| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tttctctc | 8 | ||
| MIMAT0027693 | mmu-miR-6896-3p | 1 | ........ | 8 | 100 |
| MIMAT0027567 | hsa-miR-6833-3p | 1 | ........ | 8 | 100 |
| MIMAT0037004 | ssc-miR-9787-3p | 7 | ......._ | 1 | 87 |
| MIMAT0034044 | gra-miR8672 | 8 | ......._ | 2 | 87 |
| MIMAT0034027 | gra-miR7504c | 8 | ......._ | 2 | 87 |
| MIMAT0033872 | atr-miR8586 | 2 | ......._ | 8 | 87 |
| MIMAT0033865 | atr-miR8581 | 8 | _....... | 2 | 87 |
| MIMAT0030251 | bdi-miR7754-3p | 1 | _....... | 7 | 87 |
| MIMAT0029122 | hcmv-miR-UL59 | 2 | _....... | 8 | 87 |
| MIMAT0027647 | hsa-miR-6873-3p | 1 | _....... | 7 | 87 |
| MIMAT0023111 | tur-miR-5738-3p | 2 | ......._ | 8 | 87 |
| MIMAT0022401 | ath-miR5640 | 8 | _....... | 2 | 87 |
| MIMAT0022334 | cin-miR-5604-3p | 1 | ......._ | 7 | 87 |
| MIMAT0021008 | gma-miR1513b | 8 | _....... | 2 | 87 |
| MIMAT0020155 | dme-miR-4945-5p | 2 | ......._ | 8 | 87 |
| MIMAT0019920 | hsa-miR-4768-5p | 2 | _....... | 8 | 87 |
| MIMAT0018512 | ame-miR-3717 | 8 | _....... | 2 | 87 |
| MIMAT0010064 | osa-miR2100-5p | 1 | _....... | 7 | 87 |
| MIMAT0007853 | ath-miR1886.1 | 8 | _....... | 2 | 87 |
| MIMAT0007371 | gma-miR1513a-5p | 8 | _....... | 2 | 87 |
| MIMAT0003496 | mmu-miR-706 | 7 | ......._ | 1 | 87 |
| MIMAT0015119 | cel-miR-247-5p | 8 | ......._ | 2 | 87 |
| MIMAT0035483 | sly-miR477-5p | 1 | .g...... | 8 | 87 |
| MIMAT0028118 | hsa-miR-7110-3p | 1 | .c...... | 8 | 87 |
| MIMAT0027691 | hsa-miR-6895-3p | 1 | .g...... | 8 | 87 |
| MIMAT0020508 | dme-miR-4915-5p | 8 | ......a. | 1 | 87 |
| MIMAT0020468 | bfl-miR-4882c | 8 | ......g. | 1 | 87 |
| MIMAT0019673 | osa-miR3979-5p | 1 | .c...... | 8 | 87 |
| MIMAT0006797 | oan-miR-1328 | 8 | .c...... | 1 | 87 |
| MIMAT0005122 | ppt-miR1029 | 1 | .c...... | 8 | 87 |
| MIMAT0036564 | tch-miR-185-5p | 8 | __...... | 3 | 75 |
| MIMAT0036481 | tch-miR-6529 | 6 | __...... | 1 | 75 |
| MIMAT0035678 | bra-miR9561-3p | 6 | __...... | 1 | 75 |
| MIMAT0035362 | xtr-miR-428b | 6 | ......__ | 1 | 75 |
| MIMAT0035073 | efu-miR-185 | 8 | __...... | 3 | 75 |
| MIMAT0034227 | gra-miR7504m | 1 | ......__ | 6 | 75 |
| MIMAT0034226 | gra-miR7504l | 1 | ......__ | 6 | 75 |
| MIMAT0034225 | gra-miR7504k | 1 | ......__ | 6 | 75 |
