| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tttggga | 7 | ||
| MIMAT0034205 | gra-miR482c | 8 | ....... | 2 | 100 |
| MIMAT0033393 | str-miR-8375-3p | 1 | ....... | 7 | 100 |
| MIMAT0033375 | str-miR-7880p-3p | 1 | ....... | 7 | 100 |
| MIMAT0025482 | hsa-miR-6513-5p | 1 | ....... | 7 | 100 |
| MIMAT0025210 | ptc-miR6471 | 1 | ....... | 7 | 100 |
| MIMAT0025095 | mmu-miR-6352 | 1 | ....... | 7 | 100 |
| MIMAT0023170 | gma-miR393b | 1 | ....... | 7 | 100 |
| MIMAT0021250 | mtr-miR2643b-3p | 1 | ....... | 7 | 100 |
| MIMAT0018187 | hsa-miR-3913-5p | 1 | ....... | 7 | 100 |
| MIMAT0018028 | vvi-miR3630-3p | 1 | ....... | 7 | 100 |
| MIMAT0017930 | aly-miR4241 | 2 | ....... | 8 | 100 |
| MIMAT0017676 | aly-miR158b-3p | 7 | ....... | 1 | 100 |
| MIMAT0017422 | aly-miR158a-3p | 7 | ....... | 1 | 100 |
| MIMAT0013411 | mtr-miR2643a | 1 | ....... | 7 | 100 |
| MIMAT0010202 | hsv2-miR-H3 | 1 | ....... | 7 | 100 |
| MIMAT0022936 | mtr-miR393b-3p | 1 | ....... | 7 | 100 |
| MIMAT0000176 | ath-miR158a-3p | 7 | ....... | 1 | 100 |
| MIMAT0037076 | ssc-miR-9857-5p | 3 | _...... | 8 | 85 |
| MIMAT0036736 | oha-miR-150 | 8 | _...... | 3 | 85 |
| MIMAT0036236 | chi-miR-450-3p | 2 | _...... | 7 | 85 |
| MIMAT0036011 | chi-miR-186-3p | 6 | ......_ | 1 | 85 |
| MIMAT0035980 | chi-miR-150 | 8 | _...... | 3 | 85 |
| MIMAT0035562 | dvi-miR-193-5p | 3 | _...... | 8 | 85 |
| MIMAT0035488 | bdi-miR9482 | 3 | ......_ | 8 | 85 |
| MIMAT0035472 | sly-miR9477-3p | 1 | _...... | 6 | 85 |
| MIMAT0035203 | dme-miR-9370-5p | 1 | ......_ | 6 | 85 |
| MIMAT0035077 | efu-miR-150 | 8 | _...... | 3 | 85 |
| MIMAT0034988 | efu-miR-9313 | 1 | ......_ | 6 | 85 |
| MIMAT0034344 | cfa-miR-8849 | 3 | _...... | 8 | 85 |
| MIMAT0033852 | atr-miR8570 | 3 | _...... | 8 | 85 |
| MIMAT0033132 | ppc-miR-8304a-5p | 2 | _...... | 7 | 85 |
| MIMAT0032383 | ssa-miR-150-5p | 8 | _...... | 3 | 85 |
| MIMAT0032251 | rgl-miR7807a-3p | 1 | _...... | 6 | 85 |
| MIMAT0030034 | oar-miR-150 | 8 | _...... | 3 | 85 |
| MIMAT0029544 | ipu-miR-129b | 1 | ......_ | 6 | 85 |
| MIMAT0029426 | ipu-miR-150 | 8 | _...... | 3 | 85 |
| MIMAT0029372 | lja-miR7545 | 1 | _...... | 6 | 85 |
| MIMAT0028692 | mdo-miR-7341-5p | 6 | ......_ | 1 | 85 |
| MIMAT0028501 | mdo-miR-7266-3p | 1 | _...... | 6 | 85 |
| MIMAT0028169 | dev-miR-D1-5p | 1 | _...... | 6 | 85 |
| MIMAT0027706 | mmu-miR-6903-5p | 1 | _...... | 6 | 85 |
| MIMAT0027528 | hsa-miR-6814-5p | 6 | _...... | 1 | 85 |
