| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tttggatc | 8 | ||
| MIMAT0031376 | osa-miR5079b | 1 | ........ | 8 | 100 |
| MIMAT0029955 | osa-miR7692-5p | 8 | ........ | 1 | 100 |
| MIMAT0020578 | osa-miR5079a | 1 | ........ | 8 | 100 |
| MIMAT0012596 | hsv1-miR-H7-3p | 1 | ........ | 8 | 100 |
| MIMAT0035671 | bra-miR9559-5p | 1 | ......._ | 7 | 87 |
| MIMAT0033911 | atr-miR159 | 1 | ......._ | 7 | 87 |
| MIMAT0031780 | cpa-miR159a | 1 | ......._ | 7 | 87 |
| MIMAT0031474 | ppe-miR393a | 8 | ......._ | 2 | 87 |
| MIMAT0031437 | ppe-miR159 | 1 | ......._ | 7 | 87 |
| MIMAT0030086 | bdi-miR159b-3p.1 | 1 | ......._ | 7 | 87 |
| MIMAT0029176 | mes-miR159b | 1 | ......._ | 7 | 87 |
| MIMAT0026160 | cme-miR159a | 1 | ......._ | 7 | 87 |
| MIMAT0025497 | htu-miR159a | 1 | ......._ | 7 | 87 |
| MIMAT0025283 | hbr-miR159a | 1 | ......._ | 7 | 87 |
| MIMAT0024639 | nta-miR159 | 1 | ......._ | 7 | 87 |
| MIMAT0027235 | lus-miR159c | 1 | ......._ | 7 | 87 |
| MIMAT0027233 | lus-miR159b | 1 | ......._ | 7 | 87 |
| MIMAT0024410 | mes-miR159a | 1 | ......._ | 7 | 87 |
| MIMAT0023014 | bra-miR5717 | 2 | ......._ | 8 | 87 |
| MIMAT0022029 | aca-miR-5411 | 1 | ......._ | 7 | 87 |
| MIMAT0021641 | gma-miR159e-3p | 1 | ......._ | 7 | 87 |
| MIMAT0020292 | ssp-miR159a | 1 | ......._ | 7 | 87 |
| MIMAT0018460 | csi-miR393 | 7 | ......._ | 1 | 87 |
| MIMAT0018450 | csi-miR159 | 1 | ......._ | 7 | 87 |
| MIMAT0018362 | far-miR159 | 1 | ......._ | 7 | 87 |
| MIMAT0018210 | hvu-miR159a | 1 | ......._ | 7 | 87 |
| MIMAT0018209 | hvu-miR159b | 1 | ......._ | 7 | 87 |
| MIMAT0016321 | ahy-miR159 | 1 | ......._ | 7 | 87 |
| MIMAT0017428 | aly-miR159c-3p | 1 | ......._ | 7 | 87 |
| MIMAT0017426 | aly-miR159b-3p | 1 | ......._ | 7 | 87 |
| MIMAT0017424 | aly-miR159a-3p | 1 | ......._ | 7 | 87 |
| MIMAT0015375 | hsv2-miR-H7-3p | 1 | ......._ | 7 | 87 |
| MIMAT0014152 | rco-miR159 | 1 | ......._ | 7 | 87 |
| MIMAT0013980 | zma-miR159k-3p | 1 | ......._ | 7 | 87 |
| MIMAT0013979 | zma-miR159j-3p | 1 | ......._ | 7 | 87 |
| MIMAT0013975 | zma-miR159f-3p | 1 | ......._ | 7 | 87 |
| MIMAT0015301 | pvu-miR159a.1 | 1 | ......._ | 7 | 87 |
| MIMAT0011166 | mtr-miR159a | 1 | ......._ | 7 | 87 |
| MIMAT0010153 | bra-miR159a | 1 | ......._ | 7 | 87 |
| MIMAT0009141 | sly-miR159 | 1 | ......._ | 7 | 87 |
| MIMAT0007864 | mmu-miR-1897-5p | 2 | ......._ | 8 | 87 |
| MIMAT0005650 | vvi-miR159c | 1 | ......._ | 7 | 87 |
