| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tttagag | 7 | ||
| MIMAT0037050 | ssc-miR-9832-3p | 2 | ....... | 8 | 100 |
| MIMAT0035331 | gsa-miR-9393-3p | 8 | ....... | 2 | 100 |
| MIMAT0030897 | stu-miR8005c | 1 | ....... | 7 | 100 |
| MIMAT0030896 | stu-miR8005b-3p | 1 | ....... | 7 | 100 |
| MIMAT0031191 | stu-miR8005b-5p | 8 | ....... | 2 | 100 |
| MIMAT0030895 | stu-miR8005a | 1 | ....... | 7 | 100 |
| MIMAT0029665 | cbn-miR-7623 | 8 | ....... | 2 | 100 |
| MIMAT0022687 | hvsa-miR-HSUR2-3p | 2 | ....... | 8 | 100 |
| MIMAT0016223 | ppy-miR-1303 | 1 | ....... | 7 | 100 |
| MIMAT0008022 | ptr-miR-1303 | 1 | ....... | 7 | 100 |
| MIMAT0005891 | hsa-miR-1303 | 1 | ....... | 7 | 100 |
| MIMAT0026609 | hsa-miR-520f-5p | 8 | ....... | 2 | 100 |
| MIMAT0035570 | dvi-miR-927-5p | 1 | ......_ | 6 | 85 |
| MIMAT0035382 | nve-miR-2041b-3p | 1 | _...... | 6 | 85 |
| MIMAT0035380 | nve-miR-2041b | 1 | _...... | 6 | 85 |
| MIMAT0033864 | atr-miR8580 | 8 | ......_ | 3 | 85 |
| MIMAT0033842 | atr-miR8566 | 2 | _...... | 7 | 85 |
| MIMAT0033663 | sma-miR-8472-5p | 1 | ......_ | 6 | 85 |
| MIMAT0033564 | sma-miR-8430-5p | 8 | ......_ | 3 | 85 |
| MIMAT0032687 | ssa-miR-737-3p | 8 | ......_ | 3 | 85 |
| MIMAT0029909 | mmu-miR-7689-3p | 1 | _...... | 6 | 85 |
| MIMAT0029880 | mmu-miR-465d-5p | 3 | ......_ | 8 | 85 |
| MIMAT0029115 | gga-miR-7480-3p | 8 | _...... | 3 | 85 |
| MIMAT0028987 | oan-miR-7419-3p | 3 | ......_ | 8 | 85 |
| MIMAT0028533 | mdo-miR-7279-3p | 7 | _...... | 2 | 85 |
| MIMAT0027849 | mmu-miR-6973a-3p | 8 | _...... | 3 | 85 |
| MIMAT0027632 | hsa-miR-6866-5p | 1 | _...... | 6 | 85 |
| MIMAT0025671 | gga-miR-6582-5p | 1 | _...... | 6 | 85 |
| MIMAT0024990 | hme-miR-927 | 1 | ......_ | 6 | 85 |
| MIMAT0027311 | ppe-miR6281 | 2 | _...... | 7 | 85 |
| MIMAT0027297 | ppe-miR6267b | 2 | _...... | 7 | 85 |
| MIMAT0027278 | ppe-miR6262 | 3 | ......_ | 8 | 85 |
| MIMAT0023579 | tca-miR-927b-5p | 1 | ......_ | 6 | 85 |
| MIMAT0023576 | tca-miR-6017-3p | 8 | _...... | 3 | 85 |
| MIMAT0022420 | ath-miR781b | 1 | _...... | 6 | 85 |
| MIMAT0022046 | aca-miR-5426-5p | 8 | _...... | 3 | 85 |
| MIMAT0022020 | aca-miR-5406-5p | 3 | ......_ | 8 | 85 |
| MIMAT0021401 | rmi-miR-5328 | 1 | _...... | 6 | 85 |
| MIMAT0021078 | tre-miR-5045 | 8 | ......_ | 3 | 85 |
| MIMAT0021077 | gpy-miR-5045 | 8 | ......_ | 3 | 85 |
| MIMAT0032121 | gma-miR5035-3p | 3 | ......_ | 8 | 85 |
| MIMAT0021058 | gma-miR5035-5p | 8 | ......_ | 3 | 85 |
| MIMAT0019906 | hsa-miR-4760-5p | 1 | ......_ | 6 | 85 |
| MIMAT0019875 | hsa-miR-4744 | 6 | ......_ | 1 | 85 |
| MIMAT0018056 | dme-miR-3641-3p | 6 | ......_ | 1 | 85 |
| MIMAT0017597 | aly-miR781-5p | 1 | _...... | 6 | 85 |
| MIMAT0014947 | mmu-miR-3108-5p | 8 | _...... | 3 | 85 |
| MIMAT0014740 | api-miR-927 | 1 | ......_ | 6 | 85 |
| MIMAT0012850 | rno-miR-465-5p | 3 | ......_ | 8 | 85 |
| MIMAT0013470 | mtr-miR2663 | 1 | _...... | 6 | 85 |
| MIMAT0012483 | dsi-miR-927-5p | 1 | ......_ | 6 | 85 |
| MIMAT0012400 | dps-miR-2566b-5p | 1 | ......_ | 6 | 85 |
| MIMAT0016970 | dps-miR-2566a-2-5p | 1 | ......_ | 6 | 85 |
| MIMAT0012394 | dps-miR-2566a-1-5p | 1 | ......_ | 6 | 85 |
| MIMAT0012269 | dps-miR-927-5p | 1 | ......_ | 6 | 85 |
| MIMAT0010102 | aga-miR-927 | 1 | ......_ | 6 | 85 |
| MIMAT0009157 | bmo-miR-927-5p | 1 | ......_ | 6 | 85 |
| MIMAT0008391 | tca-miR-927a-5p | 1 | ......_ | 6 | 85 |
| MIMAT0006492 | mml-miR-651 | 1 | ......_ | 6 | 85 |
| MIMAT0005501 | dme-miR-927-5p | 1 | ......_ | 6 | 85 |
| MIMAT0004873 | mmu-miR-465c-5p | 3 | ......_ | 8 | 85 |
| MIMAT0004871 | mmu-miR-465b-5p | 3 | ......_ | 8 | 85 |
| MIMAT0003940 | ath-miR781a | 1 | _...... | 6 | 85 |
| MIMAT0003907 | ppt-miR1218 | 3 | _...... | 8 | 85 |
| MIMAT0002106 | mmu-miR-465a-5p | 3 | ......_ | 8 | 85 |