| MIMAT0034068 | gra-miR7504f | 8 | ......__ | 3 | 75 |
| MIMAT0034067 | gra-miR7504e | 8 | ......__ | 3 | 75 |
| MIMAT0034059 | gra-miR8686 | 6 | _......_ | 1 | 75 |
| MIMAT0033702 | pxy-miR-8494-5p | 2 | _......_ | 7 | 75 |
| MIMAT0033592 | sma-miR-281-5p | 6 | __...... | 1 | 75 |
| MIMAT0033280 | ppc-miR-8359-5p | 8 | __...... | 3 | 75 |
| MIMAT0033160 | ppc-miR-8364p-3p | 7 | __...... | 2 | 75 |
| MIMAT0033139 | ppc-miR-8364o-3p | 7 | __...... | 2 | 75 |
| MIMAT0033123 | ppc-miR-8364u-5p | 1 | __...... | 6 | 75 |
| MIMAT0031840 | cpa-miR8143 | 6 | __...... | 1 | 75 |
| MIMAT0031543 | ppe-miR6267c-3p | 8 | __...... | 3 | 75 |
| MIMAT0031389 | aly-miR173b-3p | 3 | _......_ | 8 | 75 |
| MIMAT0030383 | ptc-miR7824 | 8 | ......__ | 3 | 75 |
| MIMAT0029801 | mmu-miR-7649-3p | 1 | __...... | 6 | 75 |
| MIMAT0029365 | lja-miR7539 | 8 | __...... | 3 | 75 |
| MIMAT0029115 | gga-miR-7480-3p | 1 | _......_ | 6 | 75 |
| MIMAT0028961 | oan-miR-7407-3p | 2 | _......_ | 7 | 75 |
| MIMAT0028314 | mml-miR-6529-5p | 6 | __...... | 1 | 75 |
| MIMAT0028100 | ddi-miR-7097 | 1 | _......_ | 6 | 75 |
| MIMAT0027961 | mmu-miR-7028-3p | 3 | _......_ | 8 | 75 |
| MIMAT0027853 | mmu-miR-6975-3p | 1 | __...... | 6 | 75 |
| MIMAT0027535 | hsa-miR-6817-3p | 1 | __...... | 6 | 75 |
| MIMAT0027519 | hsa-miR-6809-3p | 2 | _......_ | 7 | 75 |
| MIMAT0025816 | gga-miR-6706-5p | 8 | ......__ | 3 | 75 |
| MIMAT0025727 | gga-miR-6631-5p | 8 | _......_ | 3 | 75 |
| MIMAT0025722 | gga-miR-6626-5p | 8 | __...... | 3 | 75 |
| MIMAT0025650 | gga-miR-6571-3p | 7 | __...... | 2 | 75 |
| MIMAT0025565 | bta-miR-6529a | 6 | __...... | 1 | 75 |
| MIMAT0024722 | nta-miR477b | 1 | __...... | 6 | 75 |
| MIMAT0024507 | mse-miR-6099 | 7 | ......__ | 2 | 75 |
| MIMAT0024281 | ggo-miR-3615 | 1 | __...... | 6 | 75 |
| MIMAT0024086 | ggo-miR-185 | 8 | __...... | 3 | 75 |
| MIMAT0023811 | cgr-miR-185-5p | 8 | __...... | 3 | 75 |
| MIMAT0023542 | ame-miR-6001-3p | 1 | _......_ | 6 | 75 |
| MIMAT0023130 | mtr-miR5750 | 8 | __...... | 3 | 75 |
| MIMAT0022468 | hsa-miR-5680 | 6 | ......__ | 1 | 75 |
| MIMAT0022098 | aca-miR-5465 | 6 | _......_ | 1 | 75 |
| MIMAT0022012 | aca-miR-5402-5p | 3 | _......_ | 8 | 75 |
| MIMAT0021675 | gma-miR4413b | 8 | _......_ | 3 | 75 |
| MIMAT0021603 | gma-miR5369 | 7 | ......__ | 2 | 75 |
