| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tttccgg | 7 | ||
| MIMAT0028265 | mml-miR-1180-3p | 1 | ....... | 7 | 100 |
| MIMAT0024214 | ggo-miR-1180 | 1 | ....... | 7 | 100 |
| MIMAT0016145 | ppy-miR-1180 | 1 | ....... | 7 | 100 |
| MIMAT0013020 | eca-miR-1180 | 1 | ....... | 7 | 100 |
| MIMAT0005825 | hsa-miR-1180-3p | 1 | ....... | 7 | 100 |
| MIMAT0036482 | tch-miR-9771c | 8 | ......_ | 3 | 85 |
| MIMAT0035531 | bdi-miR2118a | 1 | ......_ | 6 | 85 |
| MIMAT0035254 | gsa-miR-1175-5p | 8 | ......_ | 3 | 85 |
| MIMAT0035104 | efu-miR-9340 | 7 | _...... | 2 | 85 |
| MIMAT0034817 | efu-miR-9223f | 1 | _...... | 6 | 85 |
| MIMAT0033949 | atr-miR8558b | 1 | ......_ | 6 | 85 |
| MIMAT0033830 | atr-miR8558a | 1 | ......_ | 6 | 85 |
| MIMAT0030862 | stu-miR7988 | 8 | ......_ | 3 | 85 |
| MIMAT0030490 | prd-miR-7873a-5p | 3 | _...... | 8 | 85 |
| MIMAT0027924 | mmu-miR-7010-5p | 6 | ......_ | 1 | 85 |
| MIMAT0025278 | ptc-miR482c-3p | 3 | ......_ | 8 | 85 |
| MIMAT0027272 | ppe-miR482a-3p | 1 | ......_ | 6 | 85 |
| MIMAT0022379 | mmu-miR-5625-5p | 7 | _...... | 2 | 85 |
| MIMAT0019738 | hsa-miR-4664-3p | 2 | _...... | 7 | 85 |
| MIMAT0018316 | gma-miR4400 | 8 | ......_ | 3 | 85 |
| MIMAT0018256 | gma-miR4361 | 6 | _...... | 1 | 85 |
| MIMAT0018040 | vvi-miR3634-3p | 1 | ......_ | 6 | 85 |
| MIMAT0017749 | esi-miR3466-5p | 1 | _...... | 6 | 85 |
| MIMAT0012438 | dsi-miR-967-3p | 3 | ......_ | 8 | 85 |
| MIMAT0012332 | dps-miR-2522b-5p | 1 | _...... | 6 | 85 |
| MIMAT0011406 | sme-miR-2147d-5p | 6 | ......_ | 1 | 85 |
| MIMAT0011270 | sme-miR-2147c | 6 | ......_ | 1 | 85 |
| MIMAT0011265 | sme-miR-2147b | 6 | ......_ | 1 | 85 |
| MIMAT0007388 | gma-miR1526 | 6 | _...... | 1 | 85 |
| MIMAT0004413 | rrv-miR-rR1-6-5p | 8 | ......_ | 3 | 85 |
| MIMAT0004412 | rrv-miR-rR1-5 | 6 | _...... | 1 | 85 |
| MIMAT0004832 | ppt-miR1220b | 1 | _...... | 6 | 85 |
| MIMAT0004831 | ppt-miR1220a | 1 | _...... | 6 | 85 |