| MIMAT0005635 | bna-miR159 | 1 | ......._ | 7 | 87 |
| MIMAT0005344 | tae-miR159b | 1 | ......._ | 7 | 87 |
| MIMAT0005343 | tae-miR159a | 1 | ......._ | 7 | 87 |
| MIMAT0005210 | ppt-miR1078 | 1 | ......._ | 7 | 87 |
| MIMAT0001902 | ptc-miR159b | 1 | ......._ | 7 | 87 |
| MIMAT0001901 | ptc-miR159a | 1 | ......._ | 7 | 87 |
| MIMAT0001712 | zma-miR159b-3p | 1 | ......._ | 7 | 87 |
| MIMAT0001711 | zma-miR159a-3p | 1 | ......._ | 7 | 87 |
| MIMAT0001675 | gma-miR159a-3p | 1 | ......._ | 7 | 87 |
| MIMAT0001661 | sof-miR159e | 1 | ......._ | 7 | 87 |
| MIMAT0001660 | sof-miR159d | 1 | ......._ | 7 | 87 |
| MIMAT0001659 | sof-miR159b | 1 | ......._ | 7 | 87 |
| MIMAT0001658 | sof-miR159a | 1 | ......._ | 7 | 87 |
| MIMAT0001468 | sbi-miR159a | 1 | ......._ | 7 | 87 |
| MIMAT0001023 | osa-miR159b | 1 | ......._ | 7 | 87 |
| MIMAT0001022 | osa-miR159a.1 | 1 | ......._ | 7 | 87 |
| MIMAT0001015 | ath-miR159c | 1 | ......._ | 7 | 87 |
| MIMAT0000207 | ath-miR159b-3p | 1 | ......._ | 7 | 87 |
| MIMAT0000177 | ath-miR159a | 1 | ......._ | 7 | 87 |
| MIMAT0032815 | cel-miR-8201-5p | 1 | .c...... | 8 | 87 |
| MIMAT0028991 | oan-miR-7420-3p | 1 | .a...... | 8 | 87 |
| MIMAT0025786 | gga-miR-6681-5p | 1 | .c...... | 8 | 87 |
| MIMAT0027314 | ppe-miR6284 | 1 | ......c. | 8 | 87 |
| MIMAT0023207 | gma-miR319n | 1 | ......c. | 8 | 87 |
| MIMAT0021114 | osa-miR5161 | 1 | .c...... | 8 | 87 |
| MIMAT0014066 | rlcv-miR-rL1-20-3p | 1 | .g...... | 8 | 87 |
| MIMAT0037096 | ata-miR393-5p | 7 | ......__ | 2 | 75 |
| MIMAT0036386 | gma-miR9755 | 7 | __...... | 2 | 75 |
| MIMAT0036379 | gma-miR319p | 2 | ......__ | 7 | 75 |
| MIMAT0036260 | chi-miR-497-3p | 6 | ......__ | 1 | 75 |
| MIMAT0035792 | tae-miR5175-5p | 7 | ......__ | 2 | 75 |
| MIMAT0035702 | bra-miR158-3p | 8 | ......__ | 3 | 75 |
| MIMAT0035424 | nve-miR-9465 | 1 | _......_ | 6 | 75 |
| MIMAT0034838 | efu-miR-9232 | 1 | _......_ | 6 | 75 |
| MIMAT0034354 | cfa-miR-8859a | 1 | __...... | 6 | 75 |
| MIMAT0034285 | cfa-miR-8795 | 1 | _......_ | 6 | 75 |
| MIMAT0034261 | gra-miR8718 | 3 | ......__ | 8 | 75 |
| MIMAT0034256 | gra-miR7493b | 1 | _......_ | 6 | 75 |
| MIMAT0034231 | gra-miR8743b | 1 | ......__ | 6 | 75 |
| MIMAT0034212 | gra-miR8774 | 1 | _......_ | 6 | 75 |
| MIMAT0034211 | gra-miR8773 | 1 | _......_ | 6 | 75 |
| MIMAT0034049 | gra-miR8678 | 3 | ......__ | 8 | 75 |
| MIMAT0034039 | gra-miR8668 | 2 | ......__ | 7 | 75 |