| MIMAT0021558 | asu-miR-5350d-5p | 3 | ......__ | 8 | 75 |
| MIMAT0021552 | asu-miR-5350a-5p | 3 | ......__ | 8 | 75 |
| MIMAT0021178 | mtr-miR5221 | 8 | __...... | 3 | 75 |
| MIMAT0020614 | mmu-miR-3473c | 1 | __...... | 6 | 75 |
| MIMAT0020186 | dme-miR-4963-3p | 2 | _......_ | 7 | 75 |
| MIMAT0020467 | bfl-miR-4882b | 7 | ......__ | 2 | 75 |
| MIMAT0020466 | bfl-miR-4882a | 7 | ......__ | 2 | 75 |
| MIMAT0019891 | hsa-miR-4753-3p | 1 | _......_ | 6 | 75 |
| MIMAT0019704 | hsa-miR-4644 | 8 | __...... | 3 | 75 |
| MIMAT0018338 | gma-miR4413a | 7 | _......_ | 2 | 75 |
| MIMAT0018308 | gma-miR4393a | 7 | ......__ | 2 | 75 |
| MIMAT0018200 | hsa-miR-3925-5p | 7 | _......_ | 2 | 75 |
| MIMAT0018193 | hsa-miR-3919 | 8 | _......_ | 3 | 75 |
| MIMAT0017994 | hsa-miR-3615 | 1 | __...... | 6 | 75 |
| MIMAT0016858 | hsa-miR-4306 | 8 | __...... | 3 | 75 |
| MIMAT0016558 | cin-miR-4034-3p | 3 | ......__ | 8 | 75 |
| MIMAT0016316 | sja-miR-3507 | 6 | _......_ | 1 | 75 |
| MIMAT0016140 | ppy-miR-942 | 3 | _......_ | 8 | 75 |
| MIMAT0015989 | ppy-miR-539 | 7 | ......__ | 2 | 75 |
| MIMAT0015781 | ppy-miR-185 | 8 | __...... | 3 | 75 |
| MIMAT0015645 | mmu-miR-3473a | 8 | __...... | 3 | 75 |
| MIMAT0017655 | aly-miR868-5p | 2 | ......__ | 7 | 75 |
| MIMAT0017647 | aly-miR859-5p | 1 | __...... | 6 | 75 |
| MIMAT0017532 | aly-miR173a-3p | 3 | _......_ | 8 | 75 |
| MIMAT0015422 | bmo-miR-3239 | 8 | _......_ | 3 | 75 |
| MIMAT0014985 | hsa-miR-3123 | 7 | _......_ | 2 | 75 |
| MIMAT0014061 | osa-miR2930 | 1 | _......_ | 6 | 75 |
| MIMAT0015347 | zma-miR395o-5p | 2 | _......_ | 7 | 75 |
| MIMAT0015346 | zma-miR395n-5p | 2 | _......_ | 7 | 75 |
| MIMAT0013167 | eca-miR-539 | 7 | ......__ | 2 | 75 |
| MIMAT0012865 | hvt-miR-H13 | 2 | ......__ | 7 | 75 |
| MIMAT0012721 | hvt-miR-H9-5p | 1 | ......__ | 6 | 75 |
| MIMAT0012720 | hvt-miR-H8 | 2 | __...... | 7 | 75 |
| MIMAT0013715 | bmo-miR-2806 | 2 | _......_ | 7 | 75 |
| MIMAT0013684 | bmo-miR-2787-3p | 7 | ......__ | 2 | 75 |
| MIMAT0013585 | cte-miR-2716 | 6 | __...... | 1 | 75 |
| MIMAT0012223 | dps-miR-980-5p | 3 | __...... | 8 | 75 |
| MIMAT0011970 | bta-miR-1584-3p | 2 | __...... | 7 | 75 |
| MIMAT0011162 | hsa-miR-2117 | 3 | _......_ | 8 | 75 |