| MIMAT0027460 | hsa-miR-6780a-5p | 1 | _...... | 6 | 85 |
| MIMAT0027381 | hsa-miR-6740-5p | 3 | ......_ | 8 | 85 |
| MIMAT0027357 | hsa-miR-6728-5p | 1 | _...... | 6 | 85 |
| MIMAT0025801 | gga-miR-6695-5p | 1 | _...... | 6 | 85 |
| MIMAT0025365 | ssc-miR-150 | 8 | _...... | 3 | 85 |
| MIMAT0031169 | ppe-miR482c-3p | 7 | _...... | 2 | 85 |
| MIMAT0027273 | ppe-miR482b-3p | 8 | _...... | 3 | 85 |
| MIMAT0024340 | mml-miR-3122 | 2 | _...... | 7 | 85 |
| MIMAT0024217 | ggo-miR-150 | 8 | _...... | 3 | 85 |
| MIMAT0023963 | cgr-miR-450b-3p | 3 | _...... | 8 | 85 |
| MIMAT0022806 | sha-miR-150 | 8 | _...... | 3 | 85 |
| MIMAT0022584 | ola-miR-150 | 8 | _...... | 3 | 85 |
| MIMAT0022505 | mmu-miR-5710 | 3 | _...... | 8 | 85 |
| MIMAT0021784 | aca-miR-150-5p | 8 | _...... | 3 | 85 |
| MIMAT0027083 | bdi-miR5178-5p | 2 | _...... | 7 | 85 |
| MIMAT0020638 | mmu-miR-5127 | 8 | _...... | 3 | 85 |
| MIMAT0020628 | mmu-miR-5120 | 1 | ......_ | 6 | 85 |
| MIMAT0020523 | ath-miR5019 | 3 | _...... | 8 | 85 |
| MIMAT0021002 | gma-miR482c-3p | 7 | _...... | 2 | 85 |
| MIMAT0020008 | sko-miR-4817-5p | 1 | _...... | 6 | 85 |
| MIMAT0019857 | hsa-miR-4733-5p | 8 | _...... | 3 | 85 |
| MIMAT0018940 | hsa-miR-4425 | 3 | _...... | 8 | 85 |
| MIMAT0018240 | gma-miR4351 | 2 | _...... | 7 | 85 |
| MIMAT0018608 | ame-miR-3739 | 1 | _...... | 6 | 85 |
| MIMAT0016551 | cin-miR-4031-5p | 6 | ......_ | 1 | 85 |
| MIMAT0016222 | ppy-miR-1302 | 1 | _...... | 6 | 85 |
| MIMAT0015895 | ppy-miR-450b-3p | 1 | _...... | 6 | 85 |
| MIMAT0015774 | ppy-miR-150 | 8 | _...... | 3 | 85 |
| MIMAT0015718 | ssc-miR-450c-3p | 2 | _...... | 7 | 85 |
| MIMAT0017721 | aly-miR3444a-5p | 1 | _...... | 6 | 85 |
| MIMAT0017700 | aly-miR774b-3p | 8 | ......_ | 3 | 85 |
| MIMAT0015553 | bmo-miR-3367 | 1 | ......_ | 6 | 85 |
| MIMAT0014984 | hsa-miR-3122 | 2 | _...... | 7 | 85 |
| MIMAT0014919 | mmu-miR-3100-5p | 1 | _...... | 6 | 85 |
| MIMAT0014760 | api-miR-3024 | 3 | ......_ | 8 | 85 |
| MIMAT0014689 | hsv1-miR-H12 | 1 | _...... | 6 | 85 |
| MIMAT0017380 | ssc-miR-450b-3p | 1 | _...... | 6 | 85 |
| MIMAT0013221 | eca-miR-450b-3p | 1 | _...... | 6 | 85 |
| MIMAT0013011 | eca-miR-150 | 8 | _...... | 3 | 85 |
| MIMAT0013010 | eca-miR-1302e | 1 | _...... | 6 | 85 |
| MIMAT0012969 | eca-miR-1302d | 1 | _...... | 6 | 85 |
| MIMAT0012934 | eca-miR-1302b | 1 | _...... | 6 | 85 |
| MIMAT0012907 | eca-miR-1302 | 1 | _...... | 6 | 85 |