| MIMAT0033935 | atr-miR393 | 6 | ......__ | 1 | 75 |
| MIMAT0033932 | atr-miR319e | 1 | ......__ | 6 | 75 |
| MIMAT0033931 | atr-miR319d | 1 | ......__ | 6 | 75 |
| MIMAT0033929 | atr-miR319b | 1 | ......__ | 6 | 75 |
| MIMAT0033655 | sma-miR-8468-5p | 7 | _......_ | 2 | 75 |
| MIMAT0033577 | sma-miR-8436-3p | 3 | ......__ | 8 | 75 |
| MIMAT0033428 | str-miR-8384-5p | 2 | __...... | 7 | 75 |
| MIMAT0032850 | ppc-miR-2235b-5p | 8 | _......_ | 3 | 75 |
| MIMAT0032796 | cel-miR-8191-3p | 8 | _......_ | 3 | 75 |
| MIMAT0032771 | ath-miR8172 | 2 | __...... | 7 | 75 |
| MIMAT0031814 | cpa-miR393 | 6 | ......__ | 1 | 75 |
| MIMAT0031781 | cpa-miR159b | 2 | _......_ | 7 | 75 |
| MIMAT0031701 | bbe-miR-4878-5p | 2 | ......__ | 7 | 75 |
| MIMAT0031475 | ppe-miR393b | 6 | ......__ | 1 | 75 |
| MIMAT0031324 | stu-miR393-5p | 6 | ......__ | 1 | 75 |
| MIMAT0030943 | stu-miR8033-5p | 7 | ......__ | 2 | 75 |
| MIMAT0031205 | stu-miR7980b-5p | 7 | ......__ | 2 | 75 |
| MIMAT0030914 | stu-miR8017 | 6 | _......_ | 1 | 75 |
| MIMAT0030912 | stu-miR8015-5p | 3 | _......_ | 8 | 75 |
| MIMAT0030903 | stu-miR5303e | 2 | ......__ | 7 | 75 |
| MIMAT0030858 | stu-miR5303d | 2 | ......__ | 7 | 75 |
| MIMAT0030857 | stu-miR5303b | 2 | ......__ | 7 | 75 |
| MIMAT0030856 | stu-miR5303a | 2 | ......__ | 7 | 75 |
| MIMAT0030855 | stu-miR5303c | 2 | ......__ | 7 | 75 |
| MIMAT0030560 | prd-miR-58-5p | 2 | __...... | 7 | 75 |
| MIMAT0030425 | hsa-miR-7850-5p | 2 | ......__ | 7 | 75 |
| MIMAT0030236 | bdi-miR7748a-5p | 6 | _......_ | 1 | 75 |
| MIMAT0030196 | bdi-miR7731-5p | 7 | ......__ | 2 | 75 |
| MIMAT0030128 | bdi-miR5185l-3p | 1 | ......__ | 6 | 75 |
| MIMAT0029265 | mes-miR393d | 6 | ......__ | 1 | 75 |
| MIMAT0029264 | mes-miR393c | 6 | ......__ | 1 | 75 |
| MIMAT0029263 | mes-miR393b | 6 | ......__ | 1 | 75 |
| MIMAT0029262 | mes-miR393a | 6 | ......__ | 1 | 75 |
| MIMAT0029009 | oan-miR-7429-3p | 1 | ......__ | 6 | 75 |
| MIMAT0028860 | mdo-miR-7386g-5p | 3 | _......_ | 8 | 75 |
| MIMAT0028852 | mdo-miR-7386e-5p | 3 | _......_ | 8 | 75 |
| MIMAT0028844 | mdo-miR-7386i-5p | 2 | _......_ | 7 | 75 |
| MIMAT0028604 | mdo-miR-7305-5p | 8 | _......_ | 3 | 75 |
| MIMAT0028600 | mdo-miR-7303-5p | 8 | _......_ | 3 | 75 |
| MIMAT0028591 | mdo-miR-7299-3p | 1 | ......__ | 6 | 75 |
| MIMAT0028500 | mdo-miR-7266-5p | 7 | _......_ | 2 | 75 |
| MIMAT0028470 | mdo-miR-7252-5p | 1 | _......_ | 6 | 75 |
