| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tttcgcc | 7 | ||
| MIMAT0023101 | tur-miR-5736a-3p | 1 | ....... | 7 | 100 |
| MIMAT0018694 | tca-miR-3832-5p | 8 | ....... | 2 | 100 |
| MIMAT0026553 | hcmv-miR-US5-2-5p | 2 | ....... | 8 | 100 |
| MIMAT0035610 | dvi-miR-996-5p | 6 | _...... | 1 | 85 |
| MIMAT0035230 | dme-miR-9383-3p | 1 | _...... | 6 | 85 |
| MIMAT0033956 | esi-miR8621 | 3 | _...... | 8 | 85 |
| MIMAT0033759 | pxy-miR-8520-3p | 2 | _...... | 7 | 85 |
| MIMAT0031830 | cpa-miR8137 | 1 | _...... | 6 | 85 |
| MIMAT0027477 | hsa-miR-6788-3p | 1 | _...... | 6 | 85 |
| MIMAT0021566 | asu-miR-5353-5p | 7 | _...... | 2 | 85 |
| MIMAT0018603 | ame-miR-3734 | 1 | ......_ | 6 | 85 |
| MIMAT0017789 | esi-miR3468-5p | 8 | ......_ | 3 | 85 |
| MIMAT0017579 | aly-miR399e-5p | 7 | _...... | 2 | 85 |
| MIMAT0017577 | aly-miR399d-5p | 7 | _...... | 2 | 85 |
| MIMAT0015354 | zma-miR398a-5p | 8 | _...... | 3 | 85 |
| MIMAT0009818 | nve-miR-2047-5p | 1 | _...... | 6 | 85 |
| MIMAT0006771 | cel-miR-1829c-5p | 8 | ......_ | 3 | 85 |
| MIMAT0007489 | gga-miR-1621-3p | 3 | _...... | 8 | 85 |
| MIMAT0017209 | mmu-miR-541-3p | 7 | _...... | 2 | 85 |
| MIMAT0020820 | dme-miR-286-5p | 6 | _...... | 1 | 85 |
