| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tttagtg | 7 | ||
| MIMAT0034239 | gra-miR8786b | 2 | ....... | 8 | 100 |
| MIMAT0034238 | gra-miR8786a | 2 | ....... | 8 | 100 |
| MIMAT0028635 | mdo-miR-7317-3p | 2 | ....... | 8 | 100 |
| MIMAT0019876 | hsa-miR-3591-5p | 1 | ....... | 7 | 100 |
| MIMAT0016819 | cin-miR-4200-5p | 7 | ....... | 1 | 100 |
| MIMAT0017625 | aly-miR840-5p | 8 | ....... | 2 | 100 |
| MIMAT0003434 | rlcv-miR-rL1-6-5p | 2 | ....... | 8 | 100 |
| MIMAT0036776 | oha-miR-190b-3p | 6 | ......_ | 1 | 85 |
| MIMAT0036392 | gma-miR9758 | 3 | ......_ | 8 | 85 |
| MIMAT0036238 | chi-miR-451-3p | 1 | ......_ | 6 | 85 |
| MIMAT0034356 | cfa-miR-8861 | 1 | _...... | 6 | 85 |
| MIMAT0034257 | gra-miR8739 | 8 | ......_ | 3 | 85 |
| MIMAT0034199 | gra-miR8765 | 1 | _...... | 6 | 85 |
| MIMAT0033887 | atr-miR8598 | 1 | ......_ | 6 | 85 |
| MIMAT0033886 | atr-miR8597 | 1 | _...... | 6 | 85 |
| MIMAT0033580 | sma-miR-8438-5p | 6 | _...... | 1 | 85 |
| MIMAT0033521 | sma-miR-8408-3p | 1 | ......_ | 6 | 85 |
| MIMAT0032782 | ath-miR8183 | 1 | ......_ | 6 | 85 |
| MIMAT0032439 | ssa-miR-190b-3p | 6 | ......_ | 1 | 85 |
| MIMAT0025798 | gga-miR-6692-5p | 1 | ......_ | 6 | 85 |
| MIMAT0027265 | pgi-miR6141 | 8 | ......_ | 3 | 85 |
| MIMAT0023280 | osa-miR5808 | 6 | ......_ | 1 | 85 |
| MIMAT0022464 | gma-miR4387e | 3 | _...... | 8 | 85 |
| MIMAT0022063 | aca-miR-5441 | 1 | ......_ | 6 | 85 |
| MIMAT0021940 | aca-miR-34a-3p | 8 | _...... | 3 | 85 |
| MIMAT0021263 | mtr-miR5263 | 8 | ......_ | 3 | 85 |
| MIMAT0021244 | mtr-miR5248 | 3 | ......_ | 8 | 85 |
| MIMAT0019753 | hsa-miR-4671-3p | 1 | _...... | 6 | 85 |
| MIMAT0019046 | hsa-miR-4509 | 6 | ......_ | 1 | 85 |
| MIMAT0017983 | hsa-miR-3606-5p | 1 | _...... | 6 | 85 |
| MIMAT0014797 | api-miR-3054 | 1 | _...... | 6 | 85 |
| MIMAT0007407 | gga-miR-1552-5p | 1 | _...... | 6 | 85 |
| MIMAT0004271 | ath-miR849 | 8 | ......_ | 3 | 85 |
| MIMAT0026654 | mdo-miR-32-3p | 3 | ......_ | 8 | 85 |
| MIMAT0026578 | mml-miR-32-3p | 3 | ......_ | 8 | 85 |
| MIMAT0026508 | gga-miR-32-3p | 3 | ......_ | 8 | 85 |
| MIMAT0000999 | ebv-miR-BART1-5p | 3 | _...... | 8 | 85 |