| MIMAT0028458 | mdo-miR-7246-5p | 7 | _......_ | 2 | 75 |
| MIMAT0028212 | hsa-miR-7151-5p | 6 | __...... | 1 | 75 |
| MIMAT0026184 | cme-miR7130 | 2 | ......__ | 7 | 75 |
| MIMAT0026168 | cme-miR159b | 2 | _......_ | 7 | 75 |
| MIMAT0026138 | cme-miR393c | 6 | ......__ | 1 | 75 |
| MIMAT0026137 | cme-miR393b | 6 | ......__ | 1 | 75 |
| MIMAT0026136 | cme-miR393a | 6 | ......__ | 1 | 75 |
| MIMAT0026058 | mdm-miR319c | 6 | _......_ | 1 | 75 |
| MIMAT0025977 | mdm-miR393c | 6 | ......__ | 1 | 75 |
| MIMAT0025976 | mdm-miR393b | 6 | ......__ | 1 | 75 |
| MIMAT0025975 | mdm-miR393a | 6 | ......__ | 1 | 75 |
| MIMAT0025899 | mdm-miR159b | 2 | _......_ | 7 | 75 |
| MIMAT0025898 | mdm-miR159a | 2 | _......_ | 7 | 75 |
| MIMAT0027815 | mmu-miR-6957-3p | 1 | __...... | 6 | 75 |
| MIMAT0025513 | htu-miR393c | 6 | ......__ | 1 | 75 |
| MIMAT0025512 | htu-miR393b | 6 | ......__ | 1 | 75 |
| MIMAT0025511 | htu-miR393a | 6 | ......__ | 1 | 75 |
| MIMAT0025349 | pde-miR1312 | 1 | ......__ | 6 | 75 |
| MIMAT0024918 | gma-miR393k | 7 | ......__ | 2 | 75 |
| MIMAT0024917 | gma-miR393j | 7 | ......__ | 2 | 75 |
| MIMAT0024916 | gma-miR393i | 7 | ......__ | 2 | 75 |
| MIMAT0024915 | gma-miR393h | 7 | ......__ | 2 | 75 |
| MIMAT0024914 | gma-miR393g | 6 | ......__ | 1 | 75 |
| MIMAT0024913 | gma-miR393f | 6 | ......__ | 1 | 75 |
| MIMAT0024912 | gma-miR393e | 6 | ......__ | 1 | 75 |
| MIMAT0024911 | gma-miR393d | 6 | ......__ | 1 | 75 |
| MIMAT0024910 | gma-miR393c-5p | 6 | ......__ | 1 | 75 |
| MIMAT0024812 | hvu-miR6188 | 3 | __...... | 8 | 75 |
| MIMAT0024783 | hbr-miR6166 | 2 | _......_ | 7 | 75 |
| MIMAT0027232 | lus-miR393d | 6 | ......__ | 1 | 75 |
| MIMAT0027229 | lus-miR393c | 6 | ......__ | 1 | 75 |
| MIMAT0027218 | lus-miR393b | 6 | ......__ | 1 | 75 |
| MIMAT0027173 | lus-miR393a | 6 | ......__ | 1 | 75 |
| MIMAT0024524 | cca-miR393 | 6 | ......__ | 1 | 75 |
| MIMAT0024246 | ggo-miR-4520b | 1 | ......__ | 6 | 75 |
| MIMAT0023013 | bra-miR5716 | 1 | _......_ | 6 | 75 |
| MIMAT0022412 | ath-miR5648-5p | 1 | ......__ | 6 | 75 |
| MIMAT0022392 | ath-miR5632-3p | 1 | _......_ | 6 | 75 |
| MIMAT0022227 | mtr-miR5561-5p | 3 | ......__ | 8 | 75 |
| MIMAT0022139 | osa-miR5506 | 1 | __...... | 6 | 75 |
| MIMAT0022123 | osa-miR5490 | 1 | _......_ | 6 | 75 |
| MIMAT0022085 | aca-miR-5458 | 7 | __...... | 2 | 75 |
| MIMAT0021945 | aca-miR-363-5p | 2 | __...... | 7 | 75 |