| MIMAT0010059 | osa-miR2097-3p | 1 | _......_ | 6 | 75 |
| MIMAT0009909 | cfa-miR-539 | 7 | ......__ | 2 | 75 |
| MIMAT0009342 | bta-miR-539 | 7 | ......__ | 2 | 75 |
| MIMAT0009247 | bta-miR-185 | 8 | __...... | 3 | 75 |
| MIMAT0032090 | dvi-miR-6-1-5p | 6 | _......_ | 1 | 75 |
| MIMAT0032070 | dvi-miR-6-3-5p | 6 | _......_ | 1 | 75 |
| MIMAT0008348 | ptr-miR-942 | 3 | _......_ | 8 | 75 |
| MIMAT0008214 | ptr-miR-539 | 7 | ......__ | 2 | 75 |
| MIMAT0008053 | ptr-miR-185 | 8 | __...... | 3 | 75 |
| MIMAT0007978 | ptr-miR-1253 | 6 | _......_ | 1 | 75 |
| MIMAT0007759 | ssc-miR-185 | 8 | __...... | 3 | 75 |
| MIMAT0006660 | cfa-miR-185 | 8 | __...... | 3 | 75 |
| MIMAT0015266 | cel-miR-1822-5p | 3 | ......__ | 8 | 75 |
| MIMAT0006542 | mml-miR-942-5p | 2 | _......_ | 7 | 75 |
| MIMAT0006405 | mml-miR-539 | 7 | ......__ | 2 | 75 |
| MIMAT0006219 | mml-miR-185-5p | 8 | __...... | 3 | 75 |
| MIMAT0007712 | gga-miR-1756b | 1 | _......_ | 6 | 75 |
| MIMAT0006016 | hiv1-miR-TAR-5p | 1 | __...... | 6 | 75 |
| MIMAT0005979 | mdv1-miR-M9-5p | 2 | ......__ | 7 | 75 |
| MIMAT0007215 | oan-miR-1406-3p | 3 | __...... | 8 | 75 |
| MIMAT0005904 | hsa-miR-1253 | 6 | _......_ | 1 | 75 |
| MIMAT0005534 | mcmv-miR-m01-2-5p | 8 | _......_ | 3 | 75 |
| MIMAT0005165 | ppt-miR1049 | 1 | __...... | 6 | 75 |
| MIMAT0005113 | ppt-miR1026b | 7 | ......__ | 2 | 75 |
| MIMAT0005112 | ppt-miR1026a | 7 | ......__ | 2 | 75 |
| MIMAT0005105 | ppt-miR1023b-3p | 6 | _......_ | 1 | 75 |
| MIMAT0005103 | ppt-miR1023a-3p | 6 | _......_ | 1 | 75 |
| MIMAT0004474 | mdv2-miR-M28-5p | 2 | ......__ | 7 | 75 |
| MIMAT0005031 | cel-miR-1018 | 7 | __...... | 2 | 75 |
| MIMAT0004985 | hsa-miR-942-5p | 3 | _......_ | 8 | 75 |
| MIMAT0004847 | mmu-miR-882 | 8 | __...... | 3 | 75 |
| MIMAT0004845 | mmu-miR-881-5p | 8 | __...... | 3 | 75 |
| MIMAT0004303 | ath-miR859 | 1 | __...... | 6 | 75 |
| MIMAT0004236 | mmu-miR-741-3p | 7 | __...... | 2 | 75 |
| MIMAT0003176 | rno-miR-539-5p | 7 | ......__ | 2 | 75 |
| MIMAT0003169 | mmu-miR-539-5p | 7 | ......__ | 2 | 75 |
| MIMAT0003163 | hsa-miR-539-5p | 7 | ......__ | 2 | 75 |
| MIMAT0000862 | rno-miR-185-5p | 8 | __...... | 3 | 75 |
| MIMAT0000455 | hsa-miR-185-5p | 8 | __...... | 3 | 75 |
| MIMAT0000214 | mmu-miR-185-5p | 8 | __...... | 3 | 75 |