| MIMAT0012748 | mdo-miR-150-5p | 8 | _...... | 3 | 85 |
| MIMAT0012429 | dsi-miR-991-5p | 7 | _...... | 2 | 85 |
| MIMAT0012277 | dps-miR-193-5p | 3 | _...... | 8 | 85 |
| MIMAT0020913 | dme-miR-2492-5p | 1 | _...... | 6 | 85 |
| MIMAT0012019 | bta-miR-2284h-5p | 6 | ......_ | 1 | 85 |
| MIMAT0011765 | zma-miR2118f | 7 | _...... | 2 | 85 |
| MIMAT0011757 | osa-miR2118r | 7 | _...... | 2 | 85 |
| MIMAT0011744 | osa-miR2118e | 7 | _...... | 2 | 85 |
| MIMAT0011165 | mdm-miR482a-3p | 7 | _...... | 2 | 85 |
| MIMAT0009459 | mmu-miR-1982-5p | 1 | _...... | 6 | 85 |
| MIMAT0008152 | ptr-miR-450b | 1 | _...... | 6 | 85 |
| MIMAT0008044 | ptr-miR-150 | 8 | _...... | 3 | 85 |
| MIMAT0008021 | ptr-miR-1302 | 1 | _...... | 6 | 85 |
| MIMAT0006602 | cfa-miR-150 | 8 | _...... | 3 | 85 |
| MIMAT0006334 | mml-miR-450b-3p | 1 | _...... | 6 | 85 |
| MIMAT0026878 | mml-miR-450a-1-3p | 2 | _...... | 7 | 85 |
| MIMAT0026832 | mml-miR-186-3p | 6 | ......_ | 1 | 85 |
| MIMAT0006211 | mml-miR-150-5p | 8 | _...... | 3 | 85 |
| MIMAT0007429 | gga-miR-1569 | 3 | ......_ | 8 | 85 |
| MIMAT0007090 | oan-miR-150-5p | 8 | _...... | 3 | 85 |
| MIMAT0006932 | oan-miR-186-3p | 6 | ......_ | 1 | 85 |
| MIMAT0005758 | ssy-miR-513c | 7 | _...... | 2 | 85 |
| MIMAT0005890 | hsa-miR-1302 | 1 | _...... | 6 | 85 |
| MIMAT0005148 | ppt-miR1039-5p | 3 | ......_ | 8 | 85 |
| MIMAT0005517 | dme-miR-997-5p | 6 | ......_ | 1 | 85 |
| MIMAT0020890 | dme-miR-991-5p | 8 | _...... | 3 | 85 |
| MIMAT0020849 | dme-miR-193-5p | 1 | _...... | 6 | 85 |
| MIMAT0004364 | ppt-miR893 | 2 | _...... | 7 | 85 |
| MIMAT0026720 | hsa-miR-887-5p | 2 | _...... | 7 | 85 |
| MIMAT0004910 | hsa-miR-450b-3p | 1 | _...... | 6 | 85 |
| MIMAT0026676 | mdo-miR-186-3p | 6 | ......_ | 1 | 85 |
| MIMAT0003845 | bta-miR-150 | 8 | _...... | 3 | 85 |
| MIMAT0003606 | xtr-miR-150 | 8 | _...... | 3 | 85 |
| MIMAT0003512 | mmu-miR-450b-3p | 2 | _...... | 7 | 85 |
| MIMAT0022903 | ptc-miR171h-5p | 3 | _...... | 8 | 85 |
| MIMAT0022902 | ptc-miR171g-5p | 3 | _...... | 8 | 85 |
| MIMAT0001846 | dre-miR-150 | 8 | _...... | 3 | 85 |
| MIMAT0017183 | rno-miR-450a-3p | 3 | _...... | 8 | 85 |
| MIMAT0017182 | mmu-miR-450a-1-3p | 2 | _...... | 7 | 85 |
| MIMAT0022700 | hsa-miR-450a-1-3p | 2 | _...... | 7 | 85 |
| MIMAT0000853 | rno-miR-150-5p | 8 | _...... | 3 | 85 |
| MIMAT0000451 | hsa-miR-150-5p | 8 | _...... | 3 | 85 |
| MIMAT0000160 | mmu-miR-150-5p | 8 | _...... | 3 | 85 |
