| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tttaaccg | 8 | ||
| MIMAT0034216 | gra-miR7484i | 1 | ........ | 8 | 100 |
| MIMAT0034215 | gra-miR7484h | 1 | ........ | 8 | 100 |
| MIMAT0030743 | prd-miR-7941-3p | 1 | ......._ | 7 | 87 |
| MIMAT0026615 | hsa-miR-552-5p | 2 | ......._ | 8 | 87 |
| MIMAT0005590 | mml-miR-1235 | 1 | .c...... | 8 | 87 |
| MIMAT0036955 | oha-miR-9-2-5p | 8 | __...... | 3 | 75 |
| MIMAT0036652 | oha-miR-101b-5p | 7 | __...... | 2 | 75 |
| MIMAT0036389 | gma-miR4348c | 7 | ......__ | 2 | 75 |
| MIMAT0036322 | ocu-miR-302d-5p | 3 | ......__ | 8 | 75 |
| MIMAT0036318 | ocu-miR-302c-5p | 1 | ......__ | 6 | 75 |
| MIMAT0036316 | ocu-miR-302b-5p | 3 | ......__ | 8 | 75 |
| MIMAT0035248 | gsa-miR-184a-5p | 3 | ......__ | 8 | 75 |
| MIMAT0035119 | efu-miR-582 | 1 | __...... | 6 | 75 |
| MIMAT0034242 | gra-miR8762e | 3 | ......__ | 8 | 75 |
| MIMAT0034140 | gra-miR7484o | 3 | ......__ | 8 | 75 |
| MIMAT0034136 | gra-miR7502d | 3 | ......__ | 8 | 75 |
| MIMAT0034014 | gra-miR7502c | 8 | ......__ | 3 | 75 |
| MIMAT0034013 | gra-miR7502b | 8 | ......__ | 3 | 75 |
| MIMAT0033472 | str-miR-87b-5p | 7 | ......__ | 2 | 75 |
| MIMAT0033400 | str-miR-8377-5p | 1 | ......__ | 6 | 75 |
| MIMAT0033334 | str-miR-8367-3p | 1 | __...... | 6 | 75 |
| MIMAT0033222 | ppc-miR-8338-2-3p | 8 | __...... | 3 | 75 |
| MIMAT0033166 | ppc-miR-8338-3p | 7 | __...... | 2 | 75 |
| MIMAT0032877 | ppc-miR-8221-3p | 1 | __...... | 6 | 75 |
| MIMAT0030203 | bdi-miR7734-3p | 1 | _......_ | 6 | 75 |
| MIMAT0029149 | ghr-miR7502 | 3 | ......__ | 8 | 75 |
| MIMAT0025380 | ssc-miR-582 | 1 | __...... | 6 | 75 |
| MIMAT0023728 | cgr-miR-101b-5p | 6 | __...... | 1 | 75 |
| MIMAT0023137 | mtr-miR5755 | 2 | ......__ | 7 | 75 |
| MIMAT0021712 | aca-miR-101-2-5p | 7 | __...... | 2 | 75 |
| MIMAT0021578 | asu-miR-5358a-5p | 6 | __...... | 1 | 75 |
| MIMAT0021091 | osa-miR5146 | 1 | ......__ | 6 | 75 |
| MIMAT0020506 | dme-miR-4913-3p | 2 | _......_ | 7 | 75 |
| MIMAT0016477 | cin-miR-4006d-3p | 3 | ......__ | 8 | 75 |
| MIMAT0017835 | rno-miR-9b-5p | 8 | __...... | 3 | 75 |
| MIMAT0031101 | tgu-miR-101-1-5p | 7 | __...... | 2 | 75 |
| MIMAT0013104 | eca-miR-582-3p | 1 | __...... | 6 | 75 |
| MIMAT0011869 | bta-miR-2336 | 2 | __...... | 7 | 75 |
| MIMAT0011231 | sme-miR-2150 | 6 | __...... | 1 | 75 |
| MIMAT0010067 | osa-miR2101-3p | 2 | ......__ | 7 | 75 |
| MIMAT0009858 | cfa-miR-302d | 3 | ......__ | 8 | 75 |
| MIMAT0009857 | cfa-miR-302c | 1 | ......__ | 6 | 75 |
| MIMAT0009856 | cfa-miR-302b | 3 | ......__ | 8 | 75 |
| MIMAT0032064 | dvi-miR-13b-5p | 8 | ......__ | 3 | 75 |
| MIMAT0031100 | mml-miR-101-2-5p | 7 | __...... | 2 | 75 |
| MIMAT0007386 | gma-miR1525 | 8 | _......_ | 3 | 75 |
| MIMAT0007194 | oan-miR-302-5p | 1 | ......__ | 6 | 75 |
| MIMAT0020859 | dme-miR-964-3p | 7 | ......__ | 2 | 75 |
| MIMAT0026657 | mdo-miR-101-2-5p | 7 | __...... | 2 | 75 |
| MIMAT0022716 | xtr-miR-449a-3p | 7 | _......_ | 2 | 75 |
| MIMAT0017225 | mmu-miR-302d-5p | 3 | ......__ | 8 | 75 |
| MIMAT0003375 | mmu-miR-302c-5p | 3 | ......__ | 8 | 75 |
| MIMAT0003373 | mmu-miR-302b-5p | 3 | ......__ | 8 | 75 |
| MIMAT0003358 | gga-miR-302c-5p | 1 | ......__ | 6 | 75 |
| MIMAT0003356 | gga-miR-302b-5p | 3 | ......__ | 8 | 75 |
| MIMAT0003401 | dre-miR-27c-5p | 2 | _......_ | 7 | 75 |
| MIMAT0026545 | gga-miR-101-1-5p | 7 | __...... | 2 | 75 |
| MIMAT0004685 | hsa-miR-302d-5p | 3 | ......__ | 8 | 75 |
| MIMAT0000716 | hsa-miR-302c-5p | 1 | ......__ | 6 | 75 |
| MIMAT0000714 | hsa-miR-302b-5p | 3 | ......__ | 8 | 75 |
| MIMAT0017046 | mmu-miR-101b-5p | 7 | __...... | 2 | 75 |
| MIMAT0017045 | rno-miR-101b-5p | 7 | __...... | 2 | 75 |
| MIMAT0020796 | dme-miR-13b-1-5p | 8 | ......__ | 3 | 75 |