| MIMAT0021353 | mtr-miR5290 | 3 | ......__ | 8 | 75 |
| MIMAT0021207 | mtr-miR4414a-3p | 6 | _......_ | 1 | 75 |
| MIMAT0020732 | bdi-miR5183 | 3 | ......__ | 8 | 75 |
| MIMAT0020730 | bdi-miR5181a-5p | 7 | __...... | 2 | 75 |
| MIMAT0020698 | bdi-miR393b-5p | 6 | ......__ | 1 | 75 |
| MIMAT0020694 | bdi-miR393a | 6 | ......__ | 1 | 75 |
| MIMAT0020692 | bdi-miR159a-3p | 2 | _......_ | 7 | 75 |
| MIMAT0021028 | hsa-miR-5004-3p | 2 | _......_ | 7 | 75 |
| MIMAT0020461 | bfl-miR-4878 | 2 | ......__ | 7 | 75 |
| MIMAT0020422 | tcc-miR393b | 6 | ......__ | 1 | 75 |
| MIMAT0020421 | tcc-miR393a | 6 | ......__ | 1 | 75 |
| MIMAT0020418 | tcc-miR319 | 1 | ......__ | 6 | 75 |
| MIMAT0020300 | hsa-miR-4520-2-3p | 1 | ......__ | 6 | 75 |
| MIMAT0018459 | csi-miR319 | 1 | ......__ | 6 | 75 |
| MIMAT0018290 | gma-miR4383 | 3 | _......_ | 8 | 75 |
| MIMAT0018863 | tca-miR-3883-3p | 6 | ......__ | 1 | 75 |
| MIMAT0018064 | dme-miR-3645-3p | 1 | ......__ | 6 | 75 |
| MIMAT0018032 | vvi-miR3631b-3p | 3 | _......_ | 8 | 75 |
| MIMAT0017941 | aly-miR4250 | 6 | ......__ | 1 | 75 |
| MIMAT0017935 | aly-miR4246 | 8 | _......_ | 3 | 75 |
| MIMAT0016815 | cin-miR-4196-5p | 8 | ......__ | 3 | 75 |
| MIMAT0016078 | ppy-miR-640 | 8 | __...... | 3 | 75 |
| MIMAT0015707 | nvi-miR-3478 | 2 | _......_ | 7 | 75 |
| MIMAT0017725 | aly-miR3445-3p.1 | 1 | ......__ | 6 | 75 |
| MIMAT0017651 | aly-miR861-5p | 2 | ......__ | 7 | 75 |
| MIMAT0017541 | aly-miR393b-5p | 6 | ......__ | 1 | 75 |
| MIMAT0017539 | aly-miR393a-5p | 6 | ......__ | 1 | 75 |
| MIMAT0015630 | bmo-miR-3422 | 1 | __...... | 6 | 75 |
| MIMAT0015491 | bmo-miR-3303 | 1 | _......_ | 6 | 75 |
| MIMAT0026972 | tgu-miR-363-5p | 2 | __...... | 7 | 75 |
| MIMAT0014334 | ghr-miR393 | 6 | ......__ | 1 | 75 |
| MIMAT0014310 | aae-miR-263b-3p | 1 | __...... | 6 | 75 |
| MIMAT0014186 | rco-miR393 | 6 | ......__ | 1 | 75 |
| MIMAT0020364 | ath-miR2934-3p | 7 | _......_ | 2 | 75 |
| MIMAT0014000 | zma-miR393c-5p | 6 | ......__ | 1 | 75 |
| MIMAT0013999 | zma-miR393b-5p | 6 | ......__ | 1 | 75 |
| MIMAT0013978 | zma-miR159i-3p | 1 | ......__ | 6 | 75 |
| MIMAT0013977 | zma-miR159h-3p | 1 | ......__ | 6 | 75 |
| MIMAT0013976 | zma-miR159g-3p | 1 | ......__ | 6 | 75 |
| MIMAT0013746 | bmo-miR-2832 | 1 | _......_ | 6 | 75 |
| MIMAT0012552 | aqc-miR159 | 1 | ......__ | 6 | 75 |
| MIMAT0012502 | dsi-miR-976 | 1 | _......_ | 6 | 75 |
| MIMAT0011348 | sbi-miR393b | 6 | ......__ | 1 | 75 |
