | 3 | _...... | 8 | 85 |
| MIMAT0004946 | hsa-miR-744-3p | 2 | _...... | 7 | 85 |
| MIMAT0003807 | bta-miR-545-3p | 8 | ......_ | 3 | 85 |
| MIMAT0026643 | gga-miR-21-3p | 6 | ......_ | 1 | 85 |
| MIMAT0004820 | mmu-miR-744-3p | 2 | _...... | 7 | 85 |
| MIMAT0003205 | rno-miR-409a-3p | 3 | _...... | 8 | 85 |
| MIMAT0017214 | mmu-miR-367-5p | 3 | _...... | 8 | 85 |
| MIMAT0031901 | ath-miR172d-5p | 6 | _...... | 1 | 85 |
| MIMAT0017091 | rno-miR-7a-2-3p | 6 | ......_ | 1 | 85 |
| MIMAT0004686 | hsa-miR-367-5p | 3 | _...... | 8 | 85 |
| MIMAT0017071 | mmu-miR-7b-3p | 6 | ......_ | 1 | 85 |
| MIMAT0017070 | mmu-miR-7a-2-3p | 6 | ......_ | 1 | 85 |
| MIMAT0004670 | mmu-miR-7a-1-3p | 6 | ......_ | 1 | 85 |
| MIMAT0004562 | hsa-miR-196a-3p | 8 | _...... | 3 | 85 |
| MIMAT0004554 | hsa-miR-7-2-3p | 6 | ......_ | 1 | 85 |
| MIMAT0004553 | hsa-miR-7-1-3p | 6 | ......_ | 1 | 85 |