| MIMAT0009129 | pta-miR1312 | 1 | ......__ | 6 | 75 |
| MIMAT0008294 | ptr-miR-640 | 8 | __...... | 3 | 75 |
| MIMAT0006557 | vvi-miR393a | 6 | ......__ | 1 | 75 |
| MIMAT0006556 | vvi-miR319e | 1 | ......__ | 6 | 75 |
| MIMAT0006482 | mml-miR-640 | 8 | __...... | 3 | 75 |
| MIMAT0007644 | gga-miR-1740-3p | 8 | _......_ | 3 | 75 |
| MIMAT0007483 | gga-miR-1616 | 1 | __...... | 6 | 75 |
| MIMAT0007362 | gma-miR393a | 6 | ......__ | 1 | 75 |
| MIMAT0005993 | osa-miR1439 | 2 | ......__ | 7 | 75 |
| MIMAT0006924 | oan-miR-1420b-5p | 6 | _......_ | 1 | 75 |
| MIMAT0005708 | vvi-miR393b | 6 | ......__ | 1 | 75 |
| MIMAT0005217 | smo-miR159 | 2 | _......_ | 7 | 75 |
| MIMAT0005174 | ppt-miR1056 | 1 | __...... | 6 | 75 |
| MIMAT0020881 | dme-miR-984-3p | 6 | _......_ | 1 | 75 |
| MIMAT0005492 | dme-miR-976-3p | 1 | _......_ | 6 | 75 |
| MIMAT0004992 | pta-miR159c | 2 | _......_ | 7 | 75 |
| MIMAT0004991 | pta-miR159b | 1 | _......_ | 6 | 75 |
| MIMAT0004990 | pta-miR159a | 1 | _......_ | 6 | 75 |
| MIMAT0004447 | bna-miR393 | 6 | ......__ | 1 | 75 |
| MIMAT0011087 | mtr-miR393b-5p | 6 | ......__ | 1 | 75 |
| MIMAT0003310 | hsa-miR-640 | 8 | __...... | 3 | 75 |
| MIMAT0026610 | hsa-miR-519d-5p | 8 | ......__ | 3 | 75 |
| MIMAT0002017 | ptc-miR393c | 6 | ......__ | 1 | 75 |
| MIMAT0002016 | ptc-miR393b-5p | 6 | ......__ | 1 | 75 |
| MIMAT0002015 | ptc-miR393a-5p | 6 | ......__ | 1 | 75 |
| MIMAT0001904 | ptc-miR159d | 2 | _......_ | 7 | 75 |
| MIMAT0001753 | sbi-miR159b | 2 | _......_ | 7 | 75 |
| MIMAT0001747 | zma-miR393a-5p | 6 | ......__ | 1 | 75 |
| MIMAT0001714 | zma-miR159d-3p | 2 | _......_ | 7 | 75 |
| MIMAT0001713 | zma-miR159c-3p | 2 | _......_ | 7 | 75 |
| MIMAT0001662 | sof-miR159c | 2 | _......_ | 7 | 75 |
| MIMAT0001647 | mtr-miR393a | 6 | ......__ | 1 | 75 |
| MIMAT0001426 | sbi-miR393a | 6 | ......__ | 1 | 75 |
| MIMAT0001338 | osa-miR426 | 2 | ......__ | 7 | 75 |
| MIMAT0001337 | ath-miR426 | 2 | ......__ | 7 | 75 |
| MIMAT0001078 | osa-miR393b-5p | 6 | ......__ | 1 | 75 |
| MIMAT0001027 | osa-miR159f | 2 | _......_ | 7 | 75 |
| MIMAT0001026 | osa-miR159e | 2 | _......_ | 7 | 75 |
| MIMAT0001025 | osa-miR159d | 2 | _......_ | 7 | 75 |
| MIMAT0001024 | osa-miR159c | 2 | _......_ | 7 | 75 |
| MIMAT0000957 | osa-miR393a | 6 | ......__ | 1 | 75 |
| MIMAT0000935 | ath-miR393b-5p | 6 | ......__ | 1 | 75 |
| MIMAT0000934 | ath-miR393a-5p | 6 | ......__ | 1 | 75 |
